RNA id: XM_026938037.2


Basic Information

Item Value
RNA id XM_026938037.2
length 2359
RNA type mRNA
GC content 0.41
exon number 9
gene id lztfl1
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10440957 ~ 10477542 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATCACTTCTTCATGGATGTCTTCAACGCTCTACTGCCTATCTTGCTTTAGTGTTCCCTGCTGTCTGTGTGGTAATAGCGCAGTGACGCTGTTCCGTTGCCAGGAGCAACTTACATAGACTGAGGGGAAACGCATGATAGATAACGTAGTTAATTCGCATTTACTAAAATACTGGACGAAAATGATTAACTAGAATTCACGGTGCAGTGCCTTATTGTCCCCATGTTATCACACTAGTTTACACTCTGACGTCTGTATTTTTCTGCATAAAGTCGCATTTTCAGCTTGCTGCCATGGCCGATTTTGGGTTCAACGAACATCACCAGAACGAGGTCATAAACTATATGCGCTTTGCTCGCTCCAAGAGGCTTCTGCGACTCAAGACCATTGACTCATGCTTTCAGGAACTCAAAGACAGCAGACTGGTTGAGGAGACATTTACGGTGGATGAGGTGTCAGATATGCTGGATGGTCTACAGGTAGTGGTGCGTGGAGAGGTGGAGATGGAGCTCATCAACACCGCCCACACCAATGTCCTGCTCCTGCGCCAGCTCTTCTCCCAGGCTGAGAAGTTCTACCTGAAACTGCAGACCGATATCTCAGAGCTGGAGAGCAGAGAATTACTGGAACAAGTAGCAGCATTTGAAAAGACTGATTTTAAATCCAACAGCAAGGTAAATCAGGAATCCAGCAAACCCAAGTTAGCCCCACTGAATGAGGGAGGAGTGTCAGAACTGCTCAACAAGGAAATTTCCAGACTACAAGAGGAGAATGATAAACTGAGAGCTAGACTCCGAACATTGGAAAGTAAGGCCATGAATGCCCTAGATGAGAAGTGCGAGGCTGAGAGGGCCCTGAATGATCTTCAGAAAATCCAGGGAGATCAGCAGCACGCCATGCACGCTCAGGAGATCTCTAAACTGGAGGACACTGTGGCAGCCATGCAGATCGATTTTGAGAAGACGCTTAGTGCCAGTACTGCATCACAGAAGGAGCTACAGGACAGCCTAGTGTCAGCTAAACATGAGCTGCTCCGTGTTCAAGATCACCTCGCCCTTGCTGAGAAGATACGAGTCTGATGAGTGAAGTCCTGGGCCACAGAAAATGGCATGTGTGAAAATGGCATGTGTGAAGGGGCTTTATAGGCAAAAAGGAGCTGAAGTCAGTTTTGGCCTCAACGCTATAAACATGGCAAGGGACcaaagaatgaaacaaaagaagaacaaaaaggaAGTTTTTAATAATCATTGCTATTCCCAAGTTTCTCTTTAACAAGAACTGCCCATTTGATTAAAACTATTGCTGTGCTTAGGGATGTTTGTTGTACCTGTGTGTCCTATGTTCCATTTTGAATGAGGTTATTGTGTGCAGTTTATCATCTAAAATGTACAAGTGTTTCCACTTAAAACTCCCACTTTGTTAGTtgaggcatatatatatatatatatttttttgtctcttagTATGTCATCTGGTCTTGTGCGCCAGCACAGCacttatattttctttcttgtatTGAAAGTTTCGTTGCTATTGCATTAGGAGCAATGATAAATGTTCAGTGACAATGAGCTCTGAATTAAGATGGTTTTAGATAATAGCAATTGAGGCCACTTTCTGATCGATTTTGTCCTTGCTTTCTGTATTTATCTGTGATGGCATGTCTATCTTTCAGCATCTATCAGCATgtctatcttttttttgtcattctgtAGTTTTAGGTTTATTGTGGACTGTATTTACAAAtgattttacatgttttaattgTAGTTTAATAGTAGTTTTCTATCCAGGTTATCCACctaagaaaggaagaaaatgacTTTAAATTGCTTCCTGTATCCACACTACACTAGccagaatatatttttgtaaaaagttAAGTCCATTCACAAACTATGACAGACTGTAGTTATTGAATAAGCACCTGAGGACCTGGGTCATTTGTGCCTGTGTGCACATGCCATGTGCACATGTAGCAACTAAATCACTGTAATAGGGACACTGTAATCTGTAATAGTTGTGGTATTGAGTATGTGGCTGGGATGCACAGCATTATGAACACCATTTCTTTACTTTCCCAATGTTGAAAGTAGCATCATcaagaaaaaacacacttagCCACTGTTAATGTAAGAGTTCCTCTTATTGTACACCACATAAGgcaatattaaacaaaaaaaaaattacagtatgaTAAGCTACCCtattttggaaatgccagtcagcctacaccATGTCTTTTTCAAAAATTCCCCTCAAGTTTTCATGGCATAAATCACGACGTAATTCCTCATTGTAACAAgttctgaaataataaaaatcccaTTAAAGTAAAATCCCCAGAACTATTCTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390972 lncRNA upstream 66900 10362531 ~ 10374057 (+) True G330040
