RNA id: XM_034297855.1


Basic Information

Item Value
RNA id XM_034297855.1
length 3452
RNA type mRNA
GC content 0.44
exon number 15
gene id plcd1a
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16985047 ~ 17014794 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGGTCTCAGAGGAGCTCAGGTGTGAGAACAGCTTGCTTATGTGGAGGGAAGAGTGAAAGGATGagatttaaatgtttacagCTGAAACGTTTTTACCAAGTGCAAGAGCCTGGAGGGTGATGCAAACCTGCAGTTCCTGACAAAAGGAGGAGACTTGACCAAGGTGAAATCCAACAAATGGAAGAAGAAACGCTTCTACAGGCTGATGGATGATGGCCAAACCATGTGGAAAGAGACGCACAAGGGCTTCAAGAAAGACCACACCTTCTCCATCGATGACATTGAGTCGGTCCGTTGTGGCCGTCAGACCGAAGGGCTACAGAAGTACACAGACGACACACTGGAGGATCACTGCTTCTCCATCATCTTCAAAGGCAAACGCAAGAATCTCGACCTGATGGCAGGCACCAGAGAGGAAGCCAAGAAGTGGGTGACAGGGCTGGAGAAGGTCATCACCAACATGCGCAACCTCAATTCACAGCAGAAAAGTGAACACTGGATTATCAGCTGCATGCGGAAGGCCGACAAAAACGGCGACAACATGATGACCCTGAAAGAGGTGAAGCACTTCCTGCGCCAGATCAACATCGAGGTGGATGACATGTACGCCGCCATGTTGTTTGAGAAATGTGACACATCAAGGTCAGGAACTCTGGAGGGAGAAGAGATTAAGCAATTCTATGACCTGCTAACGAAGCGTGAGGAAATCGACGTCATCTACGGGAAGTACGCTAAAACCGGTGGTCAGATGAGCGCAGGCGATCTACTAAACTTCTTAAAGCAGGAACAGAGGGAGACAGTGTCTCTGGAGAACGCACTGAAGCTTATAGACAAATACGAGCCTGATGTTACAGCTAAGCAGAATAAGCAAATGACCAAAGATGGCTTCCTGACATACTTGACCAATTTGGAAGGGTTGATCCTCAACCCCGCCCACATTAATGTGTACCAGGACATGAGGCAACCACTCAATGATTACTTCATCTCCTCCTCCCATAACACCTATCTGATGCAAGACCAGCTCAAAGGGCCGAGCAGTACCGAGGCCTACATCAGAGCGCTGTTGAAGAGCTGCCGCTGCGTGGAGCTGGACTGCTGGGACGGGCCCAACGGAGAGCCGATCATCTACCACGGCCACACGCTCACGTCCAAGGTGCTCTTCAAAGACGTCATCAAGGCTATCAAGGAGTACGCTTTTAAAACGTCTGAGTATCCAGTAATCCTGTCTTTGGAGAACCACTGctcagtggaacaacagaaACTCATGGCTCACCACATGACCTCCATCCTGGGCAGTGCTCTTCTCACACGCCCACTGGGGAAAGAGATTCCCGTCTCCTTGCCGTCGCCTGAGGAATTAAAGGGGCGGATCCTGGTTAAAGGTAAACGCCTCAACAAGCTGGACGTAGCATTTAACAACAACACGGACGATGTGGACAGCGTGTCTGAAGAAGATGAAGCCGCTGAAGCCAAACAGGGCGAACAGGAGACCAAAACTAAGaaaaaaaagatcaagcTTGCTAAAGAGCTGTCCGACCTGGTGATCTACTGCAAGAGTGTCCATTTCAACAGCTTCGAGCATTCACGTGAGAAACAGGCCTGCTATGAGATGTCCTCCTTCAAGGAGAGCAAAGCCAAGAATCTGGCAGAAAATTCAGCAACTGAATTCATCCACCACAACATGGACAAGCTGAGCAGAATTTACCCTGCAGGCACCCGGACAGACTCGTCCAACTACAATCCTGTGATGATGTGGAACGCAGGCTGCCAAATCGTGGCTCTGAACTTCCAAACTAGCGGCAAGGAGATGGATTTGAACCAAGGACGATTCCTGCCTAACGGAAAGTGCGGCTACATCCTGAAGCCTGTTTTCATGAGGAACCCGGACTCTCAGTTTGACCCCAACATGCCCACAGAACGAGGCTGGATCAGGAAGAAGCTCCTGCATGTCATGGTCATCTCAGCACAGCAACTTCCCAAACTGAACAAAGATAAACCCAAGTCCATCGTGGATCCCTTTGTCAAGGTGGAGATTTACGGAGTGCCAGCAGACCGAGCCAGCGCACAGACGACCTACATCAACGACAATGGCTTCAATCCAATGTGGAATCAAAACATGACGTTCACCATTAACGTGCCGGATTTGGCCTTAGTGCGTTTCGTGGTGGAGGATTATGACGCTGCGTCACACAATGACTTCATTGGGCAGTACACGCTACCTTTTACCAGCATGCAGAATGGATACCGCCACATTCCCCTGCTCACAAAAAGCCACGACGTCATCCCTTCAGCAAAACTGTTCGTCCACATCATGGTAATGGACCCGTAAAGCACACCGAACAGCGCTGAGAGCAATCACCTTTTCCACAGTCCCAAAAGCAGACCCTCTAATACAGAGCAAGAAAGACGTGTATGCGTGTGATGAAATACAGAGACGCTGGGTTAAAGGAGACTTCGCTTCTGAGCGAGATCAAGTGATCGTTTAAGGAAACTCtcagaatatatttatataaaatgtggaGGGAATGGTCACTGTGtaaacttttcatttaaaaagagagTTTATCTTTTACCTCCTTGTGAAATGACAATTTGTAATACTGTTATTTCctattaaatacaaatgtaaagaTTTATTGTGAAGAACCTCCAATGTGAGTGTGTCcggctgtgtgttagtgtgcacGTGCAAttgaaaacttttattttgagTTATCAATTAGGTTTTAATGTAAAGTgaacacacatcactacactgtctataaatatttgttcctttttttaacaggataaatataatatacaggAACATGAACAATTTACATTACACTAAACTActttattttggaaaaacattCAAAACTAAACGTCAGGAATTATAAGAAGGAATTTGACATGGGGTCTCCTGTGCAgaatcttttttaatttttatttttttaaataatcagtcCTAGTATAAGAAATGTCTGCTTCTTAAGCACAACTCTAAATAATGTCTGTTTGCTAAGTTTGCTATAGGGTCTTTAGTTGACATGTAATTTATCTCTAAATCTTCcagtttttttatattcatttatgatttatgagtTAACAGGGGCCAAATCCTGTTCTTGAGCTATGATTATTATGAGTAAGCACTGTGTTTCCTGCACCGCTGACCAGTTTAAGGTTAACGTCCGAGAATTTTATGATCATGTCATGTTGTTGTCAAGTCTGTGTCACTGTGCATTGTTAAACTGTAATGCTTGTATCACTATTTGACTGctctaaatattatatttttctgcTATATGTGGTGATAATCTGTTCAACTCagtctgtaaatgttaaacCAGTCATTGTTTATTCTCATTGTAATAGGACCAAGCAAGTCAGCTTCACTGACACTAATGAAATATCCTTCAAAGTCACTACTCTTTGACAAAACatctaaataaaacataaaaagga

