RNA id: XM_026938040.2


Basic Information

Item Value
RNA id XM_026938040.2
length 3301
RNA type mRNA
GC content 0.45
exon number 21
gene id acad11
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10874209 ~ 10984209 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCGgggttttcagggacatttaaGCAGCGCGTTCACCACACGAGGACGCGAAGTATTGTTTTCGGGACATTACTGagcgttttcttttacattgtttacggttttcttcatgtgtatgaccctggtttgtttttcggatttttgcctttgccttgcgattttgtattatattttctcgctgattgacttcctggttttttCGGACTTTTGCTCTcgtttcctgattgtgtttttgCCTGCCGTTTCGGATTATTCTGCTTTCATCTCTGCTGATGGATCCTACACAACCCGCCTCGGACGAGGCGTTACACTGAGCACTCAGCTCTGTCTCTACCGCCATGTCAGAGGACCTTCAACGGGGTGGGCGAGGTTAACTTTCAGAGCACCTCCCACTGCAAAATTAGTTGACCAATAGAGATTAAAGCTTCACAGCGCAGGAACTATGGATGATCAGACGACCCCTGTTCGCCAGCAACATGTTTTTAACGTAAAGAAACTGCATCGATATTTGATGGGGAGACTTCACGGCGTTTTAGAAAACACTACATTTTCTGTGAGGCAATACAGTTCTGGTCAGTCCAACCCAACATTTCTCATTCAATCTCCACATAAGAGCTTTGTACTCAGAAAGAAACCTCATGGATCTTTGCTTCCTGGTGCTCATAAGgtgGATAGGGAATATGTTGTACAGAAAGCCCTGCACTCCATTGGCTTTCCTGTTCCTCAGCCTCTGCTTTACTGCTCAGACACAGATGTTATTGGCACAGAGTTTTACATCATGGACCACATTCAGGGCCGTATATTCCGGGACCCAAGGCTACCAGGCATCAGTGCAACAGAACGCAGTGCTCTGTATGTAGCTGCAGTTGAGGTGTTAGCCAGACTTCACTCTGTTAATCTCACCACCCTTGGCCTAGTAGGGTATGGGAAAGGGGTTGGTTATGCCAAGAGACAGGTGTCCACGTGGACAAAGCAGTACAGAGCCTCAGCCATCAGAAGCATTCCAGCTGTAGATGtgctttctgattggctgagcaaCAATTTGCCGTCCAATGATGACCAAGTGACTCTCGTACATGGTGATTTTCGAATTGACAACCTGATATTCCATCCATCAGAGgCTCGAGTGCTAGCTGTATTGGATTGGGAGTTATCCACAACTGGGCAACCACTTGCAGACCTGACTTATTTCCTCATGCCCCACTACTGCCCTTCCCATCTAAATATCAGCACTATTCTTGGTGGAGTTACAGGGATAGAGGgcATCCCTCCTGCAGAAGACCTGATCTCCATTTACTGCCAGTGCTGTGGAATCCCTCTTTCACTCTCACATCAGAATTTCTTTATTGCCTTGGCCATGTTTAAAATGGCCTGCATTGCACAGGGTATTTATGCAAGGTCTTTGCTGGGGAATGCCAGTGCTCCTAATGCGGCTCAGTTTGGCGAGAGCGTGGAACCTTTAGTTCAGCTGGCTCTGAAGATTGCCCACAGCTCCTCATTGGCTGTGCAAGTTCCTGATAGGTTATTTCTCCAGTCTGCTAAAGGTTACGCTGTCCTCCAGCAGGTTAAAGAGTTCATGAAAAAACACATACTGCCTGCTCAGAAGGAAGTTACTGAGTACTATGTCAAACACTGTGATGGCCCTGAGAGATGGCAAACACCTCCTGTGCTGGAGGAACTAAAGGCAAAAGCTCGTGCTGCTGGACTATGGAATCTGTTCCTTCCTGCAGTGAGTGGACTATCTCAGCTGGATTACTCCTACATTGCTGAGGAAACTGGCCGATGCTTCTGCGCCCCTGAGGTCTTCAACTGCCAGGCcccagATTCGGGGAACATTGAGGTGCTGCATCTGTTTGGTTCTGAGGAGCAGAAAAAGCTCTGGCTAGAGCCTTTACTGCGAGGAGACATACGATCCTGCTTTTGCATGACTGagCCAGATATTGCCTCAAGTGATGCAACTAACATGGAGTGTACCCTGCGCAAGGATAAAGACCACTACGTCATCAATGGCAAGAAATGGTGGAGCAGTGGTGCAGGCAACCCAAAGTGCAAGATCGCCATAGTGATGTGCAAGAACAAGGCATCTGACAGTATCAGCAGacatGATCAGCACAGTATGATTTTGGTTCCTATGGACACACCTGGTGTGAGGAAGGTCCGACCTCTTACTGTGTTTGGACAAGATGATGCATGTCATGGTGGCCATTTTGAGATACACTTTGACAATGTACATGTTCCAGCATCCAACATTCTTCTAGGTGAGGGTCGGGGGTTCGAGATAGCTCAGGGTCGGCTGGGGCCAGGTAGACTGCACCACTGCATGAGGGCAGTTGGACTGGCAGAGCAGGCACTGGAGCTGCTGTGTCAAAGATCTGGTAGCAGAAGCACCTTTGGCAAAAGACTGTACCAACATGAGGTGGTGGCTCATTGGATAGCAGAGTGTCGCATTGCTATTGAGCAGGTGCGACTATTGGCTCTCCATGCAGCTTATATACTCGACACACAAGGGAACAAGGCTGCAAGGAAAAAgATTGCGATGATAAAGGTAGCAGCTGGCAGGATGGCTTGTAAGGTGGTGGACTGTGCCATTCAGGTACATGGAGGTGCAGGAGTATCTGATGACGTCCCCCTTGCACACATgtataCATATGCACGAACTCTGCGTTTAGCTGATGGTCCTGACGAGGTTCATCTGTCCTCCATCGCCCTAATGGAGCTCAAGGATCAGCTCCGACGAAGAGCTGCTAAACTCTAAACTAACCGCTACTGAAAcctttatttaatcagttatgAAATCTTAATTCACTTTAGGCAAATTATATTACTCAGCATAAACCTATTAATTCTTTACTAATATAagtaatttattcataaatgtcaAGAGCATtatagtgatgatgataatgtggggtccaaaaatctgagagcactagtgaaaaagcttctattttgcattcttttctaatttaatacaattttcattacaaattatattattgaagACAACTTGAGTGAAATGTAGAatcttttgaaatatttacaagaatttcagagtttcttagtatttgatATGTCCCCGTTTTGCTTTAATAACAGTATGCACTTGAACTGGCATGGActtcacaagtttgtgcaaaaccttatgatccatttttgATCAAATCCATTGGCATGTCgactgaacacatgcttcaatagaagagattaggcatgaggtaaatctgaccttttgtacaaagaagttaacatgatcaatatcacaacttgcttacatttaaatagggaaaTAGCAGACTctt

