RNA id: XM_026938000.2


Basic Information

Item Value
RNA id XM_026938000.2
length 2525
RNA type mRNA
GC content 0.49
exon number 6
gene id and1
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20234786 ~ 20240380 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttatcaaGGTGGAGTTTAAAACGTGTCTGAACCCTCACCAGGGGCACAAACAGCACCGGAGCCTCTGCAGAACCGCTGCAGAACCGCTGCAGAACCGCAGAGCCAGGTCTTCAGCTACAGCCTCTGTCCAGAGGCCCAAATTCTTCCACACCTATCGCAGGAGTCAATAGCTGAAAAATGGCCGGTCTGAGAAGATCATCCTTCTCTCACATGTTCACAGGATTTCTTCTGACTACAGGGATATTCGCAGAGTTCCTCCTGGCTGTCCCACTCACCCAGCCCTCCACCGAACACGGTTCGGAGAAGATCGATGCCGAGCTCTCTGCCAAGAGACTCATCCGCAACCGGAGGAACATCAGCTGGTACAAACAACACTCTGACTTCTGGAACTGGTACAAGTTTTTCACCGACTCGGGCAACCAGCAGGGAGTTGCAGACCTGGACCGTGTGTATCTGGCCTATCTGCAGAACAAGAACCGTGCCGAAGCCCAGCGCTCCCACAAGCTCTATCTGCAGCATCTGGGTGAAATCTACAAGTCATGTGCTGAGTCTGATGACCCAAACTGCATGGCCTCATACCTCAGCAGGCCCAAGGCCAAGGCTGAGCCACAGAGACCGGCACTGGTTAAGTCCTGTGATCCATTCCGGGATCCACAATGTCTCTATGCTCTGGGATACACCGCTTATCCGTATGTGGCCTCTGCAAAGTCGCCAGCTCcggctcctcctcctgctcctgctccggTTAAAACTCCGGCCTACATCCGAACCCCTGTGGTGAAGGACCCAAGTTCTGGTCAGTACTATTATGCTCCTGCAGCACAGTCCTTCCTGACTGCTGAGCAGAAAGCTGAGCTGTTGCGTATTTGTGGTGCTGAAGATGTCGAGTGCCTGCAGTACCACTTCCGTGGTGCTTATGGCTACAAACCTGCCGGCGTCCCAGCGCCATCCTACGCCCATCTAGGCTCCTCCTCACAGAAGGTGCAGAAAGCCCCAGCTGGCTTGTACCTTCGCTATCCCAACTGCGATCCCCGCGTCGACCCGTATTGTGCCTACGCTGCTGTAGCGGCTTCTCAGAAATCAGAGGCACCATCTTCTCCAGCTGCTCTTGAGAGGTTCTGCAACCCGCTCTACGAAGACAACTGCAACCCGCTGACGGCTACCAGCTTTGACAGCGTAGCAGCTCCATCAGAAGATCCCAAAGATGATCCAGCTTCTGCCCAGGAGCTGCAAAACCCCCATTACGATCCCTTTGCCATGTTCCaggatgctgctgctgcagcaGCTTCTTCTGCCATGCGCAGGCTTCCATCTGGTCACGCCAAATTCCCACAACACCCTCAGCCGCCCACTATGGTGGAGAGCTCCCAATCATTTGGACCTCCTGGGAAGACCAAGGAGGGCTATGATTGCTTTATTGGCTATGATGCAGAGTGCTACCCAATTGGAACCCAGAACGTTCCCAGTAGAGTCCCACAAAGGCAGGTTCCTCATTCAATGGACACCTACGAGCCCCACCTTAACGCAGACGGCACCAGAAAGGGCGTGATTGAACCTGATCCTCACTGCGACCCCGAGTATGACAGAAATTGCCGTCTGCGCCGCTACGAGCCTGAGGCTGAGGAACCAGAGACGCACACGTCCCACAATGAGGAGCGTGAGTATCAGGAACACAGGGAGGAACCTGTTCGCCATGAGGATCAGAGAGAGGAGGTCTACCCTGAGCAGCAGCCAGACATGAACAACCAGGGCTACGAGCAGCAGCAGTACGACCGCTACATGAGCGGCCAGGAGGATCCCTACGCCTCTTATGATCAGCCAAGTCAAGGTCCTATCAACTTCCAGGACATCCTGAAGGCGTACGCAAGCCGCTTCCCAAACCAGGAACACCATCGTACCTACACGGGAGACTACAAGAAGAAATAAGAAGCTGGAAAAAGCAGCATAACGAATAATGATTAGGGAAATGGGACAGTGTGTGGATTGTGAAAGATGTTCACagattaaaatattcatatctgatgtaaaaaaattacagttacGGAGAAGCAGATCTTCAGCTCGAATGGTGAAAGGCGCAGTAGTGTGACAGCACTTGTATAGGATTTCGTTTCTTTAGCTTACGAAtctattttattgctttaacCTGGTCTCATGTTAATTATCAGTTTAACTGATTTAGATGGTTTAGAGAAGATTCCTGGTGTAACTTCTTGACTAATGGATCATCTGAAATCTTTTGATATCacttcatatataaataaaatatgttgagTATTAAATTTTCAAGAGGTGGTAGAATGCGAAAAAGTATCTGAATATACAGCAACCATTTTTATTtggtcttttttctttttttcccttttttccttgAAAAATGGATGATGTCTACCTAGAggaatatttaatatcttttccaaaatggtgctttttctctcatttaatgttttttaatgtgtttatatgaaAACATTTCTCTTTGAATGTCTTGAATAAAAcgcttttaaataaaatcttaaattgTT

