RNA id: XM_026937937.2


Basic Information

Item Value
RNA id XM_026937937.2
length 4730
RNA type mRNA
GC content 0.49
exon number 18
gene id ncoa2
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14635686 ~ 14695608 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGTGCAGAAGGCCGATGTCTCGTCCACAGGCCAAAGTGTTATTGACAAAGATGCCCTCGGACCAATGATGCTGGAGCCTTGGATGGCTTCTTCTTTGTGGTGAACATGGAGGGGAACATTGTGTTTGTGTCGGAAAATGTGTCCCAGTACCTGCGCTACAATCAGGAGGAGCTTATGAACACAAgtgtttacagcattttacaCGTAGGAGACCACGCAGAGTTTATTAAGAACCTGCTGCCTAAATCACTCGTGAATGGCGTGCCGTGGTCGAGCGAGGGCTCCAGGAGGAACAGTCACTCGTTTACATGCCGCATGCTGGTGAACCCAGAGGAGGCGCAGGAGCAGGAGGCACAGAAATATGAAACCATGCAGTGTTTCACTGTCTCAGAACCCAAATCCATTAAAGAGGAGGGAGAGGatcTGCAGTCGTGTCTGATCTGTGTAGCGAGGAGAGTACCTATGAAGGAGCGACCAATGCTCCCCACACACGAGAGCTTCACCACACGGCAAGATCTCCAAGgGAAGATCACGTCGTTGGACACCACTATGTTACGAGCCTCTATGAAGCCTGGATGGGAAGACTTAGTAAGGAGATGTATTCAGCGCTTTCACCTACAGAACGACGGGGATATTTCTTATGCCAAACGTCACCAGCAAGAAGTATTGAGACATGGCCAGGCGTTCAGTCCCATCTATCGGTTCTCCCTCTCTGATGGCACCATCGTCTCGGCTCACACCAAGAGCAAACTCGTCCGCTCTCCGGCCACCAATGAGCCGCAGCTTTACATGTCACTACACATTCTCCAGAGAGAGTCAACTGTATGTGGCATGGCACCTGACCTGGGCAAACCCATGACGCCACTGACCACAATGACCTCCCCTAATCCAATGAGCGGAAATGCTCAGGGTCAGGAGGGCATAGTTAGTAGCAACACTCATGCCTTCTCATCTCCAGGAGTCCATAAAGATTTCCGTTTTGGCTGCCCAGGCACCACTCAGGGCACTGGATACCCAATGAAAATGAGCAGTCCATCGCATCGCCCCAGTCCTGTAACCAGCTCGCCCCGTTTACCCCCAGCCCAGTTTGCCCCCACCAATCCCCTCCATTCACCCGCAGGCATGTGCCCAGGCAACGGCAGTAGTCAAGTGTTCACTAGCAGTTCCCTTAATGCCCTTCAGGCTCTTAGCGAGTGCCAATCCATTAGCCAGTCTCTGGGCTCACCTGATTCCAAAAAATTAGAATCACCAGCCTCAGGAGGAGTTGGTTCTCAAGTGTTGCCCAAAATGGAGTCATTTGGGGAGCATGAGCAAAGTGGAAACGGGCATGACGGGCATGAAAACGACAACGCCGGGCATCAAAGGGATGAAAAAGGCAACCTGGGTCAGTTCAACAGCTCAGACGAAAATAAGATCCATGAAAGCAAAGGGCACACAAAGCTCCTCCAGCTTCTCACCACTAAAAACGAGAACATGGAGTCCTCACCTTCACCTGCTCCTGAGAAGGAACTGATGACCGGGCATCAACCTGGCACATCAGGAACCAGCGCTACCTCCTTAAAGGAGAAGCACAAAATCCTGCACCGGCTCCTGCAGAACAGCACGTCACCGGTGGACTTGGCAAAGATCACGGCCGAGGCGACAGGGAAAGAACCGAGCCATGACGGAACCAACGTGGCCGACATCATCAAACAGGAAGCGGTGAGTCcgaaaaaaaaggacaatgcCCTCTTGCGCTACCTGCTGGACAATGACGAGAACACGATTAAGGACAAGGGAATAAAGACAGAGACGGGAGAGATTAAGGTGGAGGGGAGTAACATGGTCACTGTGAAGAAGGAGAAACCGGATGGAGGATATGAACAGGCAGAGCAGtCCAGCGAGCTGGATGATATCCTGGATGACCTGCAGAACAGTCAACCAGGTTTTTTCTCTGAAGCTCGTCCCATGTCACTGCCAGCTGCTGTCGATAAGCAGGCAATCATCAATGACATTCTGCAGATCACAGGAGAGGGCGGGGTACAGCCCAGAGCAGTACCGAATTTCAGTGGCCCGAGGCCTCCGGGTCGGGTTCCTCCCATGCGGAGTGTGTCTTTGGACATGAATGTCTCAGCTAAAGGCTCGCCGGGTCAGTATCCAATTATGAGGAACACCACTCCATATTCACtcatccagcagcagcagcagcagcagcaaggCATGATAGGAAATCAAGGCATCATGACCAACCAGGCCAACATGGCAGatgttTGGGCGTCTCAGGGTGTGAGCAGTCCCTCCCCTCAGGGGGCGCTGCAGGGACGCATGgtgcaaaacacaaacatgccaATTAGGCCCAGCAGCCAACCAGGAGCAAGGCCCATGCTGCAGGGCCAGATGATGCCCAATGCCCAGTCTATGGAAATGGACATGAGTCTGGCAGGCCCTACATTTCCACAGCAACAGGCTCCGCCCAATCAGACAGCTCCACCCAATCAGACAGCTCCGTGGCCTGACAGCATGATGCCCATTGAGCAGGTGGCATTTGGAGATCCTAACAGgtccCTGTATGGTACCCCACAGGAAGATGTGCTGTGTGCAGCTGAAGGACCTGCTGATGAAGGTGCTTTACTTAATCAGCTCTACACTGCCCTCAAAGACTTTGATGGTCTGGAGGAGATTGATCGAGCTCTGGGCATTCCAGCACTCGTGGGACAGgCTCCGTCATTAGACCCTGAACTATTCCCAGGTCAGGATCAAAACCTGCTGATGGACCAGAAGCCCCTTTACCCTCAACAGCAGTACGCTGCTCCACCTTCCCATAACACACCAGGAGGCTTCGCTCCAATACAGGACGCTGGTTACCATAGCATTGGGGGAGTTGGAGGGCCAAGGCCAGGATTTCCCATGATCCGTATGCAGCACAGACCAGGTCTCCGGCCACCCGGGAGCGTCCCAAATCAACCTAATGCACTCAGACTGCAGCTGCAGCACAGACTACAAGCACAGCAGAATCGCCAGCCTATGATGAATCAGATGACTGGAGTGTCAAACATTAACCTACCTCTAAGACCTAATGTTCCGAATCAGgGGACCATTAACGCTCAGATGCTTGCGCAGCGTCAGAGGGAGATGCTCAGTAATCATTTGCGTCAGAGGCAGCGCAGCATGAGCCTGCGACCTCAGGGCCTCAACGTGCCATCCAATATGGCTGCCGGCACCATGGGCGGCGCCCAGATCGCCCATGCCAACCCTACACACTTCCCCTACACGCCCAACTATGGAATAACTCAGCAGCCTGACGGAGGGTTCGGAGGTGCAGCGACCCCTCAGAGTCCCCTTGTGTCCCCTAGAATGGGTCACGCCCAAAGCCCCATGATGCAACAGGGTAATGCCACATTTCAGTCGTCTCCAGAGATGAACGGCTGGACGCAGGGCAACATGAACGCCAACAGCATGTACACTCAGCAAGCCAGCAGCGGTGTGTATAACAGTAACGGCATGAGCATGAATGTGCCCATGACTCCCAACACcaacagcatgagcagcatgGGCCAGATGGGCACGGAGCagCCGAAGTACTGTTGACCATGACTCGACAAAGCGTGATTTCCACCAGCACGGGCCAAGAGCGAGTCTGCGCCCTGCAGAGGGTCCCTACTCATCCCCAGAACCCTACAACTctactgccccctgctggagggagatcatacacacacacacacacacacacacacacacacacacacacacacacacacacaaaatttgaTATTTTGGACCTTGAGTGTCACCCTTTCAAATCTATGGatcctacacaaacacacacacacaaggcaaaGTCCATTTGTTGTATATGTATAAAACCGCATTCACCGTAGTGTGACTTAGCGTGACTCTCCTATAAACGGTGACATCAGGATCCTGtgaatgtctctctctctctctctctctctctctctctcagtgaacccaatccacacacactcttatattCTCCTACTGTCCTGTCCCATAGTCCCACACAAATACCACGGCCGCGCTcaacattttagccatttttgcctttttttttcatctttctttttttctatagaGTGAGagtaattttaaagattaaaactCTGCACAGAATGGTTTGCGGGCAGCATAACGATTTGTGAATTCAGATATTATTCTGTCCGGTGTGTCAAAGGAACAGTTCAGCCAGGAATAAAATGTACACTGTTTCCCCCTTTACTCCTGAATGTAGTCCATCAGCCAAGACGTGCTTTTATTCAACGTTTACTTGTTTAGTTTTGCTCCGGAGTTACGagactaatgtagctaacaagtaaggaaAGTTTAACCtactgaaaatattttccaaaaacacagATTAACTttgtaaactttattttttaataaacgaTTTTGTGTGAAAACACATGATAGTCTGTATTTACAAGTTTATATTCATTTTCTCTAGCTAACAGATAAGATTAATGGAACATTCAGGATTCTACAGGTTTTAAGAATGTTATGCTGTaggattacaaaaaaaaaaaaaaaaaaatcacaaatcttAAAATCATTTCTTGTAACGTTATCAGAATGTTTCTGAAAAGCATCAGCAAAGGGTTTGTCTTAACGTTCCTACAACTAAAAAAGGTTGCAGCAACATTGTAGGAATATTTATGaatgttatgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:2000273 positive regulation of signaling receptor activity biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0030851 granulocyte differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0030375 thyroid hormone receptor coactivator activity molecular_function
