RNA id: XM_034298136.1


Basic Information

Item Value
RNA id XM_034298136.1
length 7062
RNA type mRNA
GC content 0.49
exon number 55
gene id LOC113541200
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10182791 ~ 10341901 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACGGGGAAAGAGGGGAACTAACTTAATTAGTGTACCGGTTTTCTCGTTACTTCCTGTCTCTCCAACCAGCTGACAGCCTCGTGACAAGCTGGTGGTCGGCCCATGCGCAGACTTGCGCTTTGTGTAAACCGAACATGGCGCCGTCCTGAGTTTTATTACTGAGCGAAGCGCAGTTGTCAATGCTCAGCGGTACAATTTTcgaaaaaaaggacagaaacaTTGACACGTTTTGGAAGGTTGAGGGTACAGGGACGGAAACAAGTCGCATCTGGTATTAACCCTTAAGGCCTTGCCGGAAGATGAATGTCCTCAAAGAGAATAAAGACTTGGCCTGTTTCTACACAACCAAACACTCCTGGAGGGGGAAGTACAAGCGAGTTTTCTCTATTGGGACACACGGCTTGACAACATACAACCCTACGACATTAGAAGTTACAAACCAGTGGCCTTATGGGGATATATGTGGTATCTCACCAGTTGGAAAAGGACAGGGCACCGAATTTAACCTTACCTTCCGGAAGGGTAGTGGGAAGAAGTCTGAGACACTCAAGTTTTCCACTGAACATCGCACAGAGCTGCTGACAGAGGCGCTGAGGTTTAGAACAGATTTTGCTGAGGGAAAGATAACTGGAAGACGTTATAACTGCTACAAGCATCATTGGAGTGACACACGGAAGATGGTGGGGTTAGAGGTCACGCCAGGGGGCATTGACCAGATCGACCTCCACACCAACCGGGTTCTCTGTTCCTATGATTATCGTTGCATCGAAGGTTTTGCAGAAGTTTCAGACTACCAAGGGGGTTTCTGCATCATCTATGGAGGCTTCAGCAGACTGcACCTCTTTGCATCAGAGCACCGTGATGAGATCATCCGCAGTGCTATTGAGCATGCTGGGAACTTTATTGGGATAATGTTGCGCCTGAGAAAGGAGCCTTTAAGCTTTGAAGGCTTTGTCAGTGAGAGGCTCGGCAAGTATGGTTCAGACGAGAGCATAACGTCCCTTGCTGAGTTTGTAGTGCAAAAGATCTCACCACGACATgcgGAGCCTGTCAAGAGGATCCTGGCCCTCACCGAGACATCTCTGGTGGAAAGAGACCCTGCTTCCTACAACATTGTCACCATCAAACCCTTTGGAGAGGTTTTTGCGCTCATCTGCGATGCCGAGAACCCTCAGATATTCACAGTCGAGTTCATCAGAGGACAGATACGAAAGTACTGCTCCACAGAtagGGACTCTCTGTTGGCCAGTCTATTGGATGGGGTGCGGGCTTCCGGTAACAGAGACGTGTGTGTAAAAATGGCCTCCACTCAAAGAGGGCAGCGCTGGGGACTTCTCAGCATGCCCGTTGATGAGGAGGTAGAGAGCCTCCATCTCAAATTCCTCGCTGCTCCACCCAATGGAAATTTTGCTGATGCAGTGTTCAGATTCAATGCCAACATCTCCTACAGTGGAGTTCTACATGCAGTCACTCAAGATGGCCTTTTCTCAGAGAACAAAGAGAAACTGATCAACAATGCCATCTTGGCTCTCCTGTCCCAGGATGCTGAGTTGGGCGGGCCCAATGCTGAACTGGAGGCCCAATTCCAGGCCATCAGACGACTTGTTGCCTCTAAAGCTGGCTTTCAGGCCTTTACCCAGCTCCCTAAGTTTAGGGAGAGATTGGGTGTGAAGACCGTTAAAGCACTGAAGAGGAACAATAATGGCGTAACGCATGCTGCTATTGACATGCTCTGCGCCCTTATGTGTCCAATGCATGATGATTATGACTTGAGGCAGGAGCAGCTGAACAAAGCCTCTCTTCTATCATCCAGAAAGTTCCTGGAGAGCCTTTTGGAGAAATTCATCAGTAACGTGGACCATGGTACAGGCGCTTTAGTGATCAGTGCACTGCTAGATTTCTTGACCTTTGCACTTTGTGCGCCTTACAGTGAAACGAGTGAAGGCCAGCAGTTCGATATGCTGCTGGAGATGGTGGCCTCCAATGGACGCACACTTTTCAAACTCTTCCAGcATCCCTCTATGGCTATAGTGAAGGGTGCAGGGCTGGTTATGAAGGCCATAATTGAGGAGGGAGATAAGGAAATAGCCACAAAGATGCAGGACTTGGCATTGAGTGAAGGTGCTTTACCCAGACATCTGCACACATCTATGTTCACAATCAGCACTGATCAGAGGATGCTTACgaacagACAGCTGAGTCGTCACCTCGTGGGTTTGTGGACGGCTGAGAATCCTGTTGCTATGAACCTCCTCAAGAGAATCTTTcCAACTGGGCTCCTGGCATATTTGGACAGCTCTGATCCTGTGCCAGAAAAGGACGTGGACAGAATGCACATCCGTGACAACCTCAAGATCGCTTCTGACCAGTTTGGACGCACTAAGGTGCCGGAGTGGCAGCGAATAGCGGGCAAGGCTGCCAAAGAGGTAGAGAAGTTTGCTAAAGAAAAGGCTGACCTGGTGCTCATGCACTGGAGAGACAAGATGGGCATTGCACAGAAGGAGAACCCAAACCAAAAACCTGTTGTCTTGAGGAAGAGAAGACAGCGGATCAAGATAGAGGCCAATTGGGAGCTCTTCTACTACAAATTTAATATGGATCATGCACAGTCGAATCTAATCTGGAACCTGAAGACTCGTGAGGAGCTGCGTGATGCTCTGGAGGGAGAAATGCGCTCCTTCAGTGTAGACCGAGAGCTTGGGAGCACCAATGTGATTTCCTGGAATCATCAAGagtttgagGTGAAGTATGAGTGCCTTTCTGATGAAATCAAAATTGGGGATTATTATCTGCGCCTTCTGCTGGAGGAGGATGAGAATGAGGAGTCTGGAGCCATCAAGAGATCGTATGAGTTCTTTAACGAACTATATCATCGTTTCCTCTTAACACCCAAGGTGGCAATGAAGTGTATGTGCCTGCAGGCTCTGACGATAGTATATGGCAAGTGCTGTGAGGAAATCGGCCCTTTCACCGACACCAAATACATTGTGGGCATGTTGGATAGGTGTACTGATAAactagagagagacaggcttATTCTCTTCCTCAACAAGCTCATTCTGAACAAGaaaaatgtcaagGACATAATGGACTCAAATGGTGTGCGCATTCTAGTAGACTTGCTGACCTTGGCCCACCTGCATACAAGCAGAGCTACTGTTCCActacagAGTAACGTATTGGAAGCAGCTCCagacatgaagagagagagtgagaaggagTGGTACTTTGGGAATGCTGATAAGGAAAGGAGAGGACCTTTTAGTTTTGAGGAGATGCAGGAGTTTTGGAAATCAGGCACACTGACTGCGAAGACACGGTGCTGGGCACAGGGCATGGATGGCTGGCGCCCTCTCCAGGCCATTCCACAGCTGAAGTGGTGCACTCTGGCCAGTGGGCAGGCCGTGATGAATGAAACAGACCTGGCCACACTGATCCTCAATATGCTCATCACCATGTGCTCTTACTTCCCTAGCAGaGATCAGGACAATGCCATTATCCGTCCTTTACCCAAAGTGAAGAGGCTAATTAGTGACAACACTTGCCTGCCCCATATTGTTCAGctgctgctgacctttgaccccatcCTGGTAGAGAAGGTGGCCATCTTGTTATACCTGGTGATGCAGGACAACCCCAACCTGCCACGTCTTTACTTCActggtgttttctttttcatcatgaTGTACACGGGCTCTAATGTGCTCCCAGTGGCACGTTTCCTGAAATACACTCACCTGAAGCAGGCTTTCAAATCAGAAGAGGCTAAAGGTCAAGACATTGTGCAGAGGAGTGTGTTAGGGCCAGTGTTACCTGAGGCAATGGTGTGTTACCTAGAGAATTATGAGGCTGAACACTTCTCAGAGATCTTCCTGGGAGAGTTTGACACTCCTGAAGCAATCTGGAGCAGTGAGATGAGGCGTATGATGATAGAGAAGATTGCTGCTCACCTGGCTGATTTCACTCCTCGGCTCCAGAGCAACACTCGTGCTCTGTATCAGTACTGCCCCATTCCTGTAATTAGTTTTCCTCAGCTGGAATATGAGCTGTTCTGCAACATCTACTACCTCCGTCACCTCTGTGACTCCAACCGCTTCCCTGACTGGCCTATACGGGATCCGGTAAAGCTATTAAAGGACACATTGGAAGCCTGGAAAAAGGAGGTGGAGAAAAAACCTCCCTCCATGTCAGTGGATGATGCCTATGAAGTGCTGAACCTTCCCACTGGACAGGGCCAGCATGAGGAGAGCAAAATCAGGAAAGCATATTTCCGATTGGCTCAAAAATACCATCCAGACAAAAATCCAGAGGGCAGGGACACTTTTGAAAAGGTGAACAAGGCATATGAGTTTCTGTGCACTAAATCTGCGAGAATCATAGATGGACCAGACCCTGAAAACATCATCCTTATCCTCAAGGCCCAGAGCATCCTCTTCAACCGACACAAACAAGAACTGGAGCCATATAAATACGCAGGCTACCCCATGcttattaaaaccattaccatggAGACCAGTGATGAGCAGCTTTTCTCCAAAGCATCTCCACTCTTGCCAGCAGCTTCTGAGCTCACCTTCCACACGGTCAACTGCTCAGCACTCAATGCTGAGGAACTGCGGCGAGAAAATGGCATTGAGGTCCTGCTTGAGGCGCTGTCTCGCTGTGTGGCTGTGCTTACGGCTTCCAGCAAAATGGAGGACATGGCAGTACAGGTGTGCGGCCACATCTGTAGGTGCTACAGTGTAGCTGCTCAGTTTGAGGAGTGCAGAGAGAAAATCATTGAGCTTCCAAACATCATCAGAGATGTTTGTCACATACTATATTATGGCAAAGCTCTTCCTCGTCTTGCCTTGCTAGCTGTGGAGAGTGTGAGCTCGTTCTCTGTGGACTTCTTTCTCCAGACGCGTATGTATCAGGCTGGTGCACTCTGGCCGCTGCTTCTCAGCCTCTTTAGTTATGACTTCACACTGGAGGAGAGTGGGGTCCAGGCCAGCCAGGAAACCAACCAGCAGCATGTAGCCAACAGCCTGGCCAAACTCAGTCTGACAGCTCTTGGCCGCCTTGGAGGCTACAGGGCTGGAGCAGAGGTTGAAGGGAATGGGACAAAGCAGAATGGGGGTGGGCCAGAGCCACCTCCAGAGAACCCTGCAGTCAGGAAGAGTCTGGCGGCCATGCTCACACCATACATTGCCCGTAAACTGGGCACCAGCTCACCTGCTGAGGTGCTAAAGTTGGTCAATTGTAACTCGGAGACACCATATCTGATCTGGAACAATGGAACCAGAGCTGAGCTCCTTGAGTTTCTTGAGGCACAGCAAGAAGGAAACATAAAGAGGGGTGAATGCGACAAAAGCTTTGGAGCAGAGTTTGTCTTCAGTGAGCACAGTAAAGAGCTCATTGTGGGAGAGATCTTTGTTCGCGTTTATAACGAGCAGCCTACCTTTCCTCTGGAGTATCCAAAAATGTTTGCGGGAAGTCTTCTGGACTATGTGGGTTCTCAGGCACAGTACCTCCACACACTGCTGGCAATGACACAGACAAATAAACTGGAGTCACAGCAGCATGCTCACAGACTACACTGGGCTGAGATGGCCTTGGAAGCACTGTGCAACGTTATGAAGAACAACCCAGGCTCTGAAACAGAGTGCATTGGCCATTTTAAACTGCTCTTTTCCCTGCTCAGAGTCCATGGGGCTGGGAAAGTTCAGCAGCTAGTCCTGGAGGTTGTGAACAGTGTGACTTCAAATCAGGAATGTGTCAGCAACATAGCTGAGTCTCTGGTGTTGGCCAATCTGCTATTATTGCTGCACTCCTTACCATCCAgcaggcagCTTGTCCTGGAGACTCTGTATGCCCTCACTTCTAACACCAAGATTGTCAAAGAGGCAATGACCAAAGGTGCACTGATCTACCTATTGGATCTGTTCTGTAATTCCACTCACCCTCAGGTGCGCACTCAAACAGCTGAACTCTTCTCCAAGATGTCTTCAGACAAGCTTGTGGGCCCCAAGGTGCGTCTGATCCTGGTGCGTTTTCTGCCAGGCGTTTTTATGGACGCCATGCGAGACAATGCTGAAGCCGCTGTGCACATCTTTGAGGGCACTCATGAAAACCCAGAGCTGATTTGGAATGATGCATCACGAGAGACCGTCTCCACCACCGTCCGGGAAATGATGCTTGAACACTTCAAGCAGCAAAAGGATAATCCTGATGTCAATTGGAAGCTTCCTGAGGACTTCACAATACCGTATGCAGGGGGGCAGGGTGAGCTGGAAGTGGGTGGAGTGTTCCTGCGAATCTTCATTGCTCAGCCAGGCTGGGTGCTGCGCAAGCCTCGAGATTTCCTTGTCTCCCTGCTCGAGACCTTCACTGAGCTGCTGGAGAAGAACCACCCTAATGGTGAGGCGTTAGAGACGGTCACCacagcagctgtgtgtttgttcagtACTCAGACTCAGTTGGCTGATCAGGTTCCTCCTCTTGGTCACCTGCCTCGAATCTTAGCAGCCCTCAACCACAAGGACAACGCTGTTCCTAAAAGCTCCATCCGCCTAATCCATGTCCTCTCAGAGAATGAGTTGTGTGTACGCTCCATGGCAGCTTTGGAGACCATCGGGCCATTGATGTGTGGGATGAAGGTCAGGGCTGATATGGCAGGACTAGCATGTGAAGCCCTCAACCGCATGTTCCAGCGAGAGCAAACCGACCTAGTTGCACAGGCGCTTAGAGTAGAACTGGTGCCATATTTGCTGAAGCTTTTAGAGGGAGTAGGATTAGAGACTCTGGACAACCCCTCAGCAACCAAAGCCCAAATTGTCAAAGCCCTTAAATCCATGACTCGCAGTCTACAGTATGGAGAACAGGTGAATGAAATTCTGTCTCGATCCACTGTGTGGAGTGCCTTCAAAGATCAAAAACATGATCTCTTCATCTCGGAATCACAGACTGCAGGCTTTCTGCCAGgtCCGGCAGTAGCAGGCTATCTAACTGCTGGCACGGGTGCTACAGTTTTGTCCAGCGTCCCTCCACCTGTAGACAATGACATTGGAGACCTGGGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390866 lncRNA upstream 18671 10163919 ~ 10164120 (+) True G329949