Function

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0033333 fin development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397267 lncRNA downstream 40405 20121516 ~ 20194381 (-) False G335498
TU397272 lncRNA downstream 43000 20138175 ~ 20191786 (-) False G335498
TU397270 lncRNA downstream 43000 20159122 ~ 20191786 (-) True G335498
XR_003404154.2 lncRNA downstream 61862 20167317 ~ 20172924 (-) True LOC113541188
TU397218 lncRNA downstream 173627 20060024 ~ 20061159 (-) True G335460
TU397629 lncRNA upstream 319793 20560173 ~ 20564445 (-) False stag1b
TU397652 lncRNA upstream 420248 20660628 ~ 20661829 (-) True G335800
TU397687 lncRNA upstream 504179 20744559 ~ 20745016 (-) True G335831
TU397718 lncRNA upstream 682527 20922907 ~ 21002111 (-) True G335859
TU397730 lncRNA upstream 776566 21016946 ~ 21018572 (-) True G335868
XM_026937998.2 mRNA downstream 187617 20026736 ~ 20047169 (-) False klhl24b
XM_026937997.2 mRNA downstream 187617 20026736 ~ 20047169 (-) True klhl24b
XM_034298101.1 mRNA downstream 189000 20026736 ~ 20045786 (-) False klhl24b
XM_034298100.1 mRNA downstream 189000 20026736 ~ 20045786 (-) False klhl24b
XM_034298102.1 mRNA downstream 189231 20026736 ~ 20045555 (-) False klhl24b
XM_026938022.2 mRNA upstream 2108 20242488 ~ 20246311 (-) True cops9
XM_026938017.2 mRNA upstream 6071 20246451 ~ 20248460 (-) True otos
XM_034298193.1 mRNA upstream 9077 20249457 ~ 20252001 (-) True apodb
XM_034297872.1 mRNA upstream 41231 20281611 ~ 20293054 (-) True lrrc31
XM_034297873.1 mRNA upstream 41231 20281611 ~ 20293053 (-) False lrrc31
TU397303 other downstream 52374 20179412 ~ 20182412 (-) True G335523
TU396884 other downstream 631093 19600727 ~ 19603693 (-) True G335165
TU396861 other downstream 655866 19576108 ~ 19578920 (-) False nup58
TU395862 other downstream 1714581 18444658 ~ 18520205 (-) False mybl1
TU395863 other downstream 1791791 18442355 ~ 18442995 (-) False mybl1
TU397559 other upstream 2140 20242520 ~ 20246278 (-) False cops9
TU397560 other upstream 6186 20246566 ~ 20248461 (-) False otos
TU397621 other upstream 290242 20530622 ~ 20557948 (-) False fndc3bb
TU397639 other upstream 369852 20610232 ~ 20612309 (-) True G335788

Expression Profile