RNA id: XM_026937931.2


Basic Information

Item Value
RNA id XM_026937931.2
length 7380
RNA type mRNA
GC content 0.43
exon number 6
gene id zfhx2
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14543991 ~ 14564674 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGAGCTGTTGTGTGTTTACTACAGGCtacagggagggagggagagagagagagagagggagagagagagagagagagagagagagagaagaaaaacttTTCAGTGTTGTAGAGCGACAGGAAGCGCTGCAGTGAGTCGTCACCATGCAGCTATACCTCTGGGTGTTGGCCTGTAGTGTGGTTCACTGATGGACTCCAAATCCTGAAAAGCTGAAAGGGTGCAAAGTCAAGAGAGATGGGAGACTAAAGACATGTTTGTTCTTAGCAGAGATAATCCTGTGAGGAGCTGGGAGAGACCATGGGTGGGGACAGCGATGGGGGTTCAGTGTGGCTGTGTCCTTTGTGTCAGCAAGGTCAATTAGACCGTGATGGTCTTGCTCTGCACCTGGCTGAAAAACACAGCGTGCTTCCTGCTTGTCTTGATAAGCTATTGGACATTGCGGCTCCCAAGCACTGTTCCAGTGACGAAGTCAGAGAGTCTGGTGCACAAAATGATATCAatgGGACATCACAGCAGCAGTGTTCAGAAAACTCGCCTTTAATGGAGACTCAGAATGAAGCTATCTCTAGTATAACTGACCAAGATGGTTCCTCCCAGGAAAAAGAGGTGTGTGATGAATTGGGAGGAGTGGGAAATGAAAACGACTGGAGTAACACGGAATCAAATCAAGATAATGTTACCCAGCCTGAAAGATCAGAAGCCTCCGTCAATGATGATAAATCCAATGATAAAAGCAATGCTGCTGCTGATGGTGATGTTAACCACCCTTTCAAGTGTCACGCATGTTTGGAATTCTTTCCCACTAGATCGGCATTGAGTGTACATTATAATTCAGCCACCCATATCCAAAGGATGAGAACAGGAGCAGGGAATGACAGTGATTCCTCAACCCCTGTTCTTGCTCGTCCTTATGTCTCTAACAAACCCTACCAGTGTGCAGTGTGTCGCGTCTCTTATAATCATGCCATCACCCTGGAAAGTCATTTAAAGTCTGTATTGCATCAGAGTCGTAGCAGGAATGCTGGAAATGCTGCAGCTAATTCCACAACAAATGCAGGAAATGGAAATGTAGCAGCAAATGTGGCAGCCACTACTGTGGCTAATACCACACAGTTAGCTTATGTTACGACCAGTAATTGTGTCACACAAGCAAGCCTGACTGCATCCCAAGCGATGACCAAAGATGAAGAACAGGTTAAGCCTCAGCCTGCACCCTCATTGCTTTCCTCCCCAGTGGCCTCAGCTCAGGCAGTATCAGCTTTTCTTACTCTCTTAACCTCTAGTCCAAACTCTGTTCCACACTCCatcctcccctctctctttgCTGCTGGAACAGGTGCTGCACCAGGCACAGCAACTCCTCAACTAATAACCCAGCCTCAAATGCTAATGCCCCTTATCTTGAATGGACTCCAACCTCAGAGTCCGACCTCAGAATCCCCCAAACAACTTTTGCAGCAAACAGTGCCAGTCCTTGGTCTCAGTGCAGCACAGCAGGCTCTCTTGACCCAAGGACTTAGTGGTTTGCAAAGTCAGTGGGCTGCTTTTAGACTCTCCAATGCAGCGCAGATGCCTTCAGATGAGAATGACAATAGTGCTGATAAGGGAGCAGgcacaaaagtaaaaaatgagGAACCACAACAGGAGTCTTGTGATCAGCAAGTGCCACAGACATCTGAAGAAACCTGGACCACAGATGATGGTTCTGTGAAAAGCGCTGTTAATAAGGTAGAGATTAAACAAGAGTGCACAAGCTTAAAACATGAGAATAAAAGTGAGGATAGCATAGTATGCACTGACAAGAAGCAAGAGAAGGATGATATGGAAAGCACAGCTGAAGAGGGGGGTCtgggagaaaatgcaaaaagaagTTCTGATGCAAATAAAGACTCAGCAGGTCAGAACATTCAGTGTAGTTGCCCATCATCTTGTCTTACTGAATCCTGTCAGTCTCCTACACACAATGATAAACATACTGTTAACAGTTCAGAGGTGAAACATAGTCCTGCAAAATGCAACCCCTCAGACATTAACCTTGCCTTAATGTCCTCACAGCATAAGAGTGCCAAGGCTCATGCAACGTTGTCCTCAGGACCTCCAGTACTAACCGAGTTTCAGTCTCAGGTTCTGTGGGCCTTTATTGAGTCTCGAAATGAGGCTGATTCAGCAATTCCACCAAGAGAGGACTGTGAAGCCCTTGGCAGGGAAGTGGGACTAACTGAGGATGAGGTACGAAGGTGGCTGGTCGATGCCCGCCGTGCCAAAGAGAGACATAGTGCGGAAGGAATGGAGCATGATGAAATAGAAGGAAGCATTGAAGATGACGAAGGTGCTCTAATGATAGATGAAAGCGAATATGGACAAAGTCCATCAGCTGCCAGTAGTCATGCAATGGATCTCTCTAACAGTTCTGAAATACGCAAAGAAAAGGTATATAGCCAAAACCAAGGGGACTTGTGCTTAACCTCTGACTCAGAAAATGAAGAATTCTACACTTCTGTTATTGTGACAGATGAGGAAAGCCAAAGTAGCTCGTTGAAAGAAGAGCCAGGTAGCCCAGTTAAACAGCCTTCACAGATAGAAACATCAGGGGAAAGGTCAAGCGGTGGAGGAAAGGTTCTCCGCTCCACTACAGTCTTCCTTTCAGATGcagaggatgaagatgaagatcagagtgcaaaaaataaaaagagaaagagggagatagATAAGGAGGAATCAGAATGCAAAAAGGAGAGGCATGATGCTGATCTTGATCTACAGTTAGAAGCACAAGCTGATCCTCCTACTCCTCTTTCGGTTACAGTTGACCATCAAGGTCTTCCAGCTGGAATCTTGCATCCCTTgcctctttccctttctctggCCCCATTTTCTACTCAGTTATTCAGTCCCTATGTCCTCTCAGTTCCATCATCTGTTGTTGGAGTTGGTGTTTCTGAAGCAGACCGAGCCAAAGTAGCGAACTTCACAAGTCCTTCAACTGTTACTCGCACTCAAGCTCCATTTTCTGACCCACTTCATGGAGCAGCCATTGGTTCTCTTGCGCAGTCCACCCAGTTCGTGTCCAATGGCAGTGAATGTGAGTCTGCCTTAGATCTCAGTATAGGGAAACATCAAAGTTCAACAACCTCCGCCTCTGTCTCAGCAAACAGCAAGGTATCTCTACAAAAGACTGCTTTGCTTGATGGTCTTGGATTAAGGCCTACAACGGTTGGTGTCCCTGCAGATGGGAGTCTTATTGTTGTTCAGGTAAAGCCTGATACTGCCATTACAATCCCAAATACTAACACTACCATTGGTAACCACAATAGCTTGAGTAAGACAAGCACAGTGTTCATGAGGGCTGCAGAAAAAGTAAATGCCTCCTTAAAAGAGAGTGAACAAGAAAAGGCAAGAGACCAAAAAAGAACTAATGCAAGAAGGTTCAGGGATATGAGAAGGTCCAGGACTATCATTCAGGCTGACCAGCTTGATGTGCTGTATGGATGTTATTTCAAAGACCCAAACCCAGGAAAGCATGAATTTGAACAAATATCAGAGTGGGTGCACCTGCCAAAGAAGGTGGTACAGATTTGGTTTCAGAACATGAGGGCTAGGGAGCGTAAAGGAGAAGTTCGCTTTATCAGTGATGGCACATTGGCAGCTGTAGGTAAACCACTTATAAAGTTTACTTGGCCACTAACTAAGCCCATTTTTTCAAGTACCCCCAAATCCAACTCAAGCCCAACAACTCCGGGCTGGGTCCCATCTAAGCCACAAACCGGAAATGACACCCAAAAGACAGAAAAGCTTATGGAGGTCAAAGAACCACAGAAAATCCCTATCCAAGGTCTGAGCAGGCCAAAGGAAATGGCATCAACTACCACTGCCAGCAGTACAACATCAGCACTCAAGACAAAAGGTGAAGCAGTGAATGCATTTACAATGGTTAAAATCGCCCCCAAAGCTGTGGCCCCATTAGTTACAGTTCCAATTCTGACCAGTAGCTCTGCCATTCCACAAAACCCTCAGAAGACCAAGCTGGAGGGACAGAGTGAAGCAGACAGGACAGAGGATAAGGATGGACAAGATCAAGAAAAACACATCCCTGGGACAACCAACCGCATGGTTCCAAAAGTATCCACTACGCCAATTAACAAATCTCCAACTGTGGCAACTCAGAAACATAATGGCATTAATTATTGGTCTCAGAAGGGTCAAATTAAGATAAATACTTTGTCCAGGGAACAGCTGGGCTTGAGCACCCCACGCCCTATCATCACTTCAACTTCTGTCGTAACTCCGTCCATGACAGTTACTTCACCACCATCCAGTCAAAACCAAAAAGAAGCAAATTATATTCAGCAGCACTCCACCCCGAGAAGACCACGAACACACTTGAACTGTCTTCAGCTGTCCATTCTCCAGTCTTGCTATGAGACCTGTGCCCATCCTAATGCATTAGAGTGTGAAGCAGTGGGGACAGAGCTTGGTCTTCCACTTAAAGTGGTGCAGATCTGGTTCCAAAACACACGTGCCAAGGAGAAGCGTTGGAGGCTACAACAAGAGAAGCTGTCTCCTAATTCCAGTGATCCTTCCAAGAAGTTGGACATCAGCTCGGGCACTTACCTACAGTACAATGCGCTCAGAGCAAACCGTCCAATTCTGCCCAAACCAGTACAACTGACAGTTCTGGAAAGTTCTCAGTCACCTGCCGCGGGTCAGCCAGCAGCTCGCGAAACACTAAGAGGGAAATGCGAAGTGTGTAACGTAGAATTCGAGTCCAGAGCCGCTGCACGAGACCACGTTTTCTCTCCTCGGCATCTTGCAACACTGCGAACCACTAACTTTGGTCAGTCTGCAACACAAATTAACAATGGATCGGCTGGTGTTGTGAGCCAGGCTTCTTCAAGATCACCAGCTAGCAGCACTAGCTAAGAAATGAACTTAAGCTGCTTCATTAAGTGGACCCACTAGGCTCTTATGCTTTTAATCGGCAAAGAAAAGGTGCTCGTTTTTAAAGCTAATGATCTTTTAATTCTGCACCATTACAGTGGGCCTGAAGAACTCTCCACTTTTGGATGTCAGCGAGATTTGATCCTAAACAGAACTTATTTCAATGACTTGTTGCCACATCATTtcactaataataatcaaatgaaTTGGTTATACTGGACATGCAATTGCTTATGTTGTAACGGTCTTGTTTTATGTCTTTCACTGCTTTGTCTCTGTTTTAAACATCTGTTTCTTTTGTGCTTGTTTATTATCCTTTTTTGCTAATTCAAAACACTCTGGCTGTTTGGGAAAATCTAGCAATGGACCACCTGAAACTCATCAAAAGTTATTCAGCGATTACGTACATGGTACTGCTTTTGCTTGAGCCTGAATGGTGTTCGGCATTGGAGTTTTAATTCAGAGTTCTTATATTTTGATCAAATTCTATTCGATTTTTAAAACGTCATCATTGGGAGTTTTTTGCCTGACAAAGTGAATAAGATCATGGGTgtataaaaaatgtacagataGCTGATGCGAAGTAAATAAGACCGTAGGCAAGTGCCGATATTTAAATGTCACAACAAttgctttatcacattttacAATATTATCACAATATAGAATCAGAAACATGCTTTTGGACATTTTTGTAAGACTGTTATGGAATTCtagtgaacagaattatgggatacCTGCAATGCCGCTTCAGATTTGCCCAGAATAAGGGCCCATAGAAGACAGCTGTCTTTATGTTGCCTTCAGGATGGGATAGTTTATCTTGGGGCAGAAATGCTGCCTAAGTAGGTAGCCTCCTTCCAAATGAAAGGTGGTGATATATTAAGTGTCCACAGTAATATTGCGATATATTGTAAAATCAATTATCGGCACATACAAATAAAGTATATATTGTTTTTTAGAAACTGAGGGAGATGGCAAGTGTTCTGAATCCAGACACTCTAGGAGGCTGTTAATGAAATGACAGCTCCTCCGTTTGCCATCATGacaatcatacatttttttttttcaaactccACTGGCTAAATCGAAAAATGTCAAATGGTTGTCGTGCAGCACTTTCTTCCTTTAAaggtctgaaatattttaaggtTTCCATACTGCTTGGAATAAATGTTTGTATTATAGTGATTTACTGTATGTCAGATTTTACTGAAGTGTTGCCAGcttttgctgtattttattaACACATGGACAGGAAAGGATCAGACCTAGCCGCTGTGCAAAAAGCCAAAGTTAATTCTATATGCTAGCgcaattttaaatgattttgatATAAATTTGTGCAACAACAAAATTATATGAATTGTATTTCTCCACTTTGTTGTTTTTCCCTCTTCAGTTTGTCATAACCCTAATGTGTTACAAATAATCACTGCTTGCACCAGGTTTTTATGGGAGATAAGTCATTTTATACCCTTTTCctcattgtgttttatgtgGGTGCAAACTGAGTACTTGTGCTGGGTAGGAACGTTTTTCTAATGCATCTCCAGCTGACCACGAGGTACTTTCAGTGGTTTTTGACAAGTGTCGATTTGTTGATACGGAAACTACTCAGTGcgacaatgtgtgtgtttgaaggaaACGAAATACTAAAGAGAactgtcatttcattttttttttaagttgtatattgttattcttattattaatgttactaTTAATAGTTTAACAAGATGCAAAACTAAAAGGTAACTTTCTAAAAGGAACTCTATTATGAAAATGGTATTCCAAAGTTAATCatctttctcttgctttctgtcaaaaaaaaaacaaaccaaaaagcattttgagagagagagttttgtaATGGATTTCCCACACCTTGACACTTTGAGCAAGTCCAGGAAGGACTTTGACATATTaagctgaaagtgtgtgtatttcagcCAAAACAAAGTGGAGCACTTGGATGTGTGATGATTCAGAGGCGTGTGGCGTTTTTTTAACGCACCTCcgttattttttaaacactctGTGTTAAGCTGTAGCTCGTGTTCACTGAGCATGAACTGAACGCAGTGCTAAACAATGGGATCACACAGTGTTGCACTGTTCAAAGTTGAGAGGTGGTGCAGAGACCTGCTTTttgactgattattttttttgtttccattaacacttatcacttataacTACTACTTGCTATTGTTTTCATTACTATTATCACagtttgattattattaattcattacgGTTTTTAATAGCATCTTTATCTTCATTGAGATGGTCTTGGTATACTGCGAACTGATGGTGAAAGTGTTGTTATGAACTATTAGAATATTGTTTAAGCTTGTTTTTCCCCTACACTTGTACCTTCATTTTGTGTTGGATCTCCTTTGTTTTcttatacagaaaaataaactgaacttCACTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576995.1 