TU390893 lncRNA upstream 160990 10213263 ~ 10279967 (+) True G329976
TU390892 lncRNA upstream 228527 10209923 ~ 10212430 (+) True G329975
TU390881 lncRNA upstream 254020 10174629 ~ 10186937 (+) True G329964
TU390866 lncRNA upstream 276837 10163919 ~ 10164120 (+) True G329949
TU390985 lncRNA downstream 5787 10483329 ~ 10483668 (+) True G330052
TU390989 lncRNA downstream 42349 10519891 ~ 10520607 (+) True G330056
TU390992 lncRNA downstream 55929 10533471 ~ 10533787 (+) True G330059
TU390996 lncRNA downstream 97347 10574889 ~ 10575096 (+) True G330063
TU391001 lncRNA downstream 117660 10595202 ~ 10627892 (+) False gli3
XM_026938241.2 mRNA upstream 14521 10345324 ~ 10426436 (+) True tmx3b
XM_026938242.2 mRNA upstream 14521 10345324 ~ 10426436 (+) False tmx3b
XM_026938243.2 mRNA upstream 53959 10345323 ~ 10386998 (+) False tmx3b
XM_026938046.2 mRNA upstream 99056 10182792 ~ 10341901 (+) True LOC113541200
XM_026938043.2 mRNA upstream 99056 10182793 ~ 10341901 (+) False LOC113541200
XM_026937829.2 mRNA downstream 71186 10548728 ~ 10552018 (+) True ccr9b
XM_034297936.1 mRNA downstream 117588 10595130 ~ 10768360 (+) False gli3
XM_026937846.2 mRNA downstream 117588 10595130 ~ 10768360 (+) False gli3
XM_034297935.1 mRNA downstream 117589 10595131 ~ 10768360 (+) True gli3
XM_026937843.2 mRNA downstream 117589 10595131 ~ 10768360 (+) False gli3
TU390970 other upstream 8093 10431333 ~ 10432864 (+) True G330038
TU390686 other upstream 648224 9791684 ~ 9792733 (+) True G329779
TU390118 other upstream 1584681 8853328 ~ 8856276 (+) False bmp6
XR_004576948.1 other upstream 1621690 8768746 ~ 8819267 (+) False LOC113532648
XR_004576949.1 other upstream 1625397 8768745 ~ 8815560 (+) False LOC113532648
TU390999 other downstream 117660 10595202 ~ 10678375 (+) False gli3
XR_004576967.1 other downstream 396667 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other downstream 396667 10874209 ~ 10984209 (+) False acad11
XR_004576968.1 other downstream 396667 10874209 ~ 10983215 (+) False acad11
XR_004576969.1 other downstream 396667 10874209 ~ 10983215 (+) False acad11

Expression Profile