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394629 lncRNA upstream 87557 16893006 ~ 16897855 (+) True G333244
XR_003404172.2 lncRNA upstream 95251 16888937 ~ 16890161 (+) True LOC113541357
TU394631 lncRNA upstream 95683 16888906 ~ 16889729 (+) False LOC113541357
TU394614 lncRNA upstream 155433 16732916 ~ 16829979 (+) False G333232
TU394762 lncRNA downstream 171335 17186129 ~ 17186675 (+) True G333360
TU395018 lncRNA downstream 348077 17362871 ~ 17363075 (+) True G333548
TU395063 lncRNA downstream 431391 17446185 ~ 17447043 (+) True G333582
TU395113 lncRNA downstream 525843 17540637 ~ 17541761 (+) False rnf6
TU395303 lncRNA downstream 652842 17667636 ~ 17667844 (+) True G333787
XM_034297857.1 mRNA upstream 24566 16953684 ~ 16960846 (+) True acaa1
XM_034298105.1 mRNA upstream 166973 16805650 ~ 16818439 (+) False LOC113541068
XM_034298161.1 mRNA downstream 59419 17074213 ~ 17085476 (+) True spag6
XM_034298162.1 mRNA downstream 59419 17074213 ~ 17085476 (+) False spag6
XM_026938124.2 mRNA downstream 62837 17077631 ~ 17085476 (+) False spag6
XM_026938111.2 mRNA downstream 71416 17086210 ~ 17098345 (+) True gars1
XM_034297884.1 mRNA downstream 85370 17100164 ~ 17109773 (+) False hhatlb
TU393912 other upstream 1418749 15566175 ~ 15566663 (+) True G332636
XR_004576981.1 other upstream 1720825 15251635 ~ 15264587 (+) False si:ch73-173p19.2
trnat-agu_17 other upstream 3600138 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 3726996 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 4272734 12706939 ~ 12712678 (+) True G331263
TU394735 other downstream 92678 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 92678 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 270288 17285082 ~ 17300011 (+) True G333388
TU394792 other downstream 272366 17287160 ~ 17302004 (+) False G333388
TU394797 other downstream 272366 17287160 ~ 17295054 (+) False G333388

Expression Profile