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391058 lncRNA upstream 124170 10749753 ~ 10750039 (+) True G330122
TU391057 lncRNA upstream 128765 10745235 ~ 10745444 (+) True G330121
TU391001 lncRNA upstream 246317 10595202 ~ 10627892 (+) False gli3
TU390996 lncRNA upstream 299113 10574889 ~ 10575096 (+) True G330063
TU390992 lncRNA upstream 340422 10533471 ~ 10533787 (+) True G330059
TU391208 lncRNA downstream 369 10971195 ~ 10971618 (+) True G330259
TU391210 lncRNA downstream 15882 10986708 ~ 10988052 (+) True G330260
TU391307 lncRNA downstream 22998 10993824 ~ 10994253 (+) True G330350
TU391308 lncRNA downstream 27204 10998030 ~ 11001836 (+) True LOC113541116
XR_003404149.2 lncRNA downstream 27214 10998040 ~ 11001838 (+) False LOC113541116
XM_026938026.2 mRNA upstream 13761 10841683 ~ 10860448 (+) True pxdc1b
XM_026938025.2 mRNA upstream 45818 10810606 ~ 10828391 (+) True prpf4bb
XM_026937844.2 mRNA upstream 105849 10595131 ~ 10768360 (+) False gli3
XM_026938117.2 mRNA downstream 151569 11122395 ~ 11308612 (+) True myrip
XM_026938118.2 mRNA downstream 151569 11122395 ~ 11308612 (+) False myrip
XM_026938120.2 mRNA downstream 151569 11122395 ~ 11308612 (+) False myrip
XM_034298231.1 mRNA downstream 151569 11122395 ~ 11275909 (+) False myrip
XM_026938121.2 mRNA downstream 159856 11130682 ~ 11308612 (+) False myrip
TU390999 other upstream 195834 10595202 ~ 10678375 (+) False gli3
TU390970 other upstream 441345 10431333 ~ 10432864 (+) True G330038
TU390686 other upstream 1081476 9791684 ~ 9792733 (+) True G329779
TU390118 other upstream 2017933 8853328 ~ 8856276 (+) False bmp6
XR_004576948.1 other upstream 2054942 8768746 ~ 8819267 (+) False LOC113532648
TU391206 other downstream 2438 10973264 ~ 10974915 (+) True G330257
TU391847 other downstream 767332 11738158 ~ 11748559 (+) True ankha
XR_003404147.2 other downstream 1091506 12062332 ~ 12156787 (+) True prkag2a
TU392341 other downstream 1736113 12706939 ~ 12712678 (+) True G331263
TU392569 other downstream 2287068 13257894 ~ 13258416 (+) True G331476

Expression Profile