RNA id: XM_026937955.2


Basic Information

Item Value
RNA id XM_026937955.2
length 2286
RNA type mRNA
GC content 0.41
exon number 6
gene id timm21
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13749291 ~ 13754357 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcatattttaatatgcTGCTATTTTGAAAGCTAACTGTCGTGCCAATGGCGTTGTCGGTGTTTTCACACTAATATGACGAGATTTTGCGTTTTAATGAGAATGTAGAGTTTCTCTATCAACAGAattctgaaataaaagtgttttttctatTCTactttttgccaaaaaaaaattgcagcttagCAAAAGTTTCAGGCTAGCGACGCTAACTAATTAGCCGAGGACTTAGCTGCTGTGCTGAAGgacttagctagctagaattGCCGTGTAACGTTAGATATTAATAGCGGTTATAATGCTTTATTCACTCCTATTCCGATTTGGCAAAGCTTCATACTGTGCACAGATATTAAACCGTGTCAATGCCCCGTGTCCTCTGTCAGCTTTGCATCTGCATAGCCCTGGTTTGACTCGGGTAAAGAAATGTGCCAGGGCTCAGGGGGCTTGTGTGCACTATTATAGAGTTTTAAGTCAAATGAGAAATGTTCATACTGGAGCTGAGTGCAGAAATAAAGCTCAGGATcaacacagagagaaggagctGTCAGCCTCCACCAGTCAGCCTTCTTCAGGCATCTCTGCTGCACAGAAAGTGAAGCAGGCTGGCAGAGACTTCACATATCTGATCGTGGTGCTTGTTGGACTTGGAGTTACAGGAGGACTCCTGTATGTCATCTTCCAAGAGCTGTTTTCATCATCAAGTCCAAGCAAAATCTACGGCAAGGCTTTTAACAAATGCAAGTCCCACCCAGAGGTAATTGGAGCCTTTGGTGAGCCCATTAAAGGCTACGGAGAGACCACACGCCGCGGACGGAGACAGCAAGTTAGTCATGTTGAGTATATGAAGGACGGACAAAAGCACATGAGGCTGAAATTCTACATTGAGGGTTCAGAGCCTGGACTGCGTGGCACCGTGCACTCAGAATCACGAGAGaatcctGAAAGCGGAAAATACGAATTCCGTTACATATTTGTGGACGTGGACACGTATCCCAGGAGGACCATCGTCATCGAGGACAACAGATGAGAATTTTCTGCAGGATTTGTGAAAGTGCTTCACTTGCAGCATTGCCAAAGCAGCtaaaagattttgtttttttaaataatgctaaaAGAATCATATAGTTTGTCATTCAGATTGCAGAATTCAGCTGGTTTAGCTTTATGGTGCTTCAGTGATCTGATCATGATCAGATGATTTGAGGTTTGCTGATTCAATTgctcattcaattcaattaaatgtaAGGAAGAAGCTGAAATTTTGGGAAACATATAGAACACACTTTTGGATAACAAAAAAAGGTAATGTATAGCACTTATgacattttggaaataaaataatgtgtgcaTATGTCTTTATGAAGTCTGACTTGCTGTTAACAGAACTTTGATAGGAAATATTTCTTAAACCTCTGAAAATCAGGAACTGTGatccagcagggggcagtatTGCACAATCATTTCAATATTCAAAGATTCAAGTAGCTTTATTGGGCTGGTAAAAGGCTTTATGCTGCCAAAGCACTGGTAACCTTAAATTACAGtcatacacatttacagaagTTCAATAAAGTAAGAGCAataagaagggaaaaaaatatagacaatgatttgttttattaccCAAATGTTACATGTCAAACTGAGCATGTTGTGCATGTTcacagtgttggtgttattgtgtgGTTGATGCTCCTGTTCCACTGCTTACACTTTTGTCgtgactgggtttcacaaagCTGGCAGCCAGGTTTGAGCTCGTTGAGGTTTCTCCTAGCAGGTGTGGGAGTTTGTTCTTGTCTGGCATCAGATTGAAGGCTTTTTCATGGGTTGTGAAGTGGAGAAAACATGTTTCCTTAATTTGTGAATAATTAGGGCATGTTGTTAAAAAGTGCAGTGCACTATGAAGTGCACTTCATTTTGTGTGCAGTGGGGGCACAGCCTGTCTTCTTTTGGTAGCCaggtctgtctgtgtctgcccGTCTCTATGGCGAGGTTGTGATCACTGAGTCTGGACATGGTCAGGACTTTTCTTAGTTTGGGGTCGGACACCGTGCTCAGGTATTCTGCCAGTTTATATTCTCTGTTTAGGGACAGGTAACATTGGAATTTACTTTGTTGAGCTGTTGCTTCTGTCCATCATtttagatatgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaataatttgatttgGTCTGTCTGAGGTTTTGTTCTGGAGTTTGGCTGGACATGTTTTGGATTTCTCTGTTATGAACAATAAAGCTATAAATCGATACATTCA

