RNA id: XM_026938055.2


Basic Information

Item Value
RNA id XM_026938055.2
length 3197
RNA type mRNA
GC content 0.54
exon number 26
gene id pld1b
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20445239 ~ 20488144 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCATGACGGCCAGAGAAGCGCGTGCACGCTGGGTTTGGGCGCGTCCCCGCTGTGAGGAAgcgcagagcagagcagaggagAGCACTTGGGATGGTCAGGAGTTCTGACTGAATTTCTTCTGAGGAGAGCTCTGGCCGGGAGGCTAAGTGTTAGCCATGATGCAGCAGGACATCGCCACAGCCAGCACACTGCAACTGGTGGCCTCAGACATGACCGACATCATGGAGAACCTCGACACACGTGAGCTGGATATCGGAGACGGCGAGGATGTGTTCGAAGGACCGGGCGCTAACAGTGCagGAGCTCGTATCCCGTTCTCTCTTATCTACAAGACGATGGGATTTAAAGAACAGGATGCTCgagtcttcctcacatcatATCCCATCACTGCCAAAATCCTGGAGGTGGAGCGCTTCGCCTGTGCCCAGGACCGCTTCAACCTCACCAACCAGAGGAGTGTGTCCAagAAACTTCCCGCAGTTTTCAGGATCGAGATGAAACACGGGAACTTCACCTGGATAGTGAAGAGGAAGGAGAAGCACTTCATGGAGCTGCACAGAGAATTACGGACCTACAAAACCTTCCTGAAGATTCCTCTGCCCTCTCGCGCtcacACAGAGCGGAGGCAGACGGTCAGACACACACGTCAGATGCCCACGTTACCGCGCGGCGGAGGAGACGAACTCGCCCGAGAGGAGCAAGTGTCCAGCCGGAAGCGCCAGCTCGAGGATTATTTAAACAAGCTGCTAAAAATGCCTCTGTACAGAAACTACCACGCCACCATGGAGTTTATTGATGTGAGTCAGCTGTCGTTCATTCATGATTTGGGACCAAAAGGCTTAGAAGGCATGGTCCATAAAAGGTCAGGAGGTCACCGGATTCCCGGACTCAACTGCTGCGGCCACGGTAAAGTCTGTTACCGCTGGTCCAAACGttggctGATGGTGAAAGATTCTTTCCTGCTCTACATGAAGCCTGACTCCGGCGCTATCTCCTTCGTCCTCCTGGTGGATAAAGAGTTCTGTGTAAAAATGGACTCTAAAGACACGGAGACGAAACACGGCGTTCGAGTGGACAGTCTGTGCAGGAACCTGGTTCTGAAGTTCTCCAGTTACCGTCACGCCCGCTGGTGGGGTCAGGCCATCGACGACTTCGTGCGCAAACACGGCAGCGCCTTCCTCCAGGACCATCGCTTCGGTTCCTTCGCCAGTGTGCAGGAGAACATCCCCTCCAAATGgtatGTGAACGGTAAAACATACATGGAGGATGTGGCTAATGCGCTGGAGGAAGCTGAGGAGGAGATCTTCATCACAGACTGGTGGTTGAGTCCGGAGATTTTCCTCAAAAGGCCGGTGGTTGAAGGAAATCGCTGGCGTCTGGACTGCATTCTGAAACGCAAAGCTCAAAAAGGAGTTCGGATATTTGTTCTGCTCTATAAGGAAGTCGAACTCGCTCTCGGGATCAACAGTGAATACAGCAAGAGGACGCTGCTGCAGCTTCACCCCAACATCAAGgtGATGCGACATCCTGACCATGTCTCCTCCTCCGTCTATCTGTGGGCTCATCATGAGAAGATTGTGGTTATTGACCAATCAGTGGCCTTCGTGGGCGGGATTGATTTGGCGTACGGGCGCTGGGATGATCGAGAGCACCGGCTAACAGATGTGGGGAGCGTTACGAGAACCCTCAACACGTCTGCAGAGaacGTAACAGAAGCGTCTCCCTCCACGGCGTCTCCCTCGAACGGTCCTGCACAGAGTAACGGTAAAAACTCCGGCAGGGATTCGGAAGATCAGCCCAAGCTCAAAGGTTACGGGAAAAACAGGAGGAGTCGCTTCAGTATCAGGAAACACCTGCAGAGACACGGGCTGGCGCACGCCGACAGCGTGAGCAGCGCTGAGAGCTCAGAGGAAAATGCAGAATCGACTCAGGACCTGCAGGCCGATGTCATCGGTCTGATGGGGAACACGCGGTTCTGGCACGGCAAAGATTACTGTAATTTTGTGCACAAGGACTGGATCCAGCTGGACAAACCGTTTGATGATTTCATCGACAGACACATCACTCCCAGAATGCCGTGGCACGACATCGCCTCGGTGGTTCATGGGAGAGCTGCGAGAGACGTCGCGCGGCACTTTATACAGCGCTGGAATTTTACCAAGATCGTGAAGCCGAAGTACCGCTCTCTCTCGTACCCGTACCTCCTCCCCAAATCCCACACCACTGCCAGCGAGATCAAGCACCAGCTCCCGGGCTGCGTTCACACGAAAGTTCAGGTGTTACGCTCTGCGTCTGATTGGTCCGCTGGTATAAAGTACCACGAGGAGTCCATCCACAACGCCTACGTCCACGTGATAGAGAACAGTAAACACTACGTCTACATCGAGAACCAGTTCTTCATAAGCTGCGCTGATAACAAGCTCGTCTTCAATAAGATCGGAGACGCCATCGCTCAGAGGATCATCAAAGCCTACAGGGAGGGGAAGAGGTACCGAGTGTATGTCGTCACTCCTCTCTTACCCGGATTTGAGGGAGATATTAACACCGGAGGAGGAAGCGCCATCCAGGCCATCATGCACTTCAACTACAGAACGATGGTTAGAGGAGAACATTCCATCATGTCCCAGCTGAAGAAAGAGATGGGAGATCAGTGGATGAACTACATCTCGTTCGGGGGACTGAGGACTCACGCTGAACTGGAGGGAAAACTGGTGACGGAGTTAATCTACGTTCACAGCAAAATGCTCATCGCAGACGACAACACGGTCATCATCGgttCGGCGAACATTAATGACCGCAGTATGTTGGGAAAGCGGGACAGTGAAGTGGCTGTTATTTACGAGGACACGGAGACCGAGACGTCTGTTATGGATGGACAGGAGTACCAGGCAGGACGTTTCGGACTGCAGCTCCGGCTGGAATGTTTTAGGACGATCCTCGGCGCTCACACAGACTCCAGCATCGACATCTCAGACCCCATCAGTGACCAGTTCTACAAGGAGGTGTGGCTGACCACTGCAGCTCGCAATGCCACCATCTACCAGAGGTGTTCCGCTGTTTGCCGTCGAGTGACGTGAGGACGATCCTGGAGTTGGAAGGATATCTGTCCAAGTCCAGTTTGGATAAAGAGGATCCTCTGAAAGCTCAGGAGGAACTTAAGAAGATCCGAGGCTTCCTTGTCCAGTTTCCTCTCTCC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0035091 phosphatidylinositol binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397267 lncRNA downstream 252197 20121516 ~ 20194381 (-) False G335498
TU397272 lncRNA downstream 254792 20138175 ~ 20191786 (-) False G335498
TU397270 lncRNA downstream 254792 20159122 ~ 20191786 (-) True G335498
XR_003404154.2 lncRNA downstream 273654 20167317 ~ 20172924 (-) True LOC113541188
TU397218 lncRNA downstream 385419 20060024 ~ 20061159 (-) True G335460
TU397629 lncRNA upstream 72029 20560173 ~ 20564445 (-) False stag1b
TU397652 lncRNA upstream 172484 20660628 ~ 20661829 (-) True G335800
TU397687 lncRNA upstream 256415 20744559 ~ 20745016 (-) True G335831
TU397718 lncRNA upstream 434763 20922907 ~ 21002111 (-) True G335859
TU397730 lncRNA upstream 528802 21016946 ~ 21018572 (-) True G335868
XM_034297871.1 mRNA downstream 8747 20376679 ~ 20437831 (-) False tnikb
XM_026938130.2 mRNA downstream 8748 20376679 ~ 20437830 (-) False tnikb
XM_026938131.2 mRNA downstream 8748 20376679 ~ 20437830 (-) False tnikