RNA id: XM_026937944.2


Basic Information

Item Value
RNA id XM_026937944.2
length 3642
RNA type mRNA
GC content 0.39
exon number 7
gene id cmbl
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13386074 ~ 13396461 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGAGGCCACGCTCAAATAAAGGTGTGTTTTCCTCTTCGACCTTCCCAGTTTCGGAGCCTCTTCACTTTTCTCTATTACAGTTGCAGTGTCAAATATCCACGTGCCAAACAATCACGATGGCAAATGAAGCCAGGCCATGCCCGTGTGACATTGGGGACAGGATGGAATATGGCAGCCTTGGCGAGGAGGTTCAGATTGAGCATGTTAAAGCTTACGTGGTGAAACCTAAAGCACCAACAGACAAAGCAGTCATTGTAATTCAGGACATTTTTGGATGGCAACTACCCAATACAAGATACATGGCTGACATGCTCGCTTCAAATGGATATgtTGCTGTTTGCCCAGACTTCTTTCTTGGAAAGGAGCCATGGAGTCCTTCAAGTGATTGGTCAACATTTCAGGAGTGGCTTGAAGACAAAAAACCTACCAACATCAACAAgGAGGTGGATGTGGTTTTGAAATATCTCAAGGAACAACGTGGAGCTAAAAGGATTGGAGTGGTAGGGTTCTGTTGGGGCGGAGTGGCCACACACTACATAGCCCTCCAATATCCTGAAGTCAAGGCTGGGGTTTCAGTTTATGGGAtcattaaagagagagaggatagtTATGAACTCAAATGTCCGACTCTGTTCATCTTTGGTGAAAACGACACAGTGATACCACTTGACCAGgtGACAACACTTGAGGCAAAACTGAAGGACAAGTGCACTGTTGACTTCGAAGTGAAGGTTTTCCCCAACCAAACTCACGGATTTGTGCATCGTAAACGGGAAGACGTCAATCCGACAGACAGACCTTTCATTCAGGAGGCTCGGGAGGACATGATTAACTGGTTAAATAAGTACATGTAAAATTAGAGCAAATTATCTGGTTTAAAGTAAAAGTTTCCTTACCCACTCTTACCCACTCTGACACTCTTGTTGATGACCCAGGACGTGTTTGTGTCCAAAGTGCACACTGCATTCGTGAAGCTACTATAGTATAATACATgactaaatcatcacacactctccttaAAAGACATTTGGTTCAGTAACAACAGTTGCACATAAAGGTTTCATAAAATACCCTAGCAAGTTTATTGCCCTTagaagtaagcagataaaagatcAAGAGTTGACTTAAATTGTGGCATTTGcttttggaatctgttgctgttaactttcaatatgaagtccaaagagctgtcgctgccagtgaagcaatccataattaaattgaaaaatgaaaacaaatcagtcagagagatagcaagaatattaggtgtggccaaatcaactatttggtcCATTCTTAAAAAGGCAGAACACACTGGTGACCTCATGAACAACCACAGGtccggaagaccacggaaaacaactgagGGGGAAGACAGacgaattctttccctggtgaagaaaaacccctttacaacagttggccagatcaagaacaccctccaggaggtaggcgtatctgtGTCAGAGTCAACAAttaagagaagacttcaccagagtaaatacagttGGTCTGCCGTAAGcctcagagagaggaagactaAAGGTAGAcataaaaatgccaaaaaacaaatgaaaaaacgTGTAAGTTCTGAAACAACatcagatggacagatggaacAAGAATCTGTTTTACCAGAATCAGGGGAAGAGACAAGTAAagagaagggaaagaagtgCTCATGATCTGAATGATAGTACGTCATCTTGTGAAgcctggtggaggtagtgttagGGTATGGGCATGTATGCCTGCAagtggaactggttcccttttATTCATTGATGTTTCACAGTGCAGATTGATGATTGAGATTACCATACTGAAGATTATTCTCCAATAATGGCACATCCCAAAGGgttcttattcctcttatgccacagcgatttgccaaagattacaatgaaaaaaatttattgatgaacaacacattgtgctttttaatcGTTTATAGTTGCATATAATGCTGCGGAATGTCAGCGAGTTATTTGCTGTCATCACTTACAAAAAACAGTCTTCCCTCTCTAGcctctttttccccctctcttgatgttaagacaaaaaatgcagcttatcataTTTTTGAGAAACTAGAGTGTTCCTGTGGTAAACACTTTCCCATAGAAAATTAATTGTTACAAACCGACACTAGAGattccttccttaaatgttaagtaaatgtccccatacagaaagcttcaccatgtaaatgattatatgtttttcttttgttaaataacatgtttttaaaatttattattagctttagatctcTGAGGTCTCTTTGTCCATTTTTACATACCACAATATGAAatctaaagaaacaaaattcaGACCGTGCATGCTTATAGAATCTGGCCAAGAATGGTCAATGTCACTGTTTTCAACTGCTGATACAACTGAGGCTGTATGTGATTATGTGCCTGCTTCAGATATGCAGGTTGCTTTGCTTGCATCTGTGAAGGAAGAGATAGGTTGTGATAAAAATGGAGCATATTCCTCCCACTGTTATAATGATTCCTGTGTGGTTGTCcctgttcttttcattttaaagggGGTGAGATGAGCAGGAGGAGCTGAGGGAGGGGAGAGGGGTCACTCGGTACAGCTCActgagatagacagagagaagctTTACTAACTGACATCTCTGTGAGACTGGGGTAACATATGCAGTTGTATGTTATGGAGATGTGTTGATCATATTTTACTTTTAGAAATAGTGTAATGCATTAATTTAGAGTGATAATCCTTTATACTATGCATTCTCCCCAGACacagatatacactatatggccaaaagtatgtggtcacctgaccatcaacaCCAATATTtgggccttcctcaaacagttgctacaaagttggaagcacaaaattgtgTTCGATGTCTTTGTAAGCGGTTGTATTACAATTTGCCTTCACTGGAACATGAATGAgatccatgaaaacatggtttagcaaggttggagtggaagaacactGGTGCCCTGCACAAATCCCTGAACTtgactccactgaacacctttggaatgaactggaatgccaacaTACCCCAGGCCATGGTCCAAATACTAGTGCAaacccttcccagaagagtagaggttattgTATCAGCAataggggaactaaatctggaaagtgatgttcagaaagcacataagggtatgatggtcaggtgtccacaatcttttggccatacagtgtattacTATACTTACTTAGATTAGTTATATTGTAATGTTTCATAGGTATGGTAGATACGTGACAATGTTCTACTGTGTGATTGCATTAACCAACCTAGTAGGTACAAAGactgaaaattattttcttaGAGAATGTGGCTGATACATAATAGCATCATTTTCCTTTCTATCTTAAAGTTAAGGGTTAGTTAAGTTAGTGCTATGGGTGCTTTATAAGGtactttcattattttactCTATAATACTATTCCTGGATTCCAGATGGCAGAAATGTGTTGATGGGAGAATTGTCAATCAGAAACTCAAATCATGTCAATGAGAAATCTGTTAAAATGAAATAGCAATGCTTTTGTTGACTTAACTAATAATTGGATAATTTGATAATtgacttcattattttttttttttaataaatcatacaaTGGTTTTATTAC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392599 lncRNA upstream 3467 13380644 ~ 13382636 (+) True G331502
TU392593 lncRNA upstream 23401 13361369 ~ 13362702 (+) True G331496
TU392595 lncRNA upstream 25085 13360280 ~ 13361018 (+) True G331498
TU392561 lncRNA upstream 95704 13287447 ~ 13290399 (+) True G331468
TU392580 lncRNA upstream 111692 13274127 ~ 13274411 (+) True G331487
XR_004576995.1 lncRNA downstream 561563 13958024 ~ 13962184 (+) True LOC117595809
TU393268 lncRNA downstream 1291702 14688163 ~ 14703270 (+) True G332111
TU393426 lncRNA downstream 1548530 14944991 ~ 14945212 (+) True G332238
TU393440 lncRNA downstream 1559399 14955860 ~ 14956067 (+) True G332248
TU393531 lncRNA downstream 1669514 15065975 ~ 15113514 (+) True G332334
XM_026938162.2 mRNA upstream 6451 13373564 ~ 13379652 (+) True klhl15
XM_034298205.1 mRNA upstream 6451 13373814 ~ 13379652 (+) False klhl15
XM_026938163.2 mRNA upstream 6451 13373878 ~ 13379652 (+) False klhl15
XM_026938165.2 mRNA upstream 35887 13343746 ~ 13350216 (+) True c8g
XM_026938148.2 mRNA upstream 44442 13336338 ~ 13341661 (+) True msrb2
XM_026937939.2 mRNA downstream 9703 13406164 ~ 13447748 (+) True mtrr
XM_034298306.1 mRNA downstream 578779 13975240 ~ 13980189 (+) True cbln2b
XM_034298235.1 mRNA downstream 837583 14234044 ~ 14295771 (+) True rttn
XM_034298236.1 mRNA downstream 837583 14234044 ~ 14295596 (+) False rttn
XM_026937910.2 mRNA downstream 901099 14297560 ~ 14309471 (+) False cd226
trnat-agu_17 other upstream 829 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 127687 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 673425 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 1229316 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 1637544 11738158 ~ 11748559 (+) True ankha
XR_004576981.1 other downstream 1855174 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 2169714 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 3711011 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 3711011 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 3888621 17285082 ~ 17300011 (+) True G333388

Expression Profile