Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026937985.2 |
| length | 1317 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 5 |
| gene id | chmp4c |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 11370263 ~ 11374505 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0015031 | protein transport | biological_process |
| id | description |
|---|---|
| K24782 | CHMP4C, SNF7, VPS32C; charged multivesicular body protein 4C |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU391437 | lncRNA | upstream | 15262 | 11354620 ~ 11355001 (+) | True | G330457 |
| TU391431 | lncRNA | upstream | 15262 | 11354686 ~ 11355001 (+) | False | G330457 |
| XR_003404149.2 | lncRNA | upstream | 368425 | 10998040 ~ 11001838 (+) | False | LOC113541116 |
| TU391308 | lncRNA | upstream | 368427 | 10998030 ~ 11001836 (+) | True | LOC113541116 |
| TU391307 | lncRNA | upstream | 376010 | 10993824 ~ 10994253 (+) | True | G330350 |
| TU391617 | lncRNA | downstream | 8931 | 11383436 ~ 11383662 (+) | True | G330616 |
| TU391882 | lncRNA | downstream | 451634 | 11826139 ~ 11826390 (+) | True | G330856 |
| TU391895 | lncRNA | downstream | 499487 | 11873992 ~ 11874192 (+) | True | G330869 |
| TU391946 | lncRNA | downstream | 521161 | 11895666 ~ 11895891 (+) | True | G330908 |
| TU391950 | lncRNA | downstream | 569525 | 11944030 ~ 11946238 (+) | True | G330911 |
| XM_026938117.2 | mRNA | upstream | 61651 | 11122395 ~ 11308612 (+) | True | myrip |
| XM_026938118.2 | mRNA | upstream | 61651 | 11122395 ~ 11308612 (+) | False | myrip |
| XM_026938120.2 | mRNA | upstream | 61651 | 11122395 ~ 11308612 (+) | False | myrip |
| XM_026938121.2 | mRNA | upstream | 61651 | 11130682 ~ 11308612 (+) | False | myrip |
| XM_034298230.1 | mRNA | upstream | 61651 | 11231993 ~ 11308612 (+) | False | myrip |
| XM_026938251.2 | mRNA | downstream | 3796 | 11378301 ~ 11382806 (+) | True | LOC113541334 |
| XM_026937960.2 | mRNA | downstream | 16804 | 11391309 ~ 11486305 (+) | True | asap1b |
| XM_026937973.2 | mRNA | downstream | 114411 | 11488916 ~ 11553217 (+) | True | fam49bb |
| XM_026938296.2 | mRNA | downstream | 342910 | 11717415 ~ 11743711 (+) | False | ankha |
| XM_026938297.2 | mRNA | downstream | 342993 | 11717498 ~ 11743711 (+) | False | ankha |
| XR_004576967.1 | other | upstream | 386054 | 10874209 ~ 10984209 (+) | True | acad11 |
| XR_003404155.2 | other | upstream | 386054 | 10874209 ~ 10984209 (+) | False | acad11 |
| XR_004576968.1 | other | upstream | 387048 | 10874209 ~ 10983215 (+) | False | acad11 |
| XR_004576969.1 | other | upstream | 387048 | 10874209 ~ 10983215 (+) | False | acad11 |
| TU391206 | other | upstream | 395348 | 10973264 ~ 10974915 (+) | True | G330257 |
| TU391847 | other | downstream | 363653 | 11738158 ~ 11748559 (+) | True | ankha |
| XR_003404147.2 | other | downstream | 687827 | 12062332 ~ 12156787 (+) | True | prkag2a |
| TU392341 | other | downstream | 1332434 | 12706939 ~ 12712678 (+) | True | G331263 |
| TU392569 | other | downstream | 1883389 | 13257894 ~ 13258416 (+) | True | G331476 |
| trnat-agu_17 | other | downstream | 2010696 | 13385201 ~ 13385274 (+) | True | trnat-agu_17 |
