RNA id: XM_026937939.2


Basic Information

Item Value
RNA id XM_026937939.2
length 3122
RNA type mRNA
GC content 0.44
exon number 16
gene id mtrr
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13406164 ~ 13447748 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTTTTGAAATATTATAACAAGcgcacattaacacattaaccatTAACTAAAGGCATTCAACAACGCattatacacactttacacaaaaCTGTAATGATACAGTTAATGCAGATGGTTTGTTCTACTATCGCGAGATCTTACTTATTCTCGCGCCAACAACCGCACTTTACCATAGCATCTGGATCGACAGTATGTTAAGTAATCTATGAACCTCGTGTAATGCTGTCATATGTGAAGGGTGAACTCTTTCTGAGGCTGAGATGTGGCTGTTGTTAGTCATCTAAAGTCCACAGAGCCCATGTTATCATGCCTAGTGGGGTTTCATCATCTCGCTTCCTGATACTGTACGGGTCGCAGAAAGGTCAAGCTCAGTCTATAGCCGAGCAGCTCACCGATCAGGCCGCCGAGCATGGCTTTGAAGCAGAGATCAGTTGCCTGAGCAAGGGGGACAAGTACAACTTGGAAAAAGAGCACAGCCCTGTGGTTTTTGTCGTTTCCACAACGGGAGATGGTGAACCTCCAGACACGGCACTGAAATTTGTGAGGAAGATCAAGAAGAAATCTCTGCCCCGTGATCACTTCTCTCATCTGCACTATACACTGTTAGCTTTGGGGGACACCAATTATACAAATTTCTGCAACTGTGGAAAAACCATTGACAGCCGTCTCCAGGAACTTGGGGCAAATCATTTCTATGCAACTGGCCTTGCTGATGATGGTACAGGGCTGGAAGTAGTGGTGGATCCGTGGATTGATGGACTTTGGGAAGCTCTAAAGAAGATatttgtcaaaatgtctgcCTCTGATCTCATTAGTGACACTTCTCTGAGCAATGGTCATCAATCAGTGGCCGTCCAGGAGAAACTCGAGTCGTCTGCACAAAGCCTTCAGCTGCTGGATATTAGCGATGTGGATACAGGAAAATCCAAACCGGAATCTGAAACTGAGAGCCGAGATGCAGAAGCTCCTTTGGACGCGTCTTTGAATCGATCCGTAGCTCCGCTTTCTCAGTCTTCACTCAGCATCCCTGCACTTCCCCCATCTTACCTAGAGGTTTTTTTGGGAGATGTGCCTACTGGAGAGGAGGAAGTTCACGTTGTTGCACAAGGCTTTCACGAAGTGCCAATTTCAAGAGCACTCTGGTTAACTCGAGATGATGCGGTGAAACCTGTCATCTTGCTGGAGCTCGATATGAAGGATGAGAATATTTCTTACGAGCCGGGCGATGCGTTTGACCTCCTCTGTCCAAACAGAGACACCGAGGTGGAGGATTTGCTTCACAGACTGGGGCTCGATGACAAAAAGAATCATTTTGTTCACCTGCAGCTGctcaaaaacaccaaaaagaaGGGAGCACGAGTTCCTCCCTACATCCCAGAAAAGTGTACTCTACAGTATCTTCTGACCTGGTGCTTAGAGATAAGGAGTATACCCAAAAAGGCTTTTTTGCGATCTCTGGCAGACTGCACGCAGGAAACTCGGGAGAAGAGACGACTGCAGGAGTTATGTAGCCGTGAGGGAGCCGCAGATTATGACAGATTTGTGAGAAACGCCAGCGTGTGTATACTGGACCTTCTGTGTGCTTTTCCATCCTGCACGCCTCCTCTCAGCCTCCTTATTGAACATTTACCGAAGCTGCAGCCAAGAGCATACTCAGCCGCGAGCTCGAGTCTACGCCACCCTGGAAAGGTCCATATTGTGTTCAGCGTTGTGGGGTTTCCGGCATGTGCTGAGCATCCAGAGAGGACTGGATTGTGTACAGGATGGCTAGCGGATCGCGTGTCTACCATCATTGAGCCATATGGGACAAAACAGGCTTCACGAGAGAGTGTAAATGATAAAGCCTTGCCCAAGGTCCACATTTGTCCTCGTCTCAATAACAGCTTCCACTTGCCCTCTGACCCCACAGTTCCCATGGTGATGGTAGGACCAGGGTCAGGTGTTGCACCCTTCATAGGCTTCCTTCAGCAAAGGCAAAAGGAGCGAGCGAGAAATCAGGACAGTGCTTTTGGTGAGACTTGGCTCTTCTTCGGCTGCAGACATCAAGACAGAGACTTCATCTTCAGAGAGGAGTTGGAGAGGTTCGTGGAGAACGGGACACTGAGCCATTTGAAAGTGTGTTTCTCTCGAGCTGAGATGGACAGAAATGGTTCCGAACCCAAACCCAAATATGTCCAGCATGCCCTACTCCTTCATGCCGAGCATGTCGCGCGCATTCTGCTCAAAGAAAACGGTCGTCTCTACGTTTGTGGagatgCTAAGAACATGGCAAAAGATGTGAATGATACTCTGATGGAGATCATAGGGAAGGAGCTTCAGGTGGATAAGCTGGATTCTATGAAGACCATAGCGAAACTGCGAGAGGAGAAACGATACCTGCAGGATATCTGGagctaaagaaagaaattcacAAGCTATGGGggttatattaattatatatacttacataattatataaggATTTTAACTGCACTATCCCATCAACCACAACAGACCAGACATGTGCCAATACTGAATTTTACCATGGCAACTATCTAACACACTGGGGTAGTTTAAGATGTTGTCATTTTgatattgtgttttaaaaatagtattaaaaaaGACACATCCGATGCTGACTTCATCTCAGGTGCACAgaatgctgtttaaaaaatgctgCCTATTTAGGCAGCCTCTATCCAAGTGGACACTGATGCTTTGAAACGTCCACAGTACTATTGTATGATTTTAAATAtctaattatactgtataccaGACAGATCAGTCTTTGccttttatgcattttaatgactGACAGGGGCGTGTTCAGATATGGAATTTATAGGTCATAAAATATAGCATATATGGATGTAATGAATCAGATATTCACAGATTTGTTTCAGATGTGTAGAACAAACTTTAACAGCACAGACTGCGTGAACACCATCGGTTcccacctgtttttttttttttttttttaatctaaaatttgTTTTAGACAAATGCATAGTTCAGATTCAGCTGTGGTTTCTTTTGCCACATAGTCTATTTTAAAATGCCTCTCAATGCTGCAGTGACCTTTTTATCCATTACAAGTTTCACTTTCTCACttctgattaaataaatactttatacGACTGAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005829 cytosol cellular_component
GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0003958 NADPH-hemoprotein reductase activity molecular_function
GO:0010181 FMN binding molecular_function
GO:0030586 [methionine synthase] reductase activity molecular_function

