RNA id: XM_026937996.2


Basic Information

Item Value
RNA id XM_026937996.2
length 4978
RNA type mRNA
GC content 0.51
exon number 3
gene id ptchd1
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19801574 ~ 19815297 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACCTCTCCTCTTCATTATGAACTTCTCAGTCACTTCGCCATCGATGGAGAACCACATCCGCTTCCGCTCGTGCTGAAGACGAGTCTAGCTGTCCGGGATCCACGAGGGCTGAGATCCGAATGAGCGATTATGTAGGTTACAGAGCGGAGATGCCCGgaccaccagcaccaccatcatcatcctcatcctcatcatcctcatcatcaccgcctcctcctcctcctcctcctcctgctcctgctcctcctgctgctgcctGCTGCCTGGTGCCGGTGTGTGTTCACCTTCATCGCGACACAGCGAGCGGATGCTGGAGCTCAGCCTGGCATGATGGAGAAGAGCCTCACACACCTGGAGGACATACGCACCCCGTTTCGGATAAAAAACAAACCTCTTAGCACTTTGCACCTGCGGGGTTTATGAATTCGCTCCCATGTTTAAGAGAGAAACTTAAGAGAAGTCTCCAAGCtcacctctaaaaaaaaaaaaaaaaaaagagaggaaaaatgaTGGCCTGAGGACGGAGGTGTGTGTTTCTCGTTTTGTCCAGGAGGCATCAAAGATGACGCGCAGTTTCCAAGACGCATAAGTTTGATTTCTGTCGCTGTGAGCGCCTGCATGCCGCATAGACGCCGGCTCAGCGTGCTGCTCCctcacgctgtgtgtgtgtgtgtgtgtgtgtgtgtagcaggggTGTGTTACAGCTGCATATTGCGTAACTACAGTCCCAAGACTTTGTCCTCGGTCTTCTCAGCATTTTAGGATCACACTGGTGGATGCTCACGTGCGGGAGAAaggcatacatacacacattaacatcaTATCACTGTTCCATCCAGACTAATAGCTGGGACGTCATTCATTGCAGAGACCCTGGTGTCAAACCGAACATTGATGCTCGGGACCcccaatgatgatgatgatgatgatgatgatggtgcgCTCGCAGAGGCCCGCCGCCCGCACGCCTTCTCCGCTCACACTCTAGGATGTTGCGGCAAGCGGTGCGCGAGGGGCTGCGGGCGTCCTTCCACAAGCTGGGCCACTTCGTCGCCAACCACCCGGTGTTCTTCGCCTCGGCGCCCGTGCTCCTCTCAGTGCTGCTCGGCGCCAGTTTCAGCAGGTACCgagtggaggaggaagtggagCGCCTGCTAGCCCCCAAACACAGCCTGGCGAAGATCGAGGGCAACCTGGTGGACAGCCTGTTCCCCGTCAACCGCTCCAAACACACTCTCTACTCTGACCTGCAGACACCGGGCCGGTACGGGCGCGTGATCGTGACCTCGCGCAAGGGGAGCGTGCTCGAGCCTCACCACGCTGACCTTGTCCTGAAGGTTCCGATGCTGGGCTTCAACTACACCTTCGCTCACCTCTGCCTGCTGGACGATAGCAAGAACTGCATCATAGACGACATCCTGCGAGTGCTGGAGGAGATGCGAACAGCCCGTGCCTCGAACCGGACCGTGCCGCCGCTGCGTTACCCCATCACGCGACTCAAGGACGGGCGAGAGGCCTACATCGGACACCAGCTTGGCGGGGTGCAGACAGTGGGAGGCGGTCGAGAAGGCGTCCGCGCCGCCCGCGCTCTCCAGCTCACCTACTACCTGCAGGTCGCCAGTGCGCTGAACGAGGTGGTGGCGGCTCGCTGGGAGCTGCTGTTCTGCCGTGAGCTGGAGCGCTTCAGCGCAGCACACCCCGAGCTGGGGCTCTACCCGTTCACCTCGTCCTCGCTGCAGAGGGACTTTCAGAGGACGAGTCGTGTGTCGGAACGCCCGCTGCTCTTCAGCCTGGCCGCATGCCTCTCACTCGCTGTGCTTTGCTCTTCTATGAGAGACTGCGTACGCACCAAACCCTGGCTGGGAATCCTGGCGTTGGTCACCGTCAGCCTCGCGACTCTCACCTCCGCCGGGATCTTTAACCTCACCGGAGGGAAATACAACTCCACGTACCTTGGCATTCCTTTCATCATGCTGGGTCATGGCTTGTTTGGCACGTTCGAGATGCTCTCTTCGTGGCGACGGACGCGTGAGGACCAGCATGTAAAAGAGCGAGTGGCTGCTGTGTTCTCAGACTGCATGCTTCCCTTCACAGCCAGCACCGCCCTTCACCTGGTCACCTTTGGCATCGGCGCCAGCCCGTTCACGAACATCGAGGCCGTGCGCCTGTTCTGCCGCATTGCCTGCATTTCCATCCTCTTCAACTACCTCTACATCCTCACCTTCTATGGGTCCAACCTGGTTTTTGCAGGTTACCTCGAAAACAACTATCGCCACAGCCTGTTCTGCAGGCGCGTACCCAAGCCTGATTTACTGCAACAAAAGCCAGCTTGGTATCGCTTCCTGATGTACACGCATTACAACGAGGAAGCGTCTGAACCCGGTGACCTACATGTCTATGAGAACCATCTCCTGGTGGCCTTCATGAAGCGTTACTATTGCGACTGGATCACCAACACTTACGTCAAACCCTTTGTagtgcttttttatttagtatacaTCTCCTTTGCATTGATGGGCTACTTACAAGTGAGTGAAGGCTCAGATCTCAGTAATGTTGTTGCCACAGAGACCAGCACCATCGCCTACACCCGGGCACAACAGCGCTACTTTAGCAGCTACAGCCCTGTAATTGGCTTCTACATCTATGAATCTATCGAGTACTGGAACACCAGTGTTCAGGAGGATCTGCTCGAGTACACGAAAGGGTTCGAGCGGATCTCCTGGTTTGAGAGTTACCTGAACTACCTGCATGGTCTGAACATCACGACCAGCCTTTCGCGCAGAAACTTCACCGAGCACCTGCGCTCAGGTTTCCTCCGCCAGCCCCGCTACCTCCATTTTTCAGACGACATCATATTCGCCAAGCGGGCTGACGGAGAGTTTGATGTAGTGGCTTCCCGGATGTTCCTGGTGGCGAAGACGACAGAAAACAAGCGAGAAGAGATGTCTATTTTGTTAGATACGCTGCGCAAGCTCTCGCTGACCTCCAGGGTGAAGTTCATCATCTTCAACCCTTCTTTTGTGTACATGGACCGCTACGCATCGTCAGTGGGTGCACCACTGAAGAACTCGTGTATTGCTGCTCTGTTCTTGCTCTTCTTTTCTAGCTTTTTGGCTGCTGACCCTTTGGTGAACGCCTGGATAACTGTGACGGTGGCCTCTGTGGAATTCGGTGTGGTGGGATTTATGACTCTGTGGCAAGTGGAGTTAGactgtgtgtcagtgctgtgccTGATTTATGGGGTTAACTACGCCGTGGACTCGAGTGTGCCTCTAGTGTCAGCCTTCGCTCTGGGACGGGATTCGACGCGTACGCGATGGGTGAAGGTGTCCCTGGAGCGGCACGGGGTCCCTGCCTTGCAGAGTTACATGTGCTATGGTGCGGCGTTGTTGCCTTTAGCAGCTGTTCCGTCCAACCTTACTCACACGCTATTCAGGTGTTTTTTCCTCACTGCCCTCATCACCGCCTTCCACTGCCTGGCTATCCTTCCAGTCCTTCTGACATTCTTACCTCCCTCCAAGAAAAAGAGGAGGGAAAGGAAGAACGTGGCAGAGCATCGGGAAGAGATTGAATGCGTTGAGATGGCAGACAGTACCCGAGTGGTTGATCAGATTACCACCGTCTGAGCAAAATAAGGAAATGTGAAATCTGACCAAGAGTAACGGCAGAGCTTGGGCTCACAGGGTCCATCAAGACCTGGAAGGAACTGTCACGTCACCGAGGCAGATATAATCTGAGCAAAAGAATCTGAGCAAAAGAATTTAAGCTCTCTTGTTGGAACTAGGCTTTGTTGTCATGGTAAAAAGTGCTGGAAAGGTCTCGCCATTAACACGAGGCTAGGTTGTCATGGTGAAAGCCCTGCGAAGGTTGTGCTGCACATCTTCCAACCCTGTGTGGATGGTGAGAGAAAGTCTTTGTTCAGTGAGCTGAATGAGCCAAATTTTTTGGCCAGCTGCAGATAATTACAGAGCAGCTCCTAGACTAGCGCTGAATGCTCTCAACAGGGTTTCGCCTTAATGCAGTTCAGACGCACATACATGCTATACAAACCATTTCAACATTActgtgatattaaaatataaaaatattaaatattaaccgCACTACCCATATTTACAGGTGGTCAGGGGGTCCTAATTGCTAAATCAAGGCAGCCatagttgttttttaaatagccATGTCCTTTATTAGCCATATAAATTCAAACTCTGGCTaatttgtcatttcaagacttcATTGCCGCCCTtgaattttttctttctgtatcaGACAGAATAACAGTTGATCTCAGTTGGAGAGAAATGCAGATGCTCGCTCGCAGGTCATGGTGCACTGCATCGCTTCCATGGTAACCCCTCGTATCTGTCACAatttagtcttagattatacTCTAAATACATCATTTCATTCCCCTCGTGTATTCAGTCGGTTCTTAATAGTTCCTAATGGGAATCGATGGCTGATTAAGTTATGCAGCAGTGCAGGTTGTGAAAAACCTATGAAGGATTTCATCCCAGAGTTCCTGgagtgcatttttttctcagaaaaaaacattgaaaatcacactgtcacacacaacGCTTCTCATCAATATGTATGAGCCAGAATCACTCTTTGTGTGTCCTTGCTTATTCGGTATGAGAGACACAAAGGAGGGAGAAGATaagggcagagagagaaagagaaacacacacacagaacgaGAATGGAGATAAAggtagaaagagaaagagagagagaaacagagaaagagagctagTTTTTTGTCTGTTATAatgaaatcacaggtttatattaatgcgctcattctaatatgttatggtttctatactaacagctcattcacagggactcgtacggtGGACGTTCAACATAAACGGATgtttttctgtgagatgttttttaacatttatggaaggagtctccagtgtcagcgctttgtaacagtcagaggtaaagctgtaacttaaagtt

