RNA id: XM_026937949.2


Basic Information

Item Value
RNA id XM_026937949.2
length 4268
RNA type mRNA
GC content 0.44
exon number 20
gene id LOC113541141
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15398281 ~ 15414443 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACTTTAGCCGTGTTTGACGCGGAGGAATTTAATTTTAGTCCCACCCAAATTCCTAGAAGTATCTAAAGGGAATATCTTTGCTTTCGGTTTCAGTTTGAGTGTATTTGAGTATTTAACTCAGGGACACCACAGACAGAGCGGTTCTTGTACAAATGGCAAGAGTTTTGACTTTTTGCTCCACGGTTCTGACTGTGTTAGGGCTGAGCCAGTCCGCCACCAGGACCTATTACATCGGGATTCGAGAGCAATACTGGAATTACGCTCCCAGTGAGAGGAATCTAATCACTGACGTTGCTATCAAGCATGACAAGCATGCTTCTACTTATCTGTCCAATAGTCCAAACCGGATTGGTAGTGTGTATAAAAAAGCTGTGTATAAACAGTACACAGATAGGACTTTCACCATCGAGGTGCCTAAACCGGAATGGCTGGGATTCCTTGGACCTGTGATCCGTGCAGAAGTGGGTGATGACATTGAGGTGCACATGAAGAACTTTGCATCTCGGCCTTATTCAATCCATCCACATGGAATCCTCTACAAGAAGGACGCTGAAGGTGCATGGTATCCGGATGGTACATCTGGTGGGAATAAGAGTGATGATGCTGTGGATACAGGACAAGTCTACACATACAGATGGAAGGTGACAGAAATGTTTGCTCCTACAGAGTCTGACTCTAAATGTCTTACATCAATGTATCACTCTCATGTAAACGCACCGAAAGACATAGCAGCAGGACTCATTGGAGTGCTGCTCATCTGCAAGAAGGGAGCTCTGGACCCAACTGGACTTCACCAATCGGGCATGCCTCATGAGTTTTTCTTGATGTTCAGTGCAGTGGATGAAAATCTTAGTTGGTATCTTGAagaaaacattaacaaattCTGCCCTGAAGCTACTCATCTGAGAGAAGATACAGAGTTTCACCATTCAAACCAGATGCACTCAATAAACGGTTTTGCTTATGGCAACTTGCCAACACTGGAAGTATGTCTCAGAAGCCCTGTGTTCTGGCATCTTTTTGGTATTGGGAATGAGATAGATCTTCACTCCattcacttccatggccacaccCTGCTCAACCAAGGTCACCGTACTGATGTCCTCAGTGTATTTCCTGCCACGTCAGTCACTGCCAAAATGGATCCCATGACAACTGGGAAGTGGTTGTTCGGGTGTCAAGTTGATGATCACATGCATGCAGGTATGCAGGGCTTTTATGAGGTCTCTTCATGTGGAAATACTGCACCCACAGTGCCCAGTGCTGGGCATGTCAGGCGTTACTACATTGCTGCAGAGGAGATACTTTGGGAATACGCCCCCTCAGGGAAAAACAGACTGACCAACAGACCACTAAATGAAAAAGACAGTGACTCTGAAGAATTCTTCAGTACAGATGATGGAAAGCTGGGAGGAAAGTACTGGAAGGTCAGATACACTGAGTACCACGATGACACCTTTACTTCCAAAATCGAGCAAAGTGGTTCAGAAAAACACCTAGGCATTCTGGGTCCTGTCATTAGGGGAGAACCTGGTGATGTCATTGAGGTGACATTTCGAAATAAGGCACGTCGTAACTTCAGTATGCAACCTCATGGCGTGTCATATGACAAAGCTTACGAAGGAGTCATATATCAGGATGGTTCTCAGAAAGCAGGGGCCAGTGTGGCACCAGGTCAGACGTTTCCATATCGTTGGCGGGTGACAGAAGGCCCCTCGCCCAGTGACCCACCCTGCCTGTCATATTTGTATTACTCCGGTACAGATCCTGTTCCTGACACCAGCTCTGGTTTGGTGGGACCGTTACAGGTGTGCAGGAAAGGAGTTCTGGATGAGAGTGGTCGACAGcatatAGGGTCGGAGGTGCAGAAAgagtttttccttcttttcactGTGATGGATGAAAACAAAAGCTGGTATCTGCAGAAGAATATTGAAGCATTTGGTAGTGATGAGTCAGACCCAGAAGACTCAGGATTTCAGGAGAGCAATAAAATGAGCTCGGTGAATGGCTTCATGTATGGAAACCTTCCTGACCTTGATTTGTGTGAGGGGGACCATGTTGTGTGGCACTTGCTGGGGTTGGGCTCAGTGAATCTCTTTGGCGTTTACTTCCAGGGCAACACGTTTCAGCTGGATACCACTACACGTgacacactcactctcttccCTCACTCCAGTGTCACCGTCTCCATGACACCTGACAATGATGGTCTTTTTGAGCTGAGCTGTCTGACAGCTTCCTACTACCGTGGTGGCATGTGGCAGCTCTACACTGTCAAACGCTGCACATCGAGTCAGAACCCTGGTTCAGAAGTTACGACCTTTCAGCCCGACGTGTATTTCTACTTGGCTGCTGAAGAAATGGAGTGGAATTATGCCCCAAACCGAACATGGGAGTTGGAGAAACTTAACACTACGCTCAACAAAAGCTCTGGAAGTGTTTACCTCACAAAATCAGAGAAATCTATTGGGTCTGTATACAGAAAGGTGGTCTACCGCAAATACAAGGATGCGACCTTCACAGAACAGGATGTCAGTGGTTCTGATGAAGAGCATTTAGGCATTCTGGGTCCCATTCTCAGGGTGCAAGTTGGTGAGAAGGTCCAGGTTGTGTTTAAGAACAATGCCACAATCCCCTATTCAGTTCACGCTCATGGAGTGAAGACCAGTAATGCTCAACCTGTTTCTCCAGgtaaCACAACAACGTATAACTGGACTATCAGTTCAGGTCCTGGACCCACTGAGTCAAATTGCAAAACCTATGCCTATTACTCATCAGTGAACTTTCTGAAGGATTTGGCGAGTGGCTTGGTCGGGCCATTGGTGGTGTGTCGTAAGGGGACTCTGAATGAAAGCAGACGGCGAAATGACGTGGATAAAGAATTTGCTCTGCTCTTCATGGTGTTTGATGAGAATGAATCGTGGTATCTgcaggaaaatataaaaatttaccTGAACAAAGACCCTAATACTTTTGACACGAATGATCACCATTTTCTGGAGAGTAACATGATGCATAGTATTAATGGAAAGCTGTATGCTAACCTGCATGGTTTGAAGATGCAGGAGGGAGATCGGACTGAGTGGTATTTAATGGCGCTGGGGAATGAAGAAGATATGCACACAGTACACTTTCACAGTCAGAGCTTCATATACAAGACGGATCAGCCCCATAGAGCTGATGTGTATACCTTGTTCCCTGGAACCTTTAAGACTGTTGAATTACAAGCAGGAGCTCCAGGAACATGGCTCATCCATTGCCATGTGTCAGACCACATCGACGCCGGCATGGAGACAACGCTTCACCATCGAAGCTGCAAAATCCAAAGCTTGGACAAATGgCATTGTGTTTCTGCAGTGGTTTTGCCAAATACTGCTCACCATCACGCCCGCCTTCTGGCTCCATTAACTCAGCAGAGGATGGTTTTCACTTAACCACTACCTGTGAAGTTCtatttattaagttttatttagtttttaatagttttttttttacaagtgaCACTGTACATTTAGCACTTTTTTATTAGGCTTTTCTTCTTTATAGCAGAGACTAGTTACATTATAAGACATTATGTACTGAAGAAATAGTTATCAGTGTAGTGTATCGTGCAATGAGTGGAACATCCACAATGTAAGTACTGTACTGAAAGATTTAAGACTTGACACACTTCTCAGGAGACCTACTTGGCCACATGTGCCTTCAAATTTTCAACTggtccaaaaatatttttataatgggTACAATTGCACTACtgatattttttatccattaggTTCACTTCTATGCAGAgtgtaaatggattaaatttcTTTGTGACCATCATAAACTGTcatgtcagggttttttttcggGCGGGGGGTGGGGTAGGAGGTGTCCtggttttatttacaaaagaaaatcGAAGCATGCGTGGGTTTTACAGTACAGCAAAATTCAGATCACAGAAAATTTAATTCTGTGCTTTCAAACGttattttcaacatgtttatttCCAGATCTAGTTTTAGTTAGACTGGATAACATTTTTGCTCTCTAGGATGCCCCTGCAATCATCCCCAGTCATGATGGTATCATCCCCGACTTCCCCACCTTTAGGGCACGCCTCAATGTGAAATATTCCTGCAGTGAGGTTAGTGGCAGACACAAAACTTAGACCTCCGTGCACAAACACTTACAGATTAGTTTGAATAAAACCactttttaatttcatattttcatgGTGTCATCCTTGAAGTTTCAGATGTCACCgtccaacaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393844 lncRNA downstream 1149 15345272 ~ 15397132 (-) True G332580
