RNA id: XM_026938032.2


Basic Information

Item Value
RNA id XM_026938032.2
length 2492
RNA type mRNA
GC content 0.53
exon number 17
gene id spice1
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17621946 ~ 17629485 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGCTTTCTGTGTTTCGTGCGTAGCGCATTAGGTAGCTTTATAGCTAATCTGAGTAAACAGTAAGAAGCTCTTTAgcacagttagctagctgacaGGCTCGCGCTTCTGACTACCTTCCTTAGATTGGTCGCTAAAATAAcgcttttaaatcattttacttTCGGTTTTTCAGGACTACGTTAATGTTTCTGTATGAAAATATGTTTCTGTTATCTGTTATGTTGTTGTACAGCGTTATTAAGGTAATAGTGATGACTTTTATGTTGTAAAGGGATGTCGTTTGTGCGGATTAACAGAAGACCAGCGCGAGCGAAGAAAGTGTCAGTTCCCAGGAAAGAGTGGGTGAGCACAGTTAATGACCTGTCAGTGCACAGAGCTACAGCTGAGGAACTGtccagGCGCCATGACCAGCACCGATCTCACAACAGAGCTGCTGCACAGTGGGAGCTGAGGGAGAAAGCGCTGAAGAAGAGAAAGCCCCGGCAGGCCAGCCCTCCTGGACTAGACCAGAGCAGACTGCGATTATTcagagaggtgTTCTCGGATCACTGTGAGCTGCAGGACGTTCTCGCGCGGTCTGACAGAGCACTGGCGGTGGTGAGGGATCTGTTCGGCGACGCACCTCGCAGACAGAAAGGTTTTCCGAGCGTAACCATGGCGCCTGACTGCGAGTCGGATTCTGAACTTCCTGTGCTGCAGAAACCGGATCCACCAACACAGCTGTCACTGCTCAGCCAATCAGTAATGGACCAACAGGCTTTAAATGAAGTGGATGATTCTGCAGCAGAGCATGGGGAAGATCTTCAGGATGTCTCGGTCAGCTTCAGCAGTGAAATGTGCAGGCCGAAGAGAAAAACGTGTAAAGCAAAGCCTCCTGTTTGGAGAACAACTCAGCAACCACAGCAGCAGAACGTTCCTCAGACTCCCTGTAACGCAACAAGCTCAGAGGACCATGCGGCTCTGAACGCAACCCTGGCTGTGCAGCGTCTAAAGTCGAGGCAGTCTCAGTCAGAGGCAGACCAGTCCACCACTCTCGTCACTCAGGTCCTCAATCCTGAACCGTCTCCCTCTCGTTCTGGTGGTAAGAGCAGGTCGTTCAGAACCACCAGAGGGCGCTCTCCTGAAGCCTCAGGCTTTAGCTCTCAGAGTGCTAACCAGTCGAGCCTGGAGCTGCTGCAGGACATGCTGGCTCAGGTGGAGACTGAACTGGCCTGCTTGGAGCCGCAGGAGCTTTTTGGACCCTCGGAGCAACCCGAGCTTCAGCATGGCCGTGGCCTTACTGGCTTCTCTGTGGCTCTTGTTGGTACTTTAGGACGCATCGTTGGTCATCTGAGACGAAGGGACGAGGAGATGCAAAAGGAGGCACATGTGAGGAAGAGGATGGAAGAGGAGATGAAGGAGCAGAGAAGCCTGATTGATGCCCTCACAGCGGAGTGTCTCACACTGAGAGAGGAAAGCGCCGCCCTACAGGCGAATGTGCAGGAGCGGATAGCTGAACTCGAACAGCGGCTGGACATGGTGATCCTTACAATGGGAGAGCTGGGAAAAGACGGAGACACACAGGGCGAAGAGGAAAACACACCAAGTGGAAGCCTCCAGCCTGTAACTGCTGAGAGAGACCAAGAGGAGCCAGCCCCGATCTCTCCTGCTGTGCTGCTCTCTCCTCCACaccagagagacagcagagcgCCGCCTACAGCACGCGCCCGATCTTTGCACTTCGAGGGCTCTCACACTTCAAGCAGTGGGTCACCAGGAGAGTCGGACATCTCGTGCACTCCGTCCTCATTCGCTAGCCTGCCCGAGAGCGTCCTGCCTCGTCCTGCCCCGCTGCTGAACCAGCTATCCCAGGATGCCATGCTGGAGCAGATAGCGGAGTTAACCCGTCAGAACGCAGTGATCCGGGCTCAGCTAGGGCACAACCATGCCTCTCCTACACAATGCTCAGACGGACGTGCATCGCCCCCTGCTGGACCCACACAACAGtgtgtgggtgtggaggATTCCTCAGTGAGGCTTATGGAGGACAGACTTCAGGAGCTGAACAGACAGAGTGCAGCAGCCAGGGCGAAACTGCTGGAGCTTATCGAGCAGCAGAGACAGACCACATCTCACAGTgcctctccctccatctccccCATACCCCCACACTCCACCAGTCctcacacagTTATTGGAAGGCGGACTCCTGAAGTGTGCGTGTCTGTACCTGAAAGAGCCCAGCCCTCTCACGCCAGGACAAACGGCAGAAGGTCAGCTGAAGCAGTTTCTCCACAAAATGTAGAGGGAAGACAAAAGCAGTCTGTTaatacacagGTGGATAAACTGAAAGGAGAAGGCTGGTTTGCGCTGTCAGCTCACGTCCGATAGCTTGACTGACTGGAGGACTGGAGGGACgctacagttacacactacctgcattctttcattcttgtCTCCCTGGctgttttagtttttaattttgcacatGTCAATAAATTTTAgacaaaca