TU390859 lncRNA upstream 24206 10158355 ~ 10158585 (+) True G329942
TU390850 lncRNA upstream 43814 10138755 ~ 10138977 (+) True G329933
XR_004576972.1 lncRNA upstream 195202 9985422 ~ 9987589 (+) True LOC117595795
TU390724 lncRNA upstream 248679 9856248 ~ 9934112 (+) False cdh19
TU390972 lncRNA downstream 21578 10362531 ~ 10374057 (+) True G330040
TU390975 lncRNA downstream 71824 10412777 ~ 10445475 (+) True G330043
TU390976 lncRNA downstream 72228 10413181 ~ 10461730 (+) True G330044
TU390982 lncRNA downstream 112030 10452983 ~ 10454904 (+) True G330049
TU390985 lncRNA downstream 142376 10483329 ~ 10483668 (+) True G330052
XM_026924215.2 mRNA upstream 244323 9856182 ~ 9938468 (+) True cdh19
XM_026924216.2 mRNA upstream 244323 9856182 ~ 9938468 (+) False cdh19
XM_026924217.2 mRNA upstream 245539 9856182 ~ 9937252 (+) False cdh19
XM_026924859.2 mRNA upstream 495300 9621680 ~ 9687491 (+) True gnal
XM_026924861.2 mRNA upstream 504590 9621679 ~ 9678201 (+) False gnal
XM_026938243.2 mRNA downstream 4370 10345323 ~ 10386998 (+) False tmx3b
XM_026938241.2 mRNA downstream 4371 10345324 ~ 10426436 (+) True tmx3b
XM_026938242.2 mRNA downstream 4371 10345324 ~ 10426436 (+) False tmx3b
XM_026938037.2 mRNA downstream 100004 10440957 ~ 10477542 (+) False lztfl1
XM_026938034.2 mRNA downstream 100008 10440961 ~ 10477542 (+) True lztfl1
TU390686 other upstream 390058 9791684 ~ 9792733 (+) True G329779
TU390118 other upstream 1326515 8853328 ~ 8856276 (+) False bmp6
XR_004576948.1 other upstream 1363524 8768746 ~ 8819267 (+) False LOC113532648
XR_004576949.1 other upstream 1367231 8768745 ~ 8815560 (+) False LOC113532648
TU389909 other upstream 1516955 8615073 ~ 8665836 (+) False G329111
TU390970 other downstream 90380 10431333 ~ 10432864 (+) True G330038
TU390999 other downstream 254249 10595202 ~ 10678375 (+) False gli3
XR_004576967.1 other downstream 533256 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other downstream 533256 10874209 ~ 10984209 (+) False acad11
XR_004576968.1 other downstream 533256 10874209 ~ 10983215 (+) False acad11

Expression Profile