TU393373 lncRNA downstream 601083 14714217 ~ 14797198 (-) True G332196
TU393330 lncRNA downstream 763355 14544032 ~ 14634926 (-) True G332164
TU393312 lncRNA downstream 833577 14537252 ~ 14564704 (-) True G332147
TU393340 lncRNA downstream 875666 14513735 ~ 14522615 (-) True G332169
TU393913 lncRNA upstream 151744 15566187 ~ 15566646 (-) True G332637
TU393941 lncRNA upstream 201057 15615500 ~ 15618841 (-) False sec61g
TU393956 lncRNA upstream 206063 15620506 ~ 15620717 (-) True G332676
TU393962 lncRNA upstream 215780 15630223 ~ 15630444 (-) True G332682
XR_003404161.2 lncRNA upstream 521385 15935828 ~ 15943189 (-) True LOC113541266
XM_026938050.2 mRNA downstream 18006 15337379 ~ 15380275 (-) True LOC113541204
XM_026938052.2 mRNA downstream 27714 15339501 ~ 15370567 (-) False LOC113541204
XM_034297961.1 mRNA downstream 109516 15285508 ~ 15288765 (-) True LOC117595668
XM_026938248.2 mRNA downstream 114126 15276583 ~ 15284155 (-) True LOC113541332
XM_034297841.1 mRNA downstream 123205 15273126 ~ 15275076 (-) True LOC117595763
XM_034298225.1 mRNA upstream 2661 15417104 ~ 15559455 (-) True LOC113541144
XM_034298226.1 mRNA upstream 2661 15417104 ~ 15514006 (-) False LOC113541144
XM_026937893.2 mRNA upstream 164832 15579275 ~ 15582034 (-) True LOC113541101
XM_026937817.2 mRNA upstream 201055 15615498 ~ 15618842 (-) True sec61g
XM_026938187.2 mRNA upstream 362578 15777021 ~ 15899598 (-) True LOC113541299
TU393587 other downstream 332471 14965813 ~ 15065810 (-) False LOC113541115
XR_003404167.2 other downstream 460877 14936886 ~ 14937404 (-) False LOC113541102
TU392350 other downstream 2720348 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 2720348 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 4315130 11082268 ~ 11083151 (-) True G330379
XR_004576965.1 other upstream 1416253 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 1416253 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 1701655 17116098 ~ 17139685 (-) False zbtb47b
XR_004576994.1 other upstream 1771081 17185524 ~ 17239106 (-) False vipr1b
TU395488 other upstream 2493451 17907894 ~ 17908812 (-) False LOC113541127

Expression Profile