GO:0046966 thyroid hormone receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393330 lncRNA downstream 760 14544032 ~ 14634926 (-) True G332164
TU393312 lncRNA downstream 70982 14537252 ~ 14564704 (-) True G332147
TU393340 lncRNA downstream 113071 14513735 ~ 14522615 (-) True G332169
TU393341 lncRNA downstream 114038 14517639 ~ 14521648 (-) False G332169
TU393198 lncRNA downstream 169073 14466394 ~ 14466613 (-) True G332056
TU393373 lncRNA upstream 54914 14714217 ~ 14797198 (-) True G332196
TU393844 lncRNA upstream 685969 15345272 ~ 15397132 (-) True G332580
TU393913 lncRNA upstream 906884 15566187 ~ 15566646 (-) True G332637
TU393941 lncRNA upstream 956197 15615500 ~ 15618841 (-) False sec61g
TU393956 lncRNA upstream 961203 15620506 ~ 15620717 (-) True G332676
XM_026938179.2 mRNA downstream 6251 14618043 ~ 14629435 (-) True prdm14
XM_026937902.2 mRNA downstream 48817 14578785 ~ 14586869 (-) True ngdn
XM_026937932.2 mRNA downstream 94922 14536562 ~ 14540764 (-) True thtpa
XM_026937825.2 mRNA downstream 152841 14475937 ~ 14482845 (-) True gdap1
XM_026938125.2 mRNA downstream 206316 14419894 ~ 14429370 (-) True pi15a
XM_026938257.2 mRNA upstream 42721 14702024 ~ 14710822 (-) True tram1
XM_026937894.2 mRNA upstream 273692 14932995 ~ 14937404 (-) False LOC113541102
XM_034298171.1 mRNA upstream 273693 14932996 ~ 14937404 (-) True LOC113541102
XM_034297847.1 mRNA upstream 286356 14945659 ~ 14954678 (-) False terf1
XM_026937821.2 mRNA upstream 286356 14945659 ~ 14954676 (-) True terf1
TU392350 other downstream 1957753 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 1957753 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 3552535 11082268 ~ 11083151 (-) True G330379
XR_003404157.2 other downstream 3704911 10923126 ~ 10930775 (-) False ackr4b
TU391129 other downstream 4112423 10522732 ~ 10523263 (-) True G330185
XR_003404167.2 other upstream 277583 14936886 ~ 14937404 (-) False LOC113541102
TU393587 other upstream 306510 14965813 ~ 15065810 (-) False LOC113541115
XR_004576965.1 other upstream 2171393 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 2171393 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 2456795 17116098 ~ 17139685 (-) False zbtb47b

Expression Profile