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0008158 hedgehog receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396961 lncRNA downstream 12516 19788583 ~ 19789058 (-) True G335232
TU396959 lncRNA downstream 28517 19772853 ~ 19773057 (-) True G335230
TU396860 lncRNA downstream 237112 19560978 ~ 19564462 (-) True G335150
TU396859 lncRNA downstream 250044 19551040 ~ 19551530 (-) True G335149
TU396813 lncRNA downstream 283265 19507088 ~ 19518309 (-) False pdk3a
TU397159 lncRNA upstream 64595 19879892 ~ 19902336 (-) True G335404
TU397160 lncRNA upstream 73783 19889080 ~ 19892463 (-) False cnksr2a
TU397218 lncRNA upstream 244727 20060024 ~ 20061159 (-) True G335460
TU397267 lncRNA upstream 306219 20121516 ~ 20194381 (-) False G335498
TU397272 lncRNA upstream 322878 20138175 ~ 20191786 (-) False G335498
XM_034297843.1 mRNA downstream 6507 19750582 ~ 19795067 (-) True adgrg2a
XM_034297858.1 mRNA downstream 65889 19723836 ~ 19735685 (-) True hhla2b.1
XM_034297803.1 mRNA downstream 85235 19711629 ~ 19716339 (-) False LOC113541040
XM_034297802.1 mRNA downstream 85235 19711629 ~ 19716339 (-) True LOC113541040
XM_034297804.1 mRNA downstream 91258 19704541 ~ 19710316 (-) False hhla2b.2
XM_034297815.1 mRNA upstream 16713 19832010 ~ 19848495 (-) False phex
XM_034297814.1 mRNA upstream 16713 19832010 ~ 19848284 (-) True phex
XM_026938004.2 mRNA upstream 43924 19859221 ~ 19866815 (-) True mbtps2
XM_034298256.1 mRNA upstream 73742 19889039 ~ 19967804 (-) True cnksr2a
XM_026938001.2 mRNA upstream 157445 19972742 ~ 19983716 (-) True chrnd
TU396884 other downstream 197881 19600727 ~ 19603693 (-) True G335165
TU396861 other downstream 222654 19576108 ~ 19578920 (-) False nup58
TU395862 other downstream 1281369 18444658 ~ 18520205 (-) False mybl1
TU395863 other downstream 1358579 18442355 ~ 18442995 (-) False mybl1
trnay-gua_4 other downstream 1421840 18379649 ~ 18379734 (-) True trnay-gua_4
TU397303 other upstream 364115 20179412 ~ 20182412 (-) True G335523
TU397559 other upstream 427223 20242520 ~ 20246278 (-) False cops9
TU397560 other upstream 431269 20246566 ~ 20248461 (-) False otos
TU397621 other upstream 715325 20530622 ~ 20557948 (-) False fndc3bb
TU397639 other upstream 794935 20610232 ~ 20612309 (-) True G335788

Expression Profile