RNA id: XM_026937980.2


Basic Information

Item Value
RNA id XM_026937980.2
length 1536
RNA type mRNA
GC content 0.51
exon number 7
gene id pabpn1
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14565792 ~ 14577243 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGACCTAACGCCCCGCCCATGGCTTCCATTTCTGTTCTGGATCACACGGCGCAAAGCGAATAATACACATTTGGGTTTTTTCCTGAATAATATTGATGTGACTGATAATTATAGCGAACACAAGTCCTTCCTGGTCACGGCACGACAGAGAGTTTAGCTGGTCTAGCGAGTAGCAGTGAGTTATTTCTGGGAAGTGGTAAAGGTTTGAGTCTTTTGTACAGGAGACGGGCctctttattcctctttttaACTTTAGCGGCGTATTTTCCGCcgttttttttccaccttctGCCCCTCGCGCTCTCCCAGCGGCGTGAGTAGAAGCACGAGGCGCGCGCGGAGTGGCGGGAATCGGGCCGATGGCGGAGTTCGGTAACGGACTGGCGGAGGAATCTCTGCTCGACTCAGACCCCGGTCATCCGGAGCTGGAAGATCCGGGTGTTGGTGACGAAGAGCCGGGTTTAGATGAGGGAGAGGCCGCTATTGAAGACCCGGAGCTGGAGGCCATTAAAGCCCgggtgagagagatggaggaggaagCAGAGAAACTGAAGGAGCTCCAGAACGAAGTGGAGAAACAGATGAACCTTAGTCCTCCTCctgCTGGTCCTGTCATCATGTCCATTGAAGAGAAGATAGAAGCAGATGGAAGATCAATTTATGTTGGAAATGTGGATTATGGAGCAACAGCAGAGGAGCTTGAAGCTCATTTTCATGGCTGTGGCTCTGTTAACAGAGTCACTATCCTGTGTGACAAATTCACAGGACACCCGAAAGGGTTTGCATATATTGAGTTTGCAGACAAGGAATCTGTTAGAACAGCAATGGCACTGGATGAGTCCTTATTCCGTGGAAGGCAGATAAAGGTTGGGGCAAAGAGAACGAATCGACCCGGTATCAGCACCACAGACCGCGGGTTTCCTCGGGCCCGGTTCCGCTCACGTGGAGGAAGTTTCTCGTCTCGGGCTCGGTATTACAGTGGATACACACCACCCAGAGGAAGAGGACGGGCCTTCAGGTTTCAGGACCAGTGGAGGCTGAGTACTCCTCCTCCCCCTGTGGCTGCAGCGCCCCCTACAGTCTCACCatcgtctctttctctctctgctccctctatccctctatccACACTCatgtgggggggtgggggtggggcaCAGGGTGACCCCCGGCCCATTTACTACAACAACAAACGCTGAACACACGCACTCTCTcacatgcactaacacacacacatatatacacacacacatacacacaccccaccACATATTTATATAGCGAGAGCAAAGCAGCTTGTTAAAGTGGGAGAGAATGAGACGGTGAGGACAAGAACAGGTTAAAGGTTAAAAGGGAGGGATGCATTTCTAGGGCCCTAGAGGACCGATCCTGGGAATTTAAGGCTATTTAAGAAGGAAAGGAGCAAAGCTTTTATTTGTTGGGAGGGGGGTTGTGtggagaggttttttttttcccttgggtttttttttgttttgttttttgttttgagacGGGGAAGTGGGTttggggggag

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14396 PABPN1, PABP2; polyadenylate-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576995.1 lncRNA upstream 603608 13958024 ~ 13962184 (+) True LOC117595809
TU392599 lncRNA upstream 1183156 13380644 ~ 13382636 (+) True G331502
TU392593 lncRNA upstream 1203090 13361369 ~ 13362702 (+) True G331496
TU392595 lncRNA upstream 1204774 13360280 ~ 13361018 (+) True G331498
TU392561 lncRNA upstream 1275393 13287447 ~ 13290399 (+) True G331468
TU393268 lncRNA downstream 110921 14688163 ~ 14703270 (+) True G332111
TU393426 lncRNA downstream 367749 14944991 ~ 14945212 (+) True G332238
TU393440 lncRNA downstream 378618 14955860 ~ 14956067 (+) True G332248
TU393531 lncRNA downstream 488733 15065975 ~ 15113514 (+) True G332334
TU393529 lncRNA downstream 534421 15111663 ~ 15112523 (+) False G332334
XM_026937931.2 mRNA upstream 1118 14543991 ~ 14564674 (+) True zfhx2
XM_026937930.2 mRNA upstream 1118 14543991 ~ 14564674 (+) False zfhx2
XM_026937861.2 mRNA upstream 30472 14529664 ~ 14535320 (+) True LOC113541072
XM_026938139.2 mRNA upstream 48005 14486970 ~ 14517787 (+) True jph1a
XM_026937862.2 mRNA upstream 160030 14386961 ~ 14405762 (+) True crispld1a
XM_026937830.2 mRNA downstream 137553 14714795 ~ 14721577 (+) True xkr9
XM_034298216.1 mRNA downstream 219402 14796644 ~ 14848084 (+) False eya1
XM_026938195.2 mRNA downstream 219402 14796644 ~ 14848083 (+) True eya1
XM_026938197.2 mRNA downstream 219402 14796644 ~ 14848083 (+) False eya1
XM_034298215.1 mRNA downstream 219402 14796644 ~ 14848083 (+) False eya1
trnat-agu_17 other upstream 1180518 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 1307376 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 1853114 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 2409005 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 2817233 11738158 ~ 11748559 (+) True ankha
XR_004576981.1 other downstream 674393 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 988933 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 2530230 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 2530230 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 2707840 17285082 ~ 17300011 (+) True G333388

Expression Profile