RNA id: XM_034298100.1


Basic Information

Item Value
RNA id XM_034298100.1
length 4531
RNA type mRNA
GC content 0.44
exon number 7
gene id klhl24b
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20026736 ~ 20047169 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAGTCTCCGCCCACGTCTCAAATAACACGGAGGAAAAATACGCTGGTGCAAGTCCAAGTAGCTGAGGCGGTTTTTCTCATGACGTTTGCCTCTAGTGCccaaggctgtgtcccaaactgcGTCGTATCTTATTAAACAAAGCGTCAAAACACTTACCTAGTACAGCAGACCCAGTTCCTCTTCCTGTTCTCCTGTCACTGGGCCTCAGGCCTGATCCAATCTGTCTGCCATGGTACTGATCCTGGGAAGACGGCTAAACCGGGAGGATTCGGGTGTCCGCGAGTCTCCTGCCGTCAAGCGCAAGGTTCTGGAGATGGACACAAAGACTCTGAGCAGTCATGACGTGTTCGACTTCTCCTCAGGCCCGAGCCATGCTGAGAGCATCCTCCAGATGTTCAACGAGTTCCGTGATGGCAGGCTCTTCACCGACGTGGTGATCAGCGTGGAGGGTCGTGAGTTCCCGTGTCACCGCGCCGTGCTGTCGGCGTGCAGCAGCTACTTCCGCGCCATGTTCTGTAACGACCACCGCGAGAGCCGCGCCATGCTGGTGGAGATCAACGGCATCCGCGCAGACGCCATGGACACCTTCCTGCAGTACGTGTACACGGGCCGGGCGCGCATCACCACCGACAACGTGCAGTTCCTATTCGAGACGTCCAGCTTGTTCCAGATCGGGACGCTGCGTGACGCCTGCGCCAAGTTCCTCGAGGACCAGCTGGACCCGTGTAACTGCCTGGGCATCCAGAGATTCGCCGACGCCCACTCGCTCAAGCAGCTCGCTAACCGGTGCCGTAACTACGCCCTGCAGAGCTTCGCCGATGTGGCGCAGCACGAAGAGTTCCTGGACCTGCGCCGTGACGAGCTCGAGGAGTACATCTCCAGCGACGAGCTGGTCATTGGTAAGGAGGAGACGGTGTTCGAGGCCGTCATGCGCTGGGTCTACCACGACATCGAGCACCGGCGTGCCGTCCTGCGTGACCTCCTGACGCACGTCCGCCTGCCGTTGCTGCACCCAAACTACTTTGTGCAGACCGTCGAAGGCGATCAGCTCATCCAGAACGCACCAGAGTGCTACCAGCTGCTGCACGAGGCACGGCGATACCACGTCCTGGGCAATGAGATGATGTCACCTCGGACACGCCCACGCAGGTCCACGGGTTTCTCAGAGGTCATCGTGGTGGTGGGCGGCTGCGAGCGAGTCGGAGGCTTCAACCTGCCGTACACCGAGTGCTACGACCCCGTCACAGGAGAGTGGAAGTCACTGGCCAAACTTCCCGAGTTCACCAAGTCCGAGTACGCAGTGTGTGCTCTCCGCAACGACATCCTGGtctcagGAGGTCGCATCAACAGCAGAGATGTGTGGATGTACAACTCACAGCTCAACATCTGGATCCGAGTGGCGTCGCTGAATAAAGGACGCTGGAGACACAAAATGGCCGTCTTACTGGGAAAGgtgtatgCAGTGGGCGGTTACGACGGTCAGTCGCGCCTCAGCAGCGTCGAGTGTTACGACTCTTTCTCCAACCGCTGGACGGAGGTAGCCCCCATGAAGGAGGCCGTGAGCTCCCCGGCGGTTGCCGGCTGCGTCAACAAGCTCTTCGTCATCGGAGGAGGCCCTGACGACAACACGTGCTCTGATAAGGTCCAGTGCTACGACCCGGAGTCAGACTGCTGGTTGCTAAGGGCCAACATCCCCATCGCTAAGCGCTGCATCACCGCCGTGTCCCTCAACAACCTCATCTACGTGTCAGGTGGCTTGACTAAATCCATCTACTGCTACGACCCCATTGAGGACTACTGGATGCACGTCGTGCATACCTTCAGCAAACAGgagagcTGTGGGATGTCAGTGTGTAATGGGAAGATCTACATCCTGGGCGGTCGCAGCGAGAGCGGCGAGGCGTCGGACACCATCCTGTGCTACGATCCGGCCACAGGGATCATCACAGGTGTAGCGGCGATGCCACGCCCCATCTCCTACCACGGCTGCGTGACCATCCACCGCTATAACGAGAAGTTCTACCACTCATGACCCCCTTAGCTCtttcctcctcacacacacactgagccgAGGATCAGGTGTCGGTGtggtgtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctagttaAAGCCATTACTGCACAGtgtacagactgtgtgtgtgtgtgtgtgtgagagatccAGTGTATGATAGTTTTAGTATTTACACTGTAAACTTGTAATCTTGTAAAAATGCGGTAAAAGCTGCTCACAGGAAACTAATAACAGTTTTATTGACTATAATTCTGTAAATGCAGTTACAGTAAAATCCTCCTTTTAAGAATCAAACACagcaattaatattttaattgaataattatttaattctatTTCATTCCCAGCTGGAAAAACAGCAATATTggaaaatatcattaaatatattttttaaatagtacaTTTCTGTGTTCAAGGCACGCAAGTAACACAGTAaatggacattttattttattttattttattttactgttattactaaataaatattttattatttttattttattatttatttctgtttcctaATACGGTTATTAGTTTTCTCCTGGCATCTtttaccacatttttttttttttttttcccttctccaACACATTACAGCTGGCAGGTCCCTCCATTTGCcctgtgacctttgaccctttgtattattattattattattattattattttttaactagGGTTCTCCACtggtagccttttttttttgctttaattattaCGTTACTCTTCTTATGTTATCgtcattgttgttattttattcaggtgtgtgtgttcgatGGTGTGTGCGGTGTGTGGAGATCTTTTGGCCGTCATATTGGACCgttttatgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtttgatgATATTTACTCGACTCGACACTGTGCTCCGCGTGTTTTCAGGAAATAATTTAAGAACTTTAAAGTTATGGTGAATTTATTTGTACGCAGTCGTGGACTCGTCTTTGTGTTTATTCCTGATCATTATCTAACCATTATctatctttttcttcttttttttctcccttttttatattattcttgTCAggtgaaaatctttttttttttcaaatatctAATATGATTTTCAGGGCCTCTTTTATTcgtaattattttcttttcttttatctaAGCCCTAAAATGACACATTTAGTCTctgaaatctgtattttttttgttgtaaatataaattaaatccttttttttttttttactgtatcaGTAATTTTTATAATGATACCAACAATTTCTTACtgtaattaaaaggaaaaaaaaattcttgaaaGATGTAGCAGCCACAAATTCAacgtgagtgtgtttgtgtgttcgaGTTTTATGGAAATTTGAGATCTTTAAattgaaagtttttttcttccagaaaAGTTTTTCACTGCTCCCTGTACGGTCGCAGTTTTtatagttgagtgcaaaagtttgcacaccctgaggaccaaaaaaaaaaagaaagaaagaaaataagaattaaatgtatttttagttttcCTTAGTCATCACAAAATGGTGAAattgtgtgtattaatattttaatagtgaAAAAATTCTAAATGATATCAGTTAGAAAGTTTGTGAATATTCTCGAATAACTTTAATATCAACTTTTTTCCttcgtaatttttttttcatttaatttctggCTCATGTTTTGTCTTGTTGCCTTGGAGACAGGATAAACCAATGTTTTATACTTAATGTCTTGGGATTATTTGCAGATTATTTGTAAAACAGAAAatcttcctgttttcactttaaATGAACAAGCAAaactatatattattttttaacaaatagggatgcaaacttttgcactggacTGTGTATTAACTCTCATAAACGAATGTATGCGACATTAAATCACATGTTTGAATCAGTCAGCTGGTTAAAACCTGAAATTGAAAAGATCCAGGACACATTTGGCTGTGATGATTTTAGTTCTTTTATTATGTGAGGTTATAGAGCTGATTGTGGGTTTcgttttagtttttatttggaTGGATTTTTGGAGAAAACAGTCAGTGATGTTCGAGTGTTAATGTAACCGTCACACTGTGGggttttaaacattaaaagtgcCGTAattaataatctgtttattctgtATGTTCACTGGCCATGATGAAACAACATGTAATAAGAGGAATCCTCGACTCGACTcatgcagtgcattgtgggaatttTGCCTTGTTGCTCTTTTCATCCTGATGTGGTGaacatgagagacagagagtgttaGTGAGTATTAATGAGTATTAGTGAGTATTAGTGAGTGTTTGCGAGTGTTTCGAGTGTTTGAGAGTGTTTGAGAGTGTTTATTTTATGGCTTCCTATCTGTGTAAATGCATCACTcacttgttttctttatttcttgaGTGATTGACGTGTGTACGGTGAAAATGTACTGAACCTGCTTTAATAAAGTGCGTTTTCTTGTGGGTTTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397159 lncRNA downstream 124400 19879892 ~ 19902336 (-) True G335404
