RNA id: XR_004576967.1


Basic Information

Item Value
RNA id XR_004576967.1
length 3533
RNA type misc_RNA
GC content 0.49
exon number 23
gene id acad11
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10874209 ~ 10984209 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCGgggttttcagggacatttaaGCAGCGCGTTCACCACACGAGGACGCGAAGTATTGTTTTCGGGACATTACTGagcgttttcttttacattgtttacggttttcttcatgtgtatgaccctggtttgtttttcggatttttgcctttgccttgcgattttgtattatattttctcgctgattgacttcctggttttttCGGACTTTTGCTCTcgtttcctgattgtgtttttgCCTGCCGTTTCGGATTATTCTGCTTTCATCTCTGCTGATGGATCCTACACAACCCGCCTCGGACGAGGCGTTACACTGAGCACTCAGCTCTGTCTCTACCGCCATGTCAGAGGACCTTCAACGGGGTGGGCGAGGTTAACTTTCAGAGCACCTCCCACTGCAAAATTAGTTGACCAATAGAGATTAAAGCTTCACAGCGCAGGAACTATGGATGATCAGACGACCCCTGTTCGCCAGCAACATGTTTTTAACGTAAAGAAACTGCATCGATATTTGATGGGGAGACTTCACGGCGTTTTAGAAAACACTACATTTTCTGTGAGGCAATACAGTTCTGGTCAGTCCAACCCAACATTTCTCATTCAATCTCCACATAAGAGCTTTGTACTCAGAAAGAAACCTCATGGATCTTTGCTTCCTGGTGCTCATAAGgtgGATAGGGAATATGTTGTACAGAAAGCCCTGCACTCCATTGGCTTTCCTGTTCCTCAGCCTCTGCTTTACTGCTCAGACACAGATGTTATTGGCACAGAGTTTTACATCATGGACCACATTCAGGGCCGTATATTCCGGGACCCAAGGCTACCAGGCATCAGTGCAACAGAACGCAGTGCTCTGTATGTAGCTGCAGTTGAGGTGTTAGCCAGACTTCACTCTGTTAATCTCACCACCCTTGGCCTAGTAGGGTATGGGAAAGGGGTTGGTTATGCCAAGAGACAGGTGTCCACGTGGACAAAGCAGTACAGAGCCTCAGCCATCAGAAGCATTCCAGCTGTAGATGtgctttctgattggctgagcaaCAATTTGCCGTCCAATGATGACCAAGTGACTCTCGTACATGGTGATTTTCGAATTGACAACCTGATATTCCATCCATCAGAGgCTCGAGTGCTAGCTGTATTGGATTGGGAGTTATCCACAACTGGGCAACCACTTGCAGACCTGACTTATTTCCTCATGCCCCACTACTGCCCTTCCCATCTAAATATCAGCACTATTCTTGGTGGAGTTACAGGGATAGAGGgcATCCCTCCTGCAGAAGACCTGATCTCCATTTACTGCCAGTGCTGTGGAATCCCTCTTTCACTCTCACATCAGAATTTCTTTATTGCCTTGGCCATGTTTAAAATGGCCTGCATTGCACAGGGTATTTATGCAAGGTCTTTGCTGGGGAATGCCAGTGCTCCTAATGCGGCTCAGTTTGGCGAGAGCGTGGAACCTTTAGTTCAGCTGGCTCTGAAGATTGCCCACAGCTCCTCATTGGCTGTGCAAGTTCCTGATAGGTTATTTCTCCAGTCTGCTAAAGGTTACGCTGTCCTCCAGCAGGTTAAAGAGTTCATGAAAAAACACATACTGCCTGCTCAGAAGGAAGTTACTGAGTACTATGTCAAACACTGTGATGGCCCTGAGAGATGGCAAACACCTCCTGTGCTGGAGGAACTAAAGGCAAAAGCTCGTGCTGCTGGACTATGGAATCTGTTCCTTCCTGCAGTGAGTGGACTATCTCAGCTGGATTACTCCTACATTGCTGAGGAAACTGGCCGATGCTTCTGCGCCCCTGAGGTCTTCAACTGCCAGGCcccagATTCGGGGAACATTGAGGTGCTGCATCTGTTTGGTTCTGAGGAGCAGAAAAAGCTCTGGCTAGAGCCTTTACTGCGAGGAGACATACGATCCTGCTTTTGCATGACTGagCCAGATATTGCCTCAAGTGATGCAACTAACATGGAGTGTACCCTGCGCAAGGATAAAGACCACTACGTCATCAATGGCAAGAAATGGTGGAGCAGTGGTGCAGGCAACCCAAAGTGCAAGATCGCCATAGTGATGTGCAAGAACAAGGCATCTGACAGTATCAGCAGacatGATCAGCACAGTATGATTTTGGTTCCTATGGACACACCTGGTGTGAGGAAGGTCCGACCTCTTACTGTGTTTGGACAAGATGATGCATGTCATGGTGGCCATTTTGAGATACACTTTGACAATGTACATGTTCCAGCATCCAACATTCTTCTAGGTGAGGGTCGGGGGTTCGAGATAGCTCAGGGTCGGCTGGGGCCAGGTAGACTGCACCACTGCATGAGGGCAGTTGGACTGGCAGAGCAGGCACTGGAGCTGCTGTGTCAAAGATCTGGTAGCAGAAGCACCTTTGGCAAAAGACTGTACCAACATGAGGTGGTGGCTCATTGGATAGCAGAGTGTCGCATTGCTATTGAGCAGGTGCGACTATTGGCTCTCCATGCAGCTTATATACTCGACACACAAGGGAACAAGGCTGCAAGGAAAAAgATTGCGATGATAAAGGTAGCAGCTGGCAGGATGGCTTGTAAGGTGGTGGACTGTGCCATTCAGGTACATGGAGGTGCAGGAGTATCTGATGACGTCCCCCTTGCACACATACCCAGCTTCACCACATTTGGTTCTCGGGTCATTGTCTGCCTTACCAACAGCATAGACACATCAACTTCATGCACCACAGAGCCAATTCACTGATCCACATCCCAGTCATGGAACATATCATAGCCTGTGGgtttttttttctcctggaaTCACTCTCCTGTTTctggaatcttttttttcccttctgcaATTGTATTCGTTTCTGACttttggcactttttttttttactggcagTGGGCGTTCACCTTAAATCTCTGTTGGTCAACTGACTGATTTTTTTAGTAGGATGGGCTCTGAAAGTAATACCCACATAAAGGTGGACCAGCCTCTGACATGGAGAAACGAATGGATCCAAGTGCTCAGCAGTAGATGCTGCTGCAGACCACCAGATCTCCTGTGTCCCCTGCCACTGTTCCACCCTGACACTCACAAGATGGCCTCCACTGATGATCCGGAGGTCTTCTTGGTGCTTTTCGAGCATGCAGCAGCTGTGCGGAAATGGCCGAAGGAGGAATGGTCCCTCTGACTCCGAACCTCTTGCTATCCGGGGAAGCCCAGCTTGCCGTCCAGCAGATGCTGTCACAGACACAGCTGCACAACAGCTGAAAGACTCCTGTTGCTAGTGGTTGATGCCAGAGGAGCAGGAAGTGAAACAGATCATCGAGGTGGTGGTACTGGAGCAATTCATCACTTGACTCCCAACAGGACCAGTggagtgggtccagtgccactggCCTGCGTCCCTGGAAGAAGCCGTTAAGATGGTGGAGGATCACTTGGTGGCAGTCCCTGGTCCAGGCACctctctcttccctccctctctctcttctgcccCAGTCCAAGCTCCCCAGAACCGAGGTGCAGGAGGCCCAGAAAATGCAACCCCCTG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K11730 ACAD11; acyl-CoA dehydrogenase family member 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391058 lncRNA upstream 124170 10749753 ~ 10750039 (+) True G330122
TU391057 lncRNA upstream 128765 10745235 ~ 10745444 (+) True G330121
TU391001 lncRNA upstream 246317 10595202 ~ 10627892 (+) False gli3
TU390996 lncRNA upstream 299113 10574889 ~ 10575096 (+) True G330063
TU390992 lncRNA upstream 340422 10533471 ~ 10533787 (+) True G330059
TU391210 lncRNA downstream 2499 10986708 ~ 10988052 (+) True G330260
TU391307 lncRNA downstream 9615 10993824 ~ 10994253 (+) True G330350
TU391308 lncRNA downstream 13821 10998030 ~ 11001836 (+) True LOC113541116
XR_003404149.2 lncRNA downstream 13831 10998040 ~ 11001838 (+) False LOC113541116
TU391437 lncRNA downstream 370411 11354620 ~ 11355001 (+) True G330457
XM_026938026.2 mRNA upstream 13761 10841683 ~ 10860448 (+) True pxdc1b
XM_026938025.2 mRNA upstream 45818 10810606 ~ 10828391 (+) True prpf4bb
XM_034297936.1 mRNA upstream 105849 10595130 ~ 10768360 (+) False gli3
XM_026937846.2 mRNA upstream 105849 10595130 ~ 10768360 (+) False gli3
XM_034297935.1 mRNA upstream 105849 10595131 ~ 10768360 (+) True gli3
XM_026938117.2 mRNA downstream 138186 11122395 ~ 11308612 (+) True myrip
XM_026938118.2 mRNA downstream 138186 11122395 ~ 11308612 (+) False myrip
XM_026938120.2 mRNA downstream 138186 11122395 ~ 11308612 (+) False myrip
XM_034298231.1 mRNA downstream 138186 11122395 ~ 11275909 (+) False myrip
XM_026938121.2 mRNA downstream 146473 11130682 ~ 11308612 (+) False myrip
TU390999 other upstream 195834 10595202 ~ 10678375 (+) False gli3
TU390970 other upstream 441345 10431333 ~ 10432864 (+) True G330038
TU390686 other upstream 1081476 9791684 ~ 9792733 (+) True G329779
TU390118 other upstream 2017933 8853328 ~ 8856276 (+) False bmp6
XR_004576948.1 other upstream 2054942 8768746 ~ 8819267 (+) False LOC113532648
TU391847 other downstream 753949 11738158 ~ 11748559 (+) True ankha
XR_003404147.2 other downstream 1078123 12062332 ~ 12156787 (+) True prkag2a
TU392341 other downstream 1722730 12706939 ~ 12712678 (+) True G331263
TU392569 other downstream 2273685 13257894 ~ 13258416 (+) True G331476
trnat-agu_17 other downstream 2400992 13385201 ~ 13385274 (+) True trnat-agu_17

Expression Profile