RNA id: XM_026937952.2


Basic Information

Item Value
RNA id XM_026937952.2
length 3821
RNA type mRNA
GC content 0.45
exon number 17
gene id si:ch73-173p19.1
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15382986 ~ 15397527 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTAATCAGATGATCGTTGGCCCCGCCCACTGTTTACTGTCAGCGTGTTAtgattgaatcttttttttttaacaattaaaaaaataacatttattttcgTAACAAACGCTTTGGCAGCTTGACGAGGCACATTTAACAGTTATTTAATTCGGATTAAATGACGGATTCGGATTAAGCAGTTTAAAGCAGTTTTAATGGCGTCTTCAGCGACGCTCGGTGAGTTCATGCGCTGTCTCAGTGAAATGGGTTTCACTGAGCATCAGATTCAGGCTGCAGTTCAGGCTGGCTGTTTCTCTGTACCAGAAGCAGCTGAATGGATTGTGCGGGCTGGCAGTCCGAGACACACACTAATGCCACGTTCCGGACCAGTTACAAGTGCTATTGCTGCATTTAACCCTCCTAAAGATGCTCAAGGAGCTCAGACGGAGGGAAAAGgtgCTGATTTGGTGCTGCATCATCCTGCAGCAGAAACCGAACCTGTAAAGTCTCgaataaagcaaaacaatgaCTTTCTCGctcaggagagacagagagcagcagAACATGCCCGGGCCGAGAAGAGACaaaacacacaggaGCGAGAGTTAATCTTGAAAAGAATAGCAGAAGATCGCCGTGCTCAGCAGGAGAAACACACCATCACTCCAACTGTCAGTGAACGAGAGAAACCGAGTGAACGAGTGCAGAGCGGCGCAGACAGCAATTGCATTCTAATGatcCGTCTCCCCTCCGGCGAGtctttgcgtgtgtgttttccagCAGATGCTCCTCTCCGGGATGTCGTTGACCATGTCACTTCCCTCCAGCCGTCTCTTCCCTCATTCACACTTTTTCATGGTTTTCCTCGTCGGCGCTTCAGTGATGATGACATGTCACTGTCACTGCGCTGTCTCGGTTTAACACCAAACGCTGCACTCGTCCTTCAGGCCATCACTCCTCCTGATCCCTCCATCCCCGCTGCTGTCCATGATCCTGAGCCACCTCGCATTGACCCTCCtgcccagcagggggcagaTGTTTTACCACAACCTGTAGCTCCACCCCAGTTTCAACAACTACGCTGGGAAGACATGGTGCATGCTGGGATTGCTGAACCTCGTCACCGCTGggGCCGTGGACAGAGACTGGTGCCAGGAGAagaaggtgatgatgatgatgctggtgCTGATGAAGAACAGCCACTGGTAGATATTAATGCTGTACCTCGCCTTCCTTTCTTTAATGAGCTCAGAGATCAGGATCAGCATTACTGGCCGAACCAGGGAAACAGACTcggtgatccAGATGCCTCAGTAGATCCAGCAGAGGGCAGAGTTTTACCCGGTGAGGCAGCATTACAGCGTTTACAGAGAAATGATCAACAGCAACATCACCACACCGAGTCTCTGGCTCCCCACAAGAAACCCTGCAGTGTGCCCAAActtgttaccatggcaacacgcGCTGCCATCTCCCTCACCAGCGctCCTTATATGCAGTTCGTCAGCAGTTTTTCATGTTTGACCCCAGAGCTGGCTGAGCGTCTGTtgggtcacatgacctcagATCGCCTGCTGAACCCTCGAACTCTTCAGCTCTTCATTGGCTGCTCGCTTCGGAAGCTAACATTAAACAGCTACCCATACACCACCAACACACTGCTGCAGCAACTCAGCACatttacacacctcacacacctcagCTTGGTCAACTCCCCACTAATCACTGATTGTGGGCTGTCTGTGCTGTGTAAATTGGTGAAGCTGCAGTATCTGAATCTCTCGGCCTGCTCTAAACTTACTGACGGCTGTTTACACCACATGACACCTCTCAGATCCTTGTGTGTGTTGATTCTGGATCACACTAAAGTGAGTGATGCCGGTCTGCTGGTCTTCCTTCAGTCATCTCCTCCTGCACTTGTTCACCTGAGTTTAAACCAAACAGCTGTTACAGAGGAAACGCTAACtgcactgcgtgtgtgtgtaccacaGCTGCGTCTgctcagcatcacacacaccaggGTGTGTGACGTGTCTGCTCTGGCCAGTCTGCACGATCTACAGACTCTTCACCTTGACTTCACTCAGGTTAAAGAAGAATCCTTGCAGTGTCTTTCAGCGCACCGCAATCTATCATCACTCAGTCTTCACGGTGTTCCTGTCAGTAGCGGTGATCACACACTCGAGATCATCTCAGggCTGAATCTGACTCAATTAACACTTCCTGGTCGTCACTCAGTGACTGATGCTGGGCTTTTCTTCCTCTGCGCACACACTCTGCTGTCTGAACTCGACCTTAGCGACTATACGCACATTACTGACCAGGGCATCACACACTTGGGAAAACTGCCTCGGCTGAAGAAGCTTTCATTGAGTAACACTCCCCTCACTGATGCGGGCTTATCAGCTCTGTCCACTCTCACTCTGCTGATGGATGTGTGTCTAAACCGAACAGCCGTGACGAGCCGTGGAGTCACTGAGTTCATCACACGCCTGCCTTacctacaggttcTTGGTTTGTCTTGCACGCAGGTGGGAGATTCGGTACTGAAAGCTTTAATTCGTTGCACTGAACTGATCAAACTGAACCTGAGCAATACGCGCATCACCGATCGggGATTAAAGTTTCTTCACGGTATGAAACTGAGTCAGGTAAATCTGGACAGTACCGGTGTGACTGCAGGGGGCGTGGCCAACCTGATCTCCGCCTCTCCTCACCTGATCAACATCCGTGCCAATAACACGCGGCCGCTCCCTGCTGAACAACAAAGCGACGATGATGGTGGTACTGATGAAGATCGGCCATTACATTGAGACAGCTCTGAACAGGctattatgcacacacacatttcctagAGATTTTCATTACAAGCAAAGCCATTATTCAGTTGCTCTTTCTTGCTTCTGCAATTATCACATCTTAATCTTGTACTTAATAACATAGTAATAGTTTCAATAGTTTCAATCAAGAtagctttacaaataaaaaacaaataaatgcaataatgtaataatgcttttattaattaaaccaGTTAGCTTTGGTTAGCTTTGGTCTGGTTTTGGATATAACTAGGAGGCTTTGGCTGAAAGTAAGGGTTTCATCACCCAAGAAATTCAAACCCAGGTtgatttaccttttttttaatcaattttttgcattaataatgCTATTTTTGCAAAagcaaattaaagaaaataaactgtaGGGGATAATGTAAGCAGTTGTACTGATAAAATACTGGAAACATACTTATTTGCAAATTTACCAAAAGTAGTTACATATaacattttactaaataaaGTGTGTAACTACAGCGTTTATCAAtcagtcattattattattattattagtaacaatattattatgtataagtTGTGCCATATCATTCAGAATTACAAAATTAGGTAAATCAGAACAATTTTCAAGAATCAGACCAAGAATCAGTGTTTTTATGCAGTACTAAATTATTTAAGACTGTTAAGCTTGACACTGCAAAATATaactcaataaaaatatatatttttagatattgtttgtattttgtaataGTTTTGTATGAGATCATTAAAAAGATAACAAGTTATTACATATTGTAACTGTTGCTTACTGTACAGtacaaatgaatgatttttttttttttaaataccggGCATATCTCCTGAGTGATGTAGCCATCTATTCATCTAGTTTTAATCCTGCTGGGAGTACAGACACTTTAGTAAATTGAGCCTCGAGCTCAATGAAAGCAAAAGAGGCAGATTTGCACTTAAGCAGAATTTTTGATTTGTAGCTCTTTCATGTCATGCTCATGAACAATAAACTAATGTGTTCCCCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393773 lncRNA upstream 50554 15328614 ~ 15332432 (+) True G332527
TU393552 lncRNA upstream 68018 15223520 ~ 15314968 (+) False stau2
TU393555 lncRNA upstream 180681 15201817 ~ 15202305 (+) True G332348
TU393531 lncRNA upstream 269472 15065975 ~ 15113514 (+) True G332334
TU393529 lncRNA upstream 270463 15111663 ~ 15112523 (+) False G332334
XR_003404151.2 lncRNA downstream 16345 15413872 ~ 15418923 (+) True LOC113541145
XR_004576951.1 lncRNA downstream 173336 15570863 ~ 15579798 (+) True LOC113541248
XR_003404160.2 lncRNA downstream 173336 15570863 ~ 15571817 (+) False LOC113541248
TU393930 lncRNA downstream 194561 15592088 ~ 15617234 (+) True G332650
TU394071 lncRNA downstream 643857 16041384 ~ 16041587 (+) True G332788
XM_034298261.1 mRNA upstream 117091 15251636 ~ 15265895 (+) True si:ch73-173p19.2
XM_034298109.1 mRNA upstream 158395 15134353 ~ 15224591 (+) False stau2
XM_026938099.2 mRNA upstream 158395 15135024 ~ 15224591 (+) False stau2
XM_034298108.1 mRNA upstream 158395 15137731 ~ 15224591 (+) True stau2
XM_026937852.2 mRNA upstream 253383 15122477 ~ 15129603 (+) False flj11011l
XM_034297849.1 mRNA downstream 189775 15587302 ~ 15614891 (+) False tpk1
XM_026937807.2 mRNA downstream 190144 15587671 ~ 15614891 (+) False tpk1
XM_026937805.2 mRNA downstream 190278 15587805 ~ 15614891 (+) True tpk1
XM_026937806.2 mRNA downstream 190295 15587822 ~ 15614891 (+) False tpk1
XM_026937826.2 mRNA downstream 222621 15620148 ~ 15629965 (+) True panx1a
XR_004576981.1 other upstream 118399 15251635 ~ 15264587 (+) False si:ch73-173p19.2
trnat-agu_17 other upstream 1997712 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 2124570 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 2670308 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 3226199 12062332 ~ 12156787 (+) True prkag2a
TU393912 other downstream 168648 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 1709945 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 1709945 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 1887555 17285082 ~ 17300011 (+) True G333388
TU394792 other downstream 1889633 17287160 ~ 17302004 (+) False G333388

Expression Profile