TU397160 lncRNA downstream 134273 19889080 ~ 19892463 (-) False cnksr2a
TU396961 lncRNA downstream 237678 19788583 ~ 19789058 (-) True G335232
TU396959 lncRNA downstream 253679 19772853 ~ 19773057 (-) True G335230
TU396860 lncRNA downstream 462274 19560978 ~ 19564462 (-) True G335150
TU397218 lncRNA upstream 14238 20060024 ~ 20061159 (-) True G335460
TU397267 lncRNA upstream 75730 20121516 ~ 20194381 (-) False G335498
TU397272 lncRNA upstream 92389 20138175 ~ 20191786 (-) False G335498
TU397270 lncRNA upstream 113336 20159122 ~ 20191786 (-) True G335498
XR_003404154.2 lncRNA upstream 121531 20167317 ~ 20172924 (-) True LOC113541188
XM_026938002.2 mRNA downstream 39688 19972882 ~ 19987048 (-) False chrnd
XM_026938001.2 mRNA downstream 43020 19972742 ~ 19983716 (-) True chrnd
XM_034298256.1 mRNA downstream 58932 19889039 ~ 19967804 (-) True cnksr2a
XM_026938004.2 mRNA downstream 159921 19859221 ~ 19866815 (-) True mbtps2
XM_034297814.1 mRNA downstream 178452 19832010 ~ 19848284 (-) True phex
XM_026938000.2 mRNA upstream 189000 20234786 ~ 20240380 (-) True and1
XM_026938022.2 mRNA upstream 196702 20242488 ~ 20246311 (-) True cops9
XM_026938017.2 mRNA upstream 200665 20246451 ~ 20248460 (-) True otos
XM_034298193.1 mRNA upstream 203671 20249457 ~ 20252001 (-) True apodb
XM_034297872.1 mRNA upstream 235825 20281611 ~ 20293054 (-) True lrrc31
TU396884 other downstream 423043 19600727 ~ 19603693 (-) True G335165
TU396861 other downstream 447816 19576108 ~ 19578920 (-) False nup58
TU395862 other downstream 1506531 18444658 ~ 18520205 (-) False mybl1
TU395863 other downstream 1583741 18442355 ~ 18442995 (-) False mybl1
trnay-gua_4 other downstream 1647002 18379649 ~ 18379734 (-) True trnay-gua_4
TU397303 other upstream 133626 20179412 ~ 20182412 (-) True G335523
TU397559 other upstream 196734 20242520 ~ 20246278 (-) False cops9
TU397560 other upstream 200780 20246566 ~ 20248461 (-) False otos
TU397621 other upstream 484836 20530622 ~ 20557948 (-) False fndc3bb
TU397639 other upstream 564446 20610232 ~ 20612309 (-) True G335788

Expression Profile