RNA id: XM_026937989.2


Basic Information

Item Value
RNA id XM_026937989.2
length 8752
RNA type mRNA
GC content 0.46
exon number 31
gene id map3k15
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20116014 ~ 20152049 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCACCCGTGCAGCTCAGTGGTGTTGAGTCGCAGTGTCTCCACCTCGGCATGTTCACCTCTGCGCTCTCACGCTTCTAGATTGTTCTGGACTTTTGGAGACTTTTGAGGACTTTCAGGTCGGATGAGGCAGAAATAAACTTCCTGACTGACCATGACAAGCGTTTTATATTTAGCTGCCGGACTTTACAGAGTGAGGAGAGAAGAGGGGAagtgaagtgagagagagagagagagagagagagatttttactGGAATTTCTGCGGAAACTCGCGTGCAAACGGATCCACAGGAGCAGTGCCACAGACGCCAGAGGAGCGGATCAGAGACACGCTTCATGGTCAGTGGTCAGGGATGAGAGCTGATCTGATGAGCAGGAGGTCTGTGCGCTGCGGGGACTCGAGCGCGCGCACCGGGCCTCCACCCGCACCCTGCGCTCATTAGAGGCCAGAGAACCAGGAacgaaccacacacacacacacacacatacacacacacacacacttcttgcGCTGTGATGGAGGCCTCCAGCCAGGCGGCGGCGGAGGCAGGTGGAGATCATGCAGCCAGCGTGACGGTGGCGGCGGCGGAGAGAGCAGACGTCCCGAGTCCGAGTCTGGTGTCCAAGCAGCGCAGTCTGCGTGCCGTGTACGTGCTGAACGACGGGCTGAAGGCGGTGGCGGCGAACAGCCCCGAGTCCGGAGCGTTACAGTGCCTGCAGCGAGCCTGCGACGCCGAGAGCGCcatcctcaccaccgtcacgtTCGGCAGGCTGGACTTCGGCGAGACGTCAGTGCTGGACACCTTCTACGACGCAGACATTGCGGTGGTGGACATGAGTGATGTGTTCCGGCAGCCGTCCCTCTTTTATCATCTGGGAGTTCGTGAGAGCTTCGACATGGCAAACAACGTCATCCTGTACCATGACACCGACCCTGACACGGCACAGTCTCTGAAGGATATGGTGGCccagaaaaacacaGCCTCCAGTGGGAATTATTACTTTATCCCGTACGTGATGACGCCCAGCAACGAGTACATCTGCTGTGAGAACGTGGCCCAGCGGCGGGCGTCGGAGTACATGCAGCCCAGCTGGGACAACCTGCTCGGACCTCTGTGCGTGCCGCTGGTGGACCGGTTCGCCAGCCTGCTCAAAGACATCCACGTCACGTCCTGtgcttttttCAAAGACACGCTGCTGAATGACATCCGAAAAGCTCGAGACAAGTATCAGGGCGAGGAACTGGCCAAGGAACTGTCTCGAATCAAGCTGCGCATCGACAACACGGAGGTTCTGACGCAGGACATCGTCATGAATCTGCTCTTCTCCTACAGAGACATACAGGATTACGATGCCATGGTGAAACTGGTGCAGACGCTGGAGATGTTGCCCACATGTGACCTCGCCAATCAGCCCATGATCCAGTTCCATTACGCCTTTGCCCTCaacaggaggaaCAGTCCAGGTGACAGGGAGCAGGCTCTCCGTGTGATGTTGCAGGTCCTGCAGTCATGTGACCACCCGGCTCCGGACATGTTCTGCCTGTGTGGTCGGATCTATAAGGACTTCTTCCTCGACTCGGAGTGTAAAGACACGAAGAGCCGTGACAACGCCATCCAGTGgtacaGGAAGGGGTTCGAGCTGCAGCCCACGCTGTACTCGGGCATTAACCTGGCCGTGCTGCTCATCGTCGCTGGACAGCAGTTTGAAAGCTCCATCGAGCTCCGGAAGATCGGAGTCAGGTTGAACAGTCTTCTCGGCAGGAAGGGGAGTTTGGAGAAGATGAATAATTACTGGGATGTTGGTCAGTTCTTCACCGTTAGCATGCTGGCTAACGACATCCCTAAAGCCGTGCAGGCGGCCGAGAAACTCTTCAAACTCAAACCTCCAATCTGgTACTTGCGCTCGGTGGTGCAGAACCTGAAACTCATCCAGCACTTTAAGAAGCAGAACACGGAGCACTCGGCTCAGAGGGAGAGACTCAACTTCTGGATGGACATCATCGTAGAAGCGACGCAAGGAACCACCAACAGCCTGCGCTTTCCGGTGTTGATCCTGGAGCCCACTAAAGTTTATCAGCCCTCGTACGTGTCCATCAACAGCGAGGCGGAGGAGAAGAACGTCTCCATATGGCACGTGTCTCCTGCGGAGACGAAGGGAATCCACGAGTGGAACTTCACAGCCTCATCTATCAAaggaatcagCATCTCCAAGTTTGACGAGCGCTGCTGTTTCCTGTACGTCCACGACAACTCGGATGATTTTCAGATCTACTTCTCCACTGAGGAGCAGTGTGGCAGGTTCTGCTCCATGGTGAAGGAGTTGATCTCAGACGGATCAGGAAATGCGGTGGAGCTGGAGGGCGAGGGAGACGGAGACACGCTGGAGTACGAGTACGACTACAATGAGAACGGGGACCGGGTGGTGCTCGGGCGGGGCACGTACGGAGTGGTGTACGCTGGGAGAGACCTGAGCAACCAGGTGCGCATCGCCATTAAGGAGATCCCCGAGAGGGACAGCAGGTACTCGCAGCCGCTGCATGAGGAGATCGCGCTGCACAAATACCTCAAACACAGGAACATCGTGCAGTACCTGGGCTCCGTGTCCGAGGACGGATACATCAAGATCTTCATGGAGCAGGTTCCTGGGGgtagttTGTCAGCGCTGCTCCGGTCGAAGTGGGGTCCTCTGAAAGAAGCCACCATCATCTTCTACACGCGTCAGATCCTGGAAGGTCTGCGATACCTGCACGAAAATCAGATCGTCCATCGAGATATTAAGGGAGACAACGTCCTGGTGAACACCTACAGCggcgttttaaagatctccgactTCGGCACGTCGAAGCGTTTAGCCGGAGTGAACCCCTGCACTGAGACGTTCACCGGGACTCTGCAGTACATGGCTCCTGAGATTATTGATAAAGGTCCTCGGGGTTACGGAGCGCCGGCTGATATCTGGTCTCTCGGCTGTACGATTATAGAGATGGCGACTGGAAAACCTCCGTTTCACGAGCTGGGCGAGCCGCAGGCGGCCATGTTTAAGGTCGGGATGTTTAAAATCCACCCCGAGATTCCCGAATCCCTTTCCCCTGAGGCCAAGTCCTTCATCCTGCGCTGCTTCGAGCCCGATCCCAGCAAGAGAGCGACGGCCGGCGACCTGCTCAAGGACCAGTTCTTACGCCACAACATCAAGGGCAAGAAGAACAAGATCGCCTTCAAACCTTCAGattatATCCGCAGTGTGTCGCTGCCTGTGCAGTTGCAGGCTGAAGCCACCGggagcagcagcagtgagccGGGCTCTGTGTCTCCGGACTGCGACTCCAAACACGACGTCTTCTTCAAGAAAAACAACCGCTCGGGCTCCGAGAACCTCATCAAACCCACGACATCCAGCTTCCTCAGTGTTCCTGATGAAAGCCCGACGTCAGAGGACCGGAGTTCTCCAGCCTCGTCTGAGAACAGCGACTCGGGACTCTTCCTGCTGAAGAAAGACAGCGAGAGACGAGCAATCCTCTACAAAGTGCTGAACGAGGACCAGGACAAGGTCACGTCCAACCTCCTGGAGAACCACATGCAGGGCAGCACAGAGGAGCTGAAGCTGTCTGTAGATCACATCAAGCAGATCATCTGCATACTGCGTGACTTCATCCGTTCTCCCGAGCGCCGCGTCATGGCCTCCACCATCTCCAAGCTCAAACTGGACCTCGACTTTGACAGCACCTCCATCAACCAGATCCAGCTGGTCCTGTTCGGCTTCCAGGACTCgGTGAATAAAGTTCTGAGGAACCATCACATTAAACCCCACTGGATGTTTGCGATGGACAACATCATCAGGCGCGCCGTCCAGGCTGCGGTCACTATATTAATTCCAGAGCTGCAGACTCACTTTGGCCCGGCGTCCGAGAGCGAAGGAGCCGAGAAAGACGCCGACGACGTGGACGTGGAGGAGGACGGCGACTTCGGTGCCGTGGAGAACGTCGCTCCGGAGGACACGGGCCTCACCTCGGGGGTCAGCACCCTCAGCTCAGTCATGTCCCACGAGTCCCAGCGGCCTCAGCATCCGCTCGGAGCGCAGCTCACACGCCTCAAGCAGGAGACGAGCAGGCTCCTGGAGGAACTGGTGCAGAAGGAGAAAGAGTACCAGCAGGTCCTGAGGCAGACTCTCCAGCAGAGGGCGCACGACCTGGAGCTCTTCAGACTGAAAAACCAGCCTGCAGCTATGAATAACGGCGTCCTCTCAGTAGAAGCTCCTCCCTCCATCTTCCACATGTCAGCAGAGCCGGAAGCAGATAAGGAGCTGACGGACTGGCTGAAGCAGCAGGGTGCCGATTCAGAGACCATCGACAAGTTCGTATCGGAGGATTACACGTTAAACGATGTTCTCAACGACGTCACCAAAGACGACCTGCAGTACATGAGGCTGAGagGCGGTGTGTTGTGCCGTATCTGGAGAGCCATCCAAAGGCACCGAACCCGAGAGCAGAGGAGAATACGGAGCAATGATGAGACCTCTGAGGGATGAGCAGAAGCTCGGTTCTCCTTCTGAAGAACTTCTGAATTGACCTCACACTttaaagcgcacacacacacacacacacacacacacacacacacacatacacacacacatgatcctaacacacacagatgtggaAAAATTCCTCCGCTGTGTTTCCGCCTCACTCCACTGCTTCCTGTGTTCCCTTTTCACCTCACATTTGCATGCGAGGCCTTTCCCGCCTTTCCCATGACGTCCATGATGGATAAAACCGTTCCTCTGACCTTCGCTGGGGAAAATCCACTGCACTCTTCTGGAcgagtctgtgtttgtgtttgtgttctcgtcattgttgttgttgctgttgctgtttttaGTATTTTCTCTACTGACTTTGTGATGTTGACTGCAGATCCTGCGATGTGATTGGCTGTCACAGTCGTGCATTCCTCACGCTCGCACTCTGAAAGTGACACGTGTTCGGAGACGACAGGTTGCCTGATATAGTGACCTAACGTGACAACAGGGAACATGAAGgtctatttttgtgttttgatgcACAAGACTGAACAAGTTGtcaaaaaaaacagattcacgAGCATCACCAAGtcctcttctttcttcctcctgTTGGACTGCTTCATGGATAATATTTAAACttctgtgtaaattcagttatgaACTCTAAAAGCCATATTTATTTAACCGTAACCCTGAATATTTGCGAATAATTCAGAATATTGAAACACGAGTGAATAAATCAAGCAAAGCCCTGATTATTTAAAAGGAAAGTTGAACATGTTGTAAAGGTTCATTTCACTcagagcattaaaaaaaactctaaatacAGATTATTTTCAGATTGtgtacagtgcaaaagtttgcacacccttaggacaaaatgtaGAAGATAAAGAAATGTTCAttccttaaaaaaataacatatagTTCAGATGAATCGAAATGATTTCAGTTCAAAGGTTTGCAGTATTAGATAAATATTGTCACAGGGTCATTgcaaaagaattttttttctgctttgatTTTTCTACGTTTTGGATTGTTCCAGGACAATTCACATTTCTATTTTGTTTGtagataaattataatatagaGCTACAAAAGTTATGCTTTCCATTCAACAGCCTtagggggcacaaacttttgcactcaactgtaagTTTCACTTGAATATAGaaagccaatcagattgcaacctttaagattctgaagcttttggccagaaaagtgtaagTAATTAGACCTTCAATTAATAGTGGAAAAGCCACAAAAATGGCATCAGTTcatctgttcaaaagtttgtgcccccctTTCTaagtgtgatataaatattctctacaAGGTCTCTTACAGGGTCACtggaaaaattaattttttctgCTTTCATGATTGTTGTCTTGTTTCAGAACACACCcacattttatgtttaaacatttcattttgatgaattataaatgaattatgaatatgaattttaaaacaGAGCTGCAATTTCCATTTCTGTTTCCTATTTTCAAAAAATTTGgggggtgtacaaacttttgcattcgatttatgttttattttaaaatgttggggtgttaaaaatgtttgcGTGTCCTGACAAACATATAAACGAGCAAGTAGCATCGATTCAGTGGTTCAGTCaaactaaaaaatattaaaaaatttttagtCAAACTAAAAAATACGAAAAacgctaataaataaaattaaggcttatttttatatttagacaCCATTTCATTAATTAGAAGCTTTTACAAGTCAGTGTTAATAAATTTGCTTCTGGTGGCTGTTTAAGAGCAAGCTGCGCCAGTCGCAGAGATGcgtaataattataaatttatatttatttttatataaaacatacactTTTCCATGAAGTGACTATAAAGATTAgaaagtaataaatatataaataattttttattttataatttatgattttataatatttatagttGTATATTACACTGGAGTATGAAGATTGATgaagatttaaatttttatgattcatattttcatattttaaaaatatacactagCAGTCAAAAGtttaacacactttatttttatgtttttaattctttaaagaCACTTTAAAGGTTTAATGCTGAAAACTTTAAGACAAACGGGTGATAAATATTGAAGTATAAGTacatgtatatgtttatttctgaatcacaatgtattttttaaaaatagcataaaTTTTACGGAGCTCAGGTTCTTTGGAAAGATTAAGAAAAGCCTCCTGAGTGAAGCTCCACCTGAAAGAGGGTgagaagaatttaaaatataatggtTTTAGTTTGTTTAACACTTCTCTGAGTCACACCTTCATTCCACACGTGCTATTTCACAGTGTTCatgtttcattattattctaaaacagcagaaaaatgtAATACTAAAAATAAGTGAAGATCTTCTCTAAGAAGGGATGCAGAAACTTTTGACTCATGGTGTATTTAGAGCTCAAACGTTGTGCAGATCTCCTGGTCCAGGCTGAAGCGGCCATGCTGAAGAGCTTTAGAGTGCGTTATTGTGTAACATTCGCGCTGTCATGGCACGACACCTTACCCATGGAAGCGAGAAAGTTGCGTAAAACATTGAGGTGCATTTTATCTCACGACTTGCAAAATTTTTAGCCACGAAACTAACCGTGATCAGTAGCACTATTCTTACCCCAGAAAAGCATTTACAACATTTCACCCTCGGGGAGAAAGTCGATACGTTCAGAAACGAGTACAACATTCctgaataattaataacagCGCTGTCGTTTCACACACCCAGGTTCACTGGAACTCGCTGaggctgtgtgcgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgcgtgtgtgtgtgtgcgtgcaagaGTAAAACATCCACCAAATAAGTATGCAGTTTGAGCTGATTTTGTTGTTGAGTAAAAGTGTCAAACAGTGGGCCAAGTCGATGCTAAGTCGAGTCATTTGTCACCTGTGTGATTTAGCGCAGCTTTGAGGGAAACATGATTGCGTGAGTAAATTAATAcaactgaagggcaggtattgaacttgtgcacaaacttttgctgaaataaaaccattttgtaATAATGAGAGAATTTGGCAAAGTTACGGTTTAATAGCATGTCGTTTTCTAATAAGACTACTGGTTGTGTTTATCAGTGTTTTACACAACCTGAGCTCATCATAGCTAACAAAAACAAGTAGCACCCGCAAAAATCTCGTACATTTACGTAGCTATGTGACGTCATTAAGCAATTATTCTTTGTAATCAATCAATCCACTAACAAACCACACGCACATCTTTTTGGGATcgtagtaaatcagggcctcaAATGACGTAAAAATTTTGAATTACATGAATCATCACACAATCACTCAATCACACAAACCTGAGCTCTGATtgaaaatcttaaatattcTCACAAGCAAGATGAAAAAAAGCTACAAGCCATAACTCCGCCTCTCAGTTTAActttaaccaatcacattcattcatacagAATTTGGTCACATGACTTGATGTTTTCGACTTGTGGCAATTAAGCAAccatgtttaattttatgtatttatgtatgtgatTTAAATCtagtaaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtttaaagctcTATATAATTCTCGTTTGGCTTTGCTTCAGTTCAGACTgtttataaaagtgaaatatgaAGTCAAATGATGGACGTTTAAGACCAAAGCACGTGAAGTGCCTTAATCCTGAACGCTGTGTGTAAATCCTCATTATTTTTCTCCTGATGTGTTTTAGTAAATCTTCTGTGTTTTATCTCTgatctgtattttgttttttggtgaGGAATCTGTGCACCAGTTTGATttatcactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatcagggTTTCTGTAGAATGTGGAATGATTTTGTATACATCACTGGACTTCATGGAggaaatattttctgtattaactGCAGAATGTGGACTAAAGCATGCACAGATACAGCAGCAGAATGTGTTAAATATCTGGCCATCTTTCACCTTTAGTGTTCATTCAGTTGTGTTAGTGGAATCTCAAACCtcctgaaaatgtaaatttccTACCAGTTTTCTCAAACTAGAGAGACTAGAAGCCTGTTAATGTCAGTGTGATGATTCACTGTAGTAAActtttgttctttaaataaacactttgagGCACAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397127 lncRNA upstream 57192 20058374 ~ 20058822 (+) True G335377
TU397088 lncRNA upstream 86523 19965544 ~ 20029491 (+) True G335345
TU397044 lncRNA upstream 127978 19985544 ~ 19988036 (+) False camk2n2
TU397022 lncRNA upstream 233178 19870896 ~ 19882836 (+) False smpx
TU397133 lncRNA downstream 22729 20174778 ~ 20189323 (+) True G335381
TU397134 lncRNA downstream 22940 20174989 ~ 20189323 (+) False G335381
TU397137 lncRNA downstream 55475 20207524 ~ 20208617 (+) True G335383
TU397353 lncRNA downstream 108522 20260571 ~ 20260807 (+) True G335558
TU397355 lncRNA downstream 117506 20269555 ~ 20269825 (+) False mynn
XM_034297988.1 mRNA upstream 3623 20050736 ~ 20112391 (+) False sh3kbp1
XM_034297991.1 mRNA upstream 3623 20050736 ~ 20112391 (+) False sh3kbp1
XM_034297987.1 mRNA upstream 3624 20050736 ~ 20112390 (+) True sh3kbp1
XM_034297990.1 mRNA upstream 3624 20050737 ~ 20112390 (+) False sh3kbp1
XM_034297992.1 mRNA upstream 3624 20080226 ~ 20112390 (+) False sh3kbp1
XM_026938016.2 mRNA downstream 8218 20160267 ~ 20163036 (+) True ccl20b
XM_026938015.2 mRNA downstream 12718 20164767 ~ 20167147 (+) True LOC113541177
XM_034297993.1 mRNA downstream 21051 20173100 ~ 20188652 (+) True tfr1b
XM_026937990.2 mRNA downstream 42011 20194060 ~ 20207270 (+) False tnk2a
XM_026937993.2 mRNA downstream 42011 20194060 ~ 20207270 (+) False tnk2a
TU396960 other upstream 326956 19788583 ~ 19789058 (+) True G335231
TU396585 other upstream 432144 19678481 ~ 19683870 (+) True si:ch73-264p11.1
TU396584 other upstream 432144 19679997 ~ 19683870 (+) False si:ch73-264p11.1
TU396524 other upstream 538941 19576111 ~ 19577073 (+) True G334838
TU396402 other upstream 755277 19339206 ~ 19360737 (+) False dap
TU397154 other downstream 8351 20160400 ~ 20163106 (+) False ccl20b
TU397368 other downstream 122071 20274120 ~ 20275691 (+) False lrrc34
XR_003402672.2 other downstream 592700 20744749 ~ 20764373 (+) True vipr2
XR_003402673.2 other downstream 592700 20744749 ~ 20764373 (+) False vipr2

Expression Profile