Function

GO: NA

KEGG:

id description
K16490 SPICE1; spindle and centriole-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395113 lncRNA upstream 80342 17540637 ~ 17541761 (+) False rnf6
TU395063 lncRNA upstream 175060 17446185 ~ 17447043 (+) True G333582
TU395018 lncRNA upstream 259028 17362871 ~ 17363075 (+) True G333548
TU394762 lncRNA upstream 435428 17186129 ~ 17186675 (+) True G333360
TU394629 lncRNA upstream 724248 16893006 ~ 16897855 (+) True G333244
TU395303 lncRNA downstream 38151 17667636 ~ 17667844 (+) True G333787
TU395307 lncRNA downstream 40931 17670416 ~ 17670625 (+) True G333791
TU395294 lncRNA downstream 78237 17707722 ~ 17712380 (+) True G333779
TU395313 lncRNA downstream 111916 17741401 ~ 17745040 (+) False G333795
TU395312 lncRNA downstream 113793 17743278 ~ 17756282 (+) True G333795
XM_034298181.1 mRNA upstream 16910 17543823 ~ 17605193 (+) True atp8a2
XM_034298053.1 mRNA downstream 6898 17636383 ~ 17653613 (+) False LOC113541191
XM_034298051.1 mRNA downstream 6946 17636431 ~ 17653613 (+) False LOC113541191
XM_034298054.1 mRNA downstream 6946 17636431 ~ 17653613 (+) False LOC113541191
XM_034298052.1 mRNA downstream 7270 17636755 ~ 17653613 (+) True LOC113541191
XM_026938144.2 mRNA downstream 49413 17678898 ~ 17706118 (+) True boc
TU394792 other upstream 320099 17287160 ~ 17302004 (+) False G333388
TU394795 other upstream 320406 17292031 ~ 17301697 (+) False G333388
TU394798 other upstream 322092 17285082 ~ 17300011 (+) True G333388
TU394801 other upstream 322092 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 327049 17287160 ~ 17295054 (+) False G333388
TU395491 other downstream 357277 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 685871 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 685873 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 685875 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 686198 18315683 ~ 18323295 (+) True mtfr1

Expression Profile