RNA id: XM_034298091.1


Basic Information

Item Value
RNA id XM_034298091.1
length 5260
RNA type mRNA
GC content 0.52
exon number 37
gene id prex2
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16326985 ~ 16443144 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGCCAGGTTTCAGATTTACGATGAGTACTGTGGAAACCATGAGAAAGCCCAGAGGCTGCTGCTGGAGCTCAACAAGATCAGAAGTGTTCGCACATATCTTCTGACTGCATGCTGTTGGGAGGCAGAAAGAACACAGAAGTTCCTTTGGAAGGGTACCTGGTGGCTCCCATCCAGAGGATCTGCAAGTATCCTCTGCTCCTCAGAgAGCTGCTAAAAAGAACGCCAAAGAAGCACAACGATTACTCCATGGTGCACGAGTCCCTCCAAGTGATGAAGGCGGTGTGTTCAAGCATCAACGAAGCcaagagacagatggagaagcTGGAGGTGCTGGAGGAATGGCAGTCGCACATTGAGGGATGGGAGGGCTCCAACATCACAGACAGCTGCACAGAGATGCTAATGCAGGGTGTGCTGCTGAAGATCTCAGCGGGGAACATCCAGGAGCGGGTCTTCTTCCTCTTTGACAACCTGCTGGTCTATTGCAAAAAGAAGAACAGGCGTTTGAAGAACAGTAAGGCGGCTACTGAGGGCCCACGGTACCAGTTCCGCGGACGAATCAACACCGAGGTGATGGAGGTGGAGAATGTGGATGACggtacagCGGACTACCACAGCAGTGGGAACATCGTCAACAACGGCTGGAAAATCCACAACACTGCGAAGAACAAGTGGTTTGTGTGCATGGCCAAAACGCCTGAAGAGAAGCAGGAGTGGCTGGAGGCCATTTTGAAGGAAcgagaaaggagaaaatCACTGAGATTGGGGATGGAGCAGGACACTTGGGTGATGATTTCGGAGAAGGGCGAGAAGCTCTACAACCTCTTGAGCAAACAAGGCCACCTCATTAAGGACAGGAAACGAAAGCTCACCACCTTCCCGAAGTGCTTCCTGGGAAGTGAGTTTGTGGCCTGGTTAATGGAGATCGGCGAGACGGATAACCCTGAAGAAGGTGTTCACCTGGGCCAGGCTTTGCTGGAGAATGGCATCATCCACCACGTCACAGACAAGCACCAGTTCAAACCCGAACCGCTGCTCTATCGTTTCCGCTACGATGACGGCACGTACCATCCACGCAGTGATATGCAGGATGTCATCTCTAAGGGTGTGAGGCTGTTCTGCCGGCTCCACAGTCTCTTCACACCAGTGATCAGGGATAAAGATTACCATTTAAGAACATACAAATCTGTAGTGATGGCCAACAAGTTGATCGACTGGCTCATAGCACAGGGTGACTGTCGAACAAGAGAAGAAGCACTGATCTTGGGGGTGGAGCTGTGTGACAACGGATTCATGCATCATGTGCTGGAGAAGAGCGAGTTCAAAGACGAGCCCCTTTTGTTCCGCTTCTTCGCCGAcgaagagatggagggatcgAATACCAAGCACAAGCCCATGAAGCACGATCTGAAAATAGTCGAAAATGTCATCGCTAAGTCTCTGCTGATAAGGCCTAGTGATGGAGGATATGGCTTCACCCTCGAGGATCGTAACAGAGTTCCAATTATCAAGTCGGTGGAGAAAGGCTCTTACGCAGAAATGGCTGGGATGGAGGTGGGGAAGAAGATCTTTGCTATCAACGGAGACCTGGTTTTCTTAAGGCCATTCCATGAAGTGGAAGCATTTCTCAAGCAGGGTTTCAGCAGCAAGGATCCTCTTCGAGTGCTGGTCAGCACCAAACCTCGAGAAACTGTGAAGATCCCAGACTCGGCGGATGGGCTGGGCTTTCAGATCCGTGGCTTTGGCCCATCTGTTGTGCATGCCGTTGGCAGAgGCACTGTGGCGGCTGTGGCAGGTCTACACCCGGGTCAGTGCATTATCAAGGTCAATGGCATTAATGTGAGCAAAGAGAGTCACGCCAGTGTGATCGCCCATGTCACAGCCTGCAGGAAATACCGCAGACCCTCGCAGCAAGACTCCATAAAGTGGGTGTATAACAACAGTGAGAGTGCCCTGGAGGACCACCAGAAGGCCAGCCAGAAACCTAGTACTGAGGAGAATGGGGAGGTGTTCGAGTGTAAAGTGGAAGAGGTCATGGACAAGTTCAATACCATCGCTTTGATAGATGGGAAGAAGGATCATGTGAGTCTGACGGTGGATAACGTGCACCTGGAGTATGGTGTGGCTTACGAGTACGACAGCACAGCTGGGATCAAGTGCCACGTACTGGAGAAGATGGTGGAGCCAAAAGGCTTCTTCAGCCTCACAGCTAAGATCCTGGAGGCCTTGGCTCGGAACGACGAGCAGCTGGTGCAGACGTGCAGCCGGATAAACTCCAGCACAGAGCTTGTCCCAGAGGAGCTGCAGCTCAGGTTCAGCTCAATGTGTGCGGAGAGACTCGAGCACATCAACCGCcgcatcaccaactacaggaagTTTTCCCGGGTGCTGAAAAACAGAGCCTGGCCTACATTCAAGCAAGCCAAAACCAAGGTGTCACCTCTCCACAGCAGCGATTTCTGCCCAACAAACTGCCACATTAACGTGATGGAGGTGTCCTACCCCAAGACCACAACATCTCTGGGAAGCGCTTTCGGTGTGCAGTTGGACAACAGGAAGAATTCCACGCTGGAGAAAGGGAATCACAGCGCAGAGCAGGGCAAGCTGAACCCCATGGTGCACGTGCAACACTGCATCACCAGCATGGCCGCTCCATCGGGACACAGTCTGGGCCGAACGGAGGGACACGGCCTGCGCTTCCTGCTGCGAGAGGAAGACCTGCTCACCGTCGACGCATACCACAAACTGCTCACCAAACTGAACACGGCAATGAAGGAGATGGAGTGCTACGCTGGACAGATTCATGATTTGCTGTCGTCCATCACGCACCCCAGCAGCCCTGAGGCGAAGCCGTCTGAGAGCTTCATCTCGGCTGAGAGCGAGTGTGAGCGAGCCGAGCGGAACGGGAAACGAGTGTGTTTCAACGTGGCAGGAGACGAGCAGGAGGACTCGGGTCATGACACCATCAGCAACCGAGACTCCTACAGTGACTGTAACAGTAATAGGAACTCCATCGCATCCTTCACCAGCATCTGCAGCAGCCACTGCAGCTCCTACGTCCACAGTGACGAGATGGACTccggagacgAGATGCCTGCCAGCATGTGGATATCTCCTGACAAGCAGAAGAAGCTCCACGGCTTCCTGGAGCATCTGTTCAGCCAGGTGGAGTCTATCACGAGCATCCTGAAGGGGGCGACAGTGGCTCGGGCCTTTGAACAGACAAAGTGTTTCACACCAGGTCGGAGCctacaagaCTTTCACCAGGACATGGAGCCCAAAGTCAACTGCACCAAGAAACTGCGGCTTCACATTAAACAAGACCCATGGAACCTCCCAAGCAGCGTTCaggctctcacacacaccatcagcaaGTTTGTAGAAGaggTCAAAACAAGACTGCTGTTGGTGTTACTCCAGTATACAGACTCTGAGATCCAGCTGAGGAGAGACATGGTGTTCAGTCAGAGTCTGGTGGGAGCCGTGTGTAGTTTTGCTGAACACTTGCTGGCCGTGTTGAATCGGGTGCTTGGTGGAGAGAGTGAAGCTCAGGAGAGTCGCCGCTGGCTGGAGCAGATCTCTCACACCGGCCTGCTGCTGCACTTCCAGTCCCTGCTCTCACCCAacctgACCGATGAGCAGGCCATGCTGGAGGACACGCAGGTCGCACTGTTGGACCTGGAGAAGGTCACCTTCCATTTCAGACGCTTCGATGGAGAGCCACTCGTTGCGAacatgCCCATCTCCTACCAGGTGGAGGGCACGAGGCAGGCCATGAAGGTGTATTTCTATCTAGAGGGTTTTTACTTCGAGCAGCTGCCTCAGAGACTGAGACACGGCGATGGATTCAGGATCTACCCCATCCTATTCACTCAGGccCTGGAGAGCATGGAGGGTTATTACTACAGGGACAGTGTCTCAGTGGAGGAGCATCAGGCTCAGATCAACGCTACCTCGCTCGAGAAGGTCAAACAGTACTACAAAAGACTCAAGGCCTTTTACCTGGACAAATCCAACCTGAACCCAACTTTGGCTCCCAAGGCTGCCTTCATAGACAAGCTCATGCGTCCCTTGAACGCTCTGGATGAGCTGTACAGACTAATGGAGAGCTTCATCTCGTGCCGACGCACTGCTGCGTGTCAGTTCACGGCGTGTGGAGCGTCTGGAGTCGGGCTGCTTACCGTGGCGTCTGAGTTGTGCAGCCGTCTCGGAGCCTGTCACATTGTCCTTTGTAACAGCGGAGTCCACCgCTGTACTCTGAGTGTGACTCTGGAGCAGGCCATCGTTCTGGCGCGCAGTCACGGCCTGCCACCGCGCTGTATCATGCAGGCCACTGACGTCATGAGGAAACAGggGGCCAGAGTGCAGAACTCGGCCAAGAACCTGGGAGTGAGAGACCGCACCCCGTCTTCGGTGCCAAGactGTATAAGTTGTGCCAACCTCCACCCCCTGACGGTGACCCATGACTTCCGAACCTATACAGCCATGTTGGATCTCGAGCAGCCGTAGTCCAGCCtctcccacaaacacacacacatcctgaggGTTGCGTCTGGAAGTCCACCCACTCTCACTCTCCGAGGGATTTGCCGTATTCGTGCCTCTCTTCACCACATCAGGGTTATCAGAGCTTTTTAAAACCCATGTTGTTGTGGTTACAGGCTCCATCTTATTCCAGAAAGGAGATCAAAACACGCGGGATGTTTTTGTCTCCAGGCTGCAGTCTGAATCAGTGACATGTCAATCAAACCAGACACCTCATATTATttgttatagaaatgatatCTGAAATGAGACAAAGTCTCTGCGGCACTCACAGAAAGCTTTGACTTTTGGTGTGTTATTGCTTTGAAATGAACTCGAGGAAGATGGATAAAGAAGAGACTGAAAGCCTTTATAGTCTGTACTGATGTGTATTCGCTGTTTTCTAGAAGCATAAATTAGACGTGTACATTCTCAAGTTTAAATGTTGAAGAATGCAGATTAACTCGAAGTGTCAAGATGAAAGATCCAGTGtctatcatttaaaatatgaagTTATCAGTGTTACTATTATGTAGTGTATACGAATCCTCAAATATTTTGTACTCAGGAGTAATTCTATATGTTATAATATCTCAGTGCTGGTTAGTATAATACAGGAAAAGGAGTTTTTTTTACTATGCAAATGAATGAAGGAGAAAATTCCACCAGCTGTCTCTGTGCCTGCAATATCTTTTgtggtaaataaaaacaagactcAATAGTCGAGATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394160 lncRNA upstream 131829 16219553 ~ 16220945 (+) True G332859
TU394074 lncRNA upstream 250177 16102271 ~ 16102597 (+) True G332791
TU394073 lncRNA upstream 250562 16101750 ~ 16102212 (+) True G332790
TU394071 lncRNA upstream 311187 16041384 ~ 16041587 (+) True G332788
TU393930 lncRNA upstream 735540 15592088 ~ 15617234 (+) True G332650
TU394510 lncRNA downstream 152637 16595781 ~ 16620089 (+) True G333157
TU394501 lncRNA downstream 162004 16605148 ~ 16633783 (+) True G333148
TU394614 lncRNA downstream 289772 16732916 ~ 16829979 (+) False G333232
TU394612 lncRNA downstream 328859 16772003 ~ 16829979 (+) True G333232
TU394631 lncRNA downstream 445762 16888906 ~ 16889729 (+) False LOC113541357
XM_026938234.2 mRNA upstream 133761 16200496 ~ 16219013 (+) False LOC113541322
XM_026937906.2 mRNA downstream 1519 16444663 ~ 16529117 (+) True c22h8orf34
XM_034298094.1 mRNA downstream 94509 16537653 ~ 16632052 (+) True sulf1
XM_026938283.2 mRNA downstream 195961 16639105 ~ 16684971 (+) True LOC113541353
XM_026937856.2 mRNA downstream 362502 16805646 ~ 16818439 (+) True LOC113541068
XM_026937855.2 mRNA downstream 362505 16805649 ~ 16818439 (+) False LOC113541068
TU393912 other upstream 786111 15566175 ~ 15566663 (+) True G332636
XR_004576981.1 other upstream 1088187 15251635 ~ 15264587 (+) False si:ch73-173p19.2
trnat-agu_17 other upstream 2967500 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 3094358 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 3640096 12706939 ~ 12712678 (+) True G331263
TU394735 other downstream 664328 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 664328 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 841938 17285082 ~ 17300011 (+) True G333388
TU394792 other downstream 844016 17287160 ~ 17302004 (+) False G333388
TU394797 other downstream 844016 17287160 ~ 17295054 (+) False G333388

Expression Profile