RNA id: XM_026937932.2


Basic Information

Item Value
RNA id XM_026937932.2
length 1167
RNA type mRNA
GC content 0.40
exon number 4
gene id thtpa
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14536562 ~ 14540764 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAATTTTTGCCCAGAAGCCGGAAGTAAAGCCTTCTAAATGCATTATGGGATTGACTAAAGCTTTGAAGTAATGCCTGTGGAGGTGGAGAggaagtttgtgtgtgattcACACATCCTAGAGAAACTGAAGGACATTGGAGCTGTATGTATGGGTCAGTATGAATTTAAAGACCAGTACTTCGACTCAGCAGACTTCACATTAACCCTAAAAAATTTCTGGTTGAGAAAACGTGAAGGATCCTGGGAGCTAAAACGGCCCCCGTCATCTCATCTGAATGCAGAGAAAAGAGCACAGGATGTGTGCACTAATTACAGAGAGATCACAGATCTGCTTCAGATCAGAGCTGAACTTATGGCTATCGTGGGCattcacacagaacacacattaGACTCCTCACAGACAGAACAAGCTAAAGATGTTCATGCTGAGTTTGAAAAATGGCTGCAGGATTTGAAGCTGGAGTGTTTTGCGGAGTTTACCACCGTCCGGTGTTCTTACACGCTGGAGGACGAAGGGGACAACAGAAGAGTCCGGATAGATCTGGATCAGGCCGATTTTGGCTACTGCGTAGGAGAGATCGAAGTTCTTGTTTCAGAAGGGGTCGAGATGACGTCTGCGCTGCATAGTATCGAGAAGACGGCTCAAAAATTAGGTCTcggtggtgagcagaaaactCGGGGGAAAATGGAGGTGTATCTTCAGAAATTTCGCCCAGATCACTACGCAGAGCTTCTTAAAGCTCATATACTGTGATATAATTGTAactaacaaatattttattcattaataataatgaaaaaaatgaatatatgcctgtaataatgtgtaaatctGCAAAGTTTGATCACAAATAAACCAATATCTGCAGCCAGACAGTATATACTGTAGAGCTGAGGGAGTCTGTGGGGAAAATTTAGCAGATTTGAGGgaagttttaaaaatttttctttttcaaaatattaattgaatGTATTCATAATGATGCCAAAATTTCCAGTTaacatatttcattaaatatcaTATAAACGCATTTGAAATCACGATACAGCTTCCCCAGAAGTCTCTGTTAGTGAGCGATGGATATGGGGACCTTAAAGTTTctgaaagcttgtcagaaaaCCAAATAGTGggtgtttaaataaatattataggttaataaatgaaa

Function

GO:

id name namespace
GO:0050333 thiamin-triphosphatase activity molecular_function

KEGG:

id description
K05307 THTPA; thiamine-triphosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393340 lncRNA downstream 13947 14513735 ~ 14522615 (-) True G332169
TU393341 lncRNA downstream 14914 14517639 ~ 14521648 (-) False G332169
TU393198 lncRNA downstream 69949 14466394 ~ 14466613 (-) True G332056
TU392965 lncRNA downstream 777272 13758929 ~ 13759290 (-) False LOC113541105
TU392679 lncRNA downstream 1122751 13412902 ~ 13413811 (-) True G331569
TU393330 lncRNA upstream 3268 14544032 ~ 14634926 (-) True G332164
TU393373 lncRNA upstream 173453 14714217 ~ 14797198 (-) True G332196
TU393844 lncRNA upstream 804508 15345272 ~ 15397132 (-) True G332580
TU393913 lncRNA upstream 1025423 15566187 ~ 15566646 (-) True G332637
TU393941 lncRNA upstream 1074736 15615500 ~ 15618841 (-) False sec61g
XM_026937825.2 mRNA downstream 53717 14475937 ~ 14482845 (-) True gdap1
XM_026938127.2 mRNA downstream 107192 14419894 ~ 14429370 (-) False pi15a
XM_026938126.2 mRNA downstream 107192 14419894 ~ 14429370 (-) False pi15a
XM_026938125.2 mRNA downstream 107192 14419894 ~ 14429370 (-) True pi15a
XM_026938151.2 mRNA downstream 163109 14313082 ~ 14373453 (-) False dok6
XM_026937902.2 mRNA upstream 38021 14578785 ~ 14586869 (-) True ngdn
XM_026938179.2 mRNA upstream 77279 14618043 ~ 14629435 (-) True prdm14
XM_026937935.2 mRNA upstream 94922 14635686 ~ 14695608 (-) False ncoa2
XM_026937934.2 mRNA upstream 94922 14635686 ~ 14695608 (-) True ncoa2
XM_026937936.2 mRNA upstream 94922 14635686 ~ 14690431 (-) False ncoa2
TU392350 other downstream 1858629 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 1858629 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 3453411 11082268 ~ 11083151 (-) True G330379
XR_003404157.2 other downstream 3605787 10923126 ~ 10930775 (-) False ackr4b
TU391129 other downstream 4013299 10522732 ~ 10523263 (-) True G330185
XR_003404167.2 other upstream 396122 14936886 ~ 14937404 (-) False LOC113541102
TU393587 other upstream 425049 14965813 ~ 15065810 (-) False LOC113541115
XR_004576965.1 other upstream 2289932 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 2289932 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 2575334 17116098 ~ 17139685 (-) False zbtb47b

Expression Profile