Function

GO:

id name namespace
GO:0030150 protein import into mitochondrial matrix biological_process
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex cellular_component

KEGG:

id description
K17796 TIM21; mitochondrial import inner membrane translocase subunit TIM21

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392679 lncRNA downstream 335480 13412902 ~ 13413811 (-) True G331569
TU392678 lncRNA downstream 341833 13406386 ~ 13407458 (-) True G331568
TU392674 lncRNA downstream 366856 13380609 ~ 13382435 (-) True G331565
TU392669 lncRNA downstream 401434 13343614 ~ 13347857 (-) True G331560
TU392655 lncRNA downstream 469905 13278136 ~ 13279386 (-) True G331546
TU392965 lncRNA upstream 4572 13758929 ~ 13759290 (-) False LOC113541105
TU393198 lncRNA upstream 712037 14466394 ~ 14466613 (-) True G332056
TU393340 lncRNA upstream 759378 14513735 ~ 14522615 (-) True G332169
TU393341 lncRNA upstream 763282 14517639 ~ 14521648 (-) False G332169
TU393312 lncRNA upstream 782895 14537252 ~ 14564704 (-) True G332147
XM_034297985.1 mRNA downstream 1219 13737766 ~ 13748072 (-) False si:dkey-118j18.2
XM_034297984.1 mRNA downstream 1221 13737766 ~ 13748070 (-) True si:dkey-118j18.2
XM_026938143.2 mRNA downstream 31176 13509875 ~ 13718115 (-) True sema5a
XM_026937940.2 mRNA downstream 343214 13397268 ~ 13406077 (-) True cct5
XM_034298206.1 mRNA downstream 377248 13361369 ~ 13372043 (-) True eif2s3
XM_026937896.2 mRNA upstream 3301 13757658 ~ 13762615 (-) True LOC113541105
XM_026937887.2 mRNA upstream 11502 13765859 ~ 13867147 (-) True neto1l
XM_026938268.2 mRNA upstream 200200 13954557 ~ 13968348 (-) True fbxo15
XM_026938270.2 mRNA upstream 200200 13954557 ~ 13963943 (-) False fbxo15
XM_026938271.2 mRNA upstream 201043 13955400 ~ 13968352 (-) False fbxo15
TU392350 other downstream 1071358 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 1071358 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 2666140 11082268 ~ 11083151 (-) True G330379
XR_003404157.2 other downstream 2818516 10923126 ~ 10930775 (-) False ackr4b
TU391129 other downstream 3226028 10522732 ~ 10523263 (-) True G330185
XR_003404167.2 other upstream 1182529 14936886 ~ 14937404 (-) False LOC113541102
TU393587 other upstream 1211456 14965813 ~ 15065810 (-) False LOC113541115
XR_004576965.1 other upstream 3076339 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 3076339 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 3361741 17116098 ~ 17139685 (-) False zbtb47b

Expression Profile