KEGG:

id description
K00597 MTRR; methionine synthase reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392599 lncRNA upstream 23528 13380644 ~ 13382636 (+) True G331502
TU392593 lncRNA upstream 43462 13361369 ~ 13362702 (+) True G331496
TU392595 lncRNA upstream 45146 13360280 ~ 13361018 (+) True G331498
TU392561 lncRNA upstream 115765 13287447 ~ 13290399 (+) True G331468
TU392580 lncRNA upstream 131753 13274127 ~ 13274411 (+) True G331487
XR_004576995.1 lncRNA downstream 510276 13958024 ~ 13962184 (+) True LOC117595809
TU393268 lncRNA downstream 1240415 14688163 ~ 14703270 (+) True G332111
TU393426 lncRNA downstream 1497243 14944991 ~ 14945212 (+) True G332238
TU393440 lncRNA downstream 1508112 14955860 ~ 14956067 (+) True G332248
TU393531 lncRNA downstream 1618227 15065975 ~ 15113514 (+) True G332334
XM_026937943.2 mRNA upstream 9703 13386074 ~ 13396461 (+) True cmbl
XM_026937944.2 mRNA upstream 9703 13386103 ~ 13396461 (+) False cmbl
XM_026938162.2 mRNA upstream 26512 13373564 ~ 13379652 (+) True klhl15
XM_034298205.1 mRNA upstream 26512 13373814 ~ 13379652 (+) False klhl15
XM_026938163.2 mRNA upstream 26512 13373878 ~ 13379652 (+) False klhl15
XM_034298306.1 mRNA downstream 527492 13975240 ~ 13980189 (+) True cbln2b
XM_034298235.1 mRNA downstream 786296 14234044 ~ 14295771 (+) True rttn
XM_034298236.1 mRNA downstream 786296 14234044 ~ 14295596 (+) False rttn
XM_026937910.2 mRNA downstream 849812 14297560 ~ 14309471 (+) False cd226
XM_026937909.2 mRNA downstream 849812 14297560 ~ 14308674 (+) True cd226
trnat-agu_17 other upstream 20890 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 147748 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 693486 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 1249377 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 1657605 11738158 ~ 11748559 (+) True ankha
XR_004576981.1 other downstream 1803887 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 2118427 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 3659724 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 3659724 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 3837334 17285082 ~ 17300011 (+) True G333388

Expression Profile