lncRNA upstream 581807 13958024 ~ 13962184 (+) True LOC117595809
TU392599 lncRNA upstream 1161355 13380644 ~ 13382636 (+) True G331502
TU392593 lncRNA upstream 1181289 13361369 ~ 13362702 (+) True G331496
TU392595 lncRNA upstream 1182973 13360280 ~ 13361018 (+) True G331498
TU392561 lncRNA upstream 1253592 13287447 ~ 13290399 (+) True G331468
TU393268 lncRNA downstream 123489 14688163 ~ 14703270 (+) True G332111
TU393426 lncRNA downstream 380317 14944991 ~ 14945212 (+) True G332238
TU393440 lncRNA downstream 391186 14955860 ~ 14956067 (+) True G332248
TU393531 lncRNA downstream 501301 15065975 ~ 15113514 (+) True G332334
TU393529 lncRNA downstream 546989 15111663 ~ 15112523 (+) False G332334
XM_026937861.2 mRNA upstream 8671 14529664 ~ 14535320 (+) True LOC113541072
XM_026938139.2 mRNA upstream 26204 14486970 ~ 14517787 (+) True jph1a
XM_026937862.2 mRNA upstream 138229 14386961 ~ 14405762 (+) True crispld1a
XM_026937910.2 mRNA upstream 234520 14297560 ~ 14309471 (+) False cd226
XM_026937909.2 mRNA upstream 235317 14297560 ~ 14308674 (+) True cd226
XM_026937980.2 mRNA downstream 1118 14565792 ~ 14577242 (+) True pabpn1
XM_026937981.2 mRNA downstream 1119 14565793 ~ 14575630 (+) False pabpn1
XM_026937982.2 mRNA downstream 1889 14566563 ~ 14577243 (+) False pabpn1
XM_026937830.2 mRNA downstream 150121 14714795 ~ 14721577 (+) True xkr9
XM_034298216.1 mRNA downstream 231970 14796644 ~ 14848084 (+) False eya1
trnat-agu_17 other upstream 1158717 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 1285575 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 1831313 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 2387204 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 2795432 11738158 ~ 11748559 (+) True ankha
XR_004576981.1 other downstream 686961 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 1001501 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 2542798 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 2542798 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 2720408 17285082 ~ 17300011 (+) True G333388

Expression Profile