RNA id: XM_026937990.2


Basic Information

Item Value
RNA id XM_026937990.2
length 4671
RNA type mRNA
GC content 0.49
exon number 16
gene id tnk2a
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20194060 ~ 20207270 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTATAGCAGGATAATCCCGACACACACAGGACTGAGCGCAGCTGAAATGCAGCTGAAATTAACGGGGAATTAACGGGGAATTGAGGAACATGAGCTGAGCGCGTGCTGAATCCGTTCCAGAGCAGATATGCAGTCGGACGAGGGGACGGAGTGGCTCATGGAGCTGCTCACAGACGTGCAGCTGCAGCAGTATTTCCTGCGAATCCGAGACGAGCTTAACGTCACTCGTCTCTCTCACTTCGACTACGTGAAGACCGAAGACCTGGAGAAGATCGGCATGGGGCGGCCAGGTCAGCGGCGTCTGTGGGAAGCAGTGAAGAGACGCAGAGCGATGTGTAAACGCAAGTCGTGGATGAAGGTGTTCACAGGTAAGAGACCGGACACGGAGGCTCAGCCGGGAGTGACGTTTCGGGATTCGTCGCCCTGCAGCATTCCGGCCGAGGCTCACGGTGAATCCCAGCCGGAGGCTCTGACCTGTCTGATCAGCGACCGAGACCTGACGGTGCTGGAGAAACTCGGAGACGGATCGTTCGGCGTGGTGAAGAGAGGGGAGTGGCATGCTCCGTCTGGACGAGTGctGAACGTTGCTGTGAAGTGCCTGAAGACGGATTTGCTGGATCAGACGGAAGGTCTGGACGATTTCATACGGGAAGTGAACGCCATGCACTCCCTGAATCATCAGAACCTCATCCGGCTGTACGGAGTCATCCTCACACACCCCATGAAGATGgtgacaGAGCTGGCTCCACTTGGTTCTCTGTTGGACAGGTTGAGAAAGCGGCAGGGTCACATCCTGATCTCGGTGCTATGCCGCTACGCCGTGCAGATCGCGTGTGGAATGGCGTACCTCGAGTCACGCCGCTTCATCCACCGAGACCTGGCCGCTCGCAACATCCTGCTCGCCTCCAACGACCTCGTCAAGATCGGAGACTTCGGCCTGATGCGTGCGCTGCCCAAGAACGATGACCATTACGTGATGCAGGAGCACCACAAGGTTCCGTTTGCCTGGTGTGCTCCAGAGAGCCTGAAGACCAGAACCTTCTCTCATGCCAGTGATACCTGGATGTTTGGTGTGACGCTGTGGGAGATGTTCAGTCACGGCCAGGAGCCATGGGTCGGCCTCAATGGCAGCCAGATCCTCCATAAGATCGATAAGGAAGGCGAGAGGCTGGTTAAACCCGAGGACTGTCCTCAGGATATCTACAACGTCATGCTGCAGAGCTGGTCTCCAAAACCCGAGGACAGACCGACGTTCGTGGCTCTGAGAGACTTCCTCGTGGAGACGATGCCTACGGACATGAGAGCGCTGCAGGACTTTGATGAACCGGACAAGTTGAAGATCCACGCCAACGAAGTCATCACTATCATCGAGGGCAGGGCGGAGAACTACTGGTGGCGAGGTCAGAACCGTCAAACTCTGAAGGTGGGTCAGTTCCCCAGGAACGTGGTGACGTCTGTAGCTGGTCTTTCTGCCCATGACATCAGCAGGCCTCTTAAACACAGCTTCATCCACACAGGCCACGGAGACACCGACCCTCACCGCAGCTGGGGCGCTCCTGATAAAATCGATGATATATACCTGGGGAACCCCATGGACCCCCCTGATGTTCTCGGGATGGATCCGAATGCTGACAGACCCACTAAATTACCAAACCGAGCCAAAAAGCAACCTCCACCTCGTCCTCCTCAGCCGGCCATTCTTCTCAAGAAGCCTTTCTATGACTCCGTGattgacgatgatgatgatgatgacgatgatctCATAGTCACTGGACTGAAGAAGCTCTCTCTGAAAGCACCGTCATACCTCGGGCTACGCCTTCGTCCGTGGGAGAACTCGGACCCGGCCGATCACCTCAGTGAGGTCTCGCTCATCGACTTCGGAGACGACAGCTTCAGCTCCGCCTCGCCTTCCCCAATTACGGAGACTCCCGCCTCCAACTCCGCTCCGTCTGGAGCCTCCATCCTGGATTCTGGTCCTCCACCGAGCCCGTACCGCAGTTTGCCGAACCCTCTGCACCCAACCCCCGTGGTGGACTGGGACTCCCGGCCGCTGCCTTCTCTCCCTGCATATGACGAGGTGGCTTTAGAGAGTGAGGAGCAGGAGGACGTGGAGGTTAGCTCCATAAACACTGCGAAGACTGACAATCCAGACCAGAATTACGAAAGTGTTGAAGGAGATTTAGATCCCAAGTGCAAAGTGGAAGACAATCTGTTCCTTCCATCCAAACCCGCTGTGGAGAACCGGTCTACTTCGCAGTCGGCTGACATCTTCAAGGAGTTACAGAGGGAGGTCATGGCGAAGTTGCGTGTACCAGCAACGGCACAATCGATGCCCTCGTCACCCCTCTTACCACACCGCCAAATCATCCTGCCATCCTGCGAGGACAAGCCCCAGATCCCACCCAGGATCCCTATCCCGCCAACACGGCCTTCCAGACGGACACGCGCCAGGCTTTCTGCCTCTTTGGGTGATGATGAGGAGAGACCTCAGCCTCCTCAGATTCCTCCGAGAGACCACGCCATGTCCCAGCCCAGCTCGCGATCCCCCAGTCCCATGATCTCCACTCAGCAGAGACCAATTCTGTGCTGTGTTGGTTCTCTAGGATCCTGCCTCTCCCCTTCGTCGTACTCCTACGCTCCATCCACTGCGCCGTCAAAGCTCACGCTCAGCCCCAGTAGAGTCAACTACAATTCCCAGAATGCTACTTCCTCCACCAATGTAGACCAGACTCGAGCCAAGAGCCCCTGCAACCTGCCGGTCATGAGCGACACCACCAAGGCCAGCAGCACTCACTACTACCTGCTTCCTGAGAGGCCGACGCATCTCGACAGATACGACAAGTCTGGGAAAGATTCAGAGCAAAACAAAGAACGACGGACCAACATGGCGACCGTTAGACCCATGGTGCAGCAGCAGATCACCAAGCCCAATCCCACCTCcaaccccagcagcagcagctctccGAGCTCAGCAGCGTTCAACACTTATAGCAGTGTGAAACAGGTACAGGAGGCGGTCCATGGAGTGACGGTAGAGGAGTGTCAGACAGCGCTCCAGAGTCACGGCTGGAACATCCAGAAGGCTATTGAGTACCTCAAGgtGGAGCAGCTGTTCCGTCTGGGTCTGAAGACTCGGCCCGAGTGTGTGGAAGTTCTGCAGAGGTGCAGCTGGAACCTGGAGCATGCGAGCACCCAGATGCTGGATTCATATGGGCCCTCCAGACAAAGATACTAAACCCAGCGTTGAGGATGAACACAGCGCCCCCTTCTGTCCACATGATAATCATCTATGATCCTGCTCGAGACGTCTGTGCATTATTCCTGCGTTCTTTGTTGAGTGTTGCAGGACTCTGAATAGCTCATTACTGCTTCTGTCtggaaaaaaactaaatgttcTGATGTTTAagaatatagtttttttttttttgagaatgtgGAGAATATTTTGTGGTTGTTGCCGTTCAGCTTTGTTTGGAACTTGGTGTTAATTTAGCGCGACGCTTAAACCAGGTACTGGACTAAATCTTTCTATTTAAGACCTTCGTGTGTTATTATTTaagttgtgttttatatttattgatgtATGAAGCAAAGGTGTGAAAGCAGATGACTGTCgctatattatttatatttattcgctttgaaaaatgtgaaatatttacgATATATTCATTctgagtattttatttatttaatgggaTGGATGAAACAGGGACCTCATGATGAATGTCtgaatattattcattaatgcAGTAGTGGAATATTTAGCAGTTTTGCTTTAACACTCCATCATCagcctttaattttatttattttatgtgccATATATAGtgttaaaatacaaacacatgtgattcattctttaatttgttcattcatttctttattcatgGTTATCAAGTTACCAAAGATGTGTAATGTTTGTTGATGGCTGTGGTGTCGGGCTTCAGTTTTTCAGGCCTCATTCATAAACATTTCATGGATTCGACTTAAAAGTTTGcacatgaacaaaaataatcagatttataAAACCATGCATAGGCCAACCATAAGGCGTAAGACCATGTGCACAAGTTCAGTCTTCTCCATAAATAaccataaatgtttattaacatgcccatattatgtacatttattattttatatgcatataaataGGGCCATGGTTCACAGGGAATGCGTTTGTATgtgaatacatttacatttattcatttattcacatttatcaGATGCTTTTATCCCAAACAGCTTACAAAACATGCACCAATAATAAGTTCAAGAAACCGAGGAGTTATACAGAGACACAATGCAATCAGTTACAAAAAGgacaattaaaaatgtaaatacatacataataatacaaatatatttaagatGTAATACAAAAAGCAATTCGTGTAAAGTAAGGGTAGAGAAAGTAAAGGTTTTATTCTGAATACTATCTAAAGAGGAAAGTCTAGGAATAGTTTTGAATAGTTTAATACACTACTGTTAGATATGATGCATGAATGTTGACTCAGGCCCAAATTACAGATCGTTTAGACATTAATAAAGTGATAATTTCACataataaaatcagatttattcTCTAACAAGCCTTTATTGAAGCATGAGTGCAGATAATTACACTGATAACGTTTGGAAAACTGGtgtctttccaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397130 lncRNA upstream 2271 20091823 ~ 20191789 (+) True G335379
TU397129 lncRNA upstream 2426 20091823 ~ 20191634 (+) False G335379
TU397133 lncRNA upstream 4737 20174778 ~ 20189323 (+) True G335381
TU397134 lncRNA upstream 4737 20174989 ~ 20189323 (+) False G335381
TU397127 lncRNA upstream 135238 20058374 ~ 20058822 (+) True G335377
TU397137 lncRNA downstream 254 20207524 ~ 20208617 (+) True G335383
TU397353 lncRNA downstream 53301 20260571 ~ 20260807 (+) True G335558
TU397355 lncRNA downstream 62285 20269555 ~ 20269825 (+) False mynn
TU397361 lncRNA downstream 78811 20286081 ~ 20371855 (+) True G335563
TU397381 lncRNA downstream 93316 20300586 ~ 20300899 (+) True G335582
XM_034297993.1 mRNA upstream 5408 20173100 ~ 20188652 (+) True tfr1b
XM_026938015.2 mRNA upstream 26913 20164767 ~ 20167147 (+) True LOC113541177
XM_026938016.2 mRNA upstream 31024 20160267 ~ 20163036 (+) True ccl20b
XM_026937987.2 mRNA upstream 42011 20116014 ~ 20152049 (+) False map3k15
XM_026938005.2 mRNA downstream 8824 20216094 ~ 20228940 (+) False tmtopsb
XM_026938006.2 mRNA downstream 8824 20216094 ~ 20228734 (+) False tmtopsb
XM_026938007.2 mRNA downstream 8824 20216094 ~ 20225632 (+) True tmtopsb
XM_026938008.2 mRNA downstream 8824 20216094 ~ 20224832 (+) False tmtopsb
XM_026938009.2 mRNA downstream 8824 20216094 ~ 20224580 (+) False tmtopsb
TU397154 other upstream 30954 20160400 ~ 20163106 (+) False ccl20b
TU396960 other upstream 405002 19788583 ~ 19789058 (+) True G335231
TU396585 other upstream 510190 19678481 ~ 19683870 (+) True si:ch73-264p11.1
TU396584 other upstream 510190 19679997 ~ 19683870 (+) False si:ch73-264p11.1
TU396524 other upstream 616987 19576111 ~ 19577073 (+) True G334838
TU397368 other downstream 66850 20274120 ~ 20275691 (+) False lrrc34
XR_003402672.2 other downstream 537479 20744749 ~ 20764373 (+) True vipr2
XR_003402673.2 other downstream 537479 20744749 ~ 20764373 (+) False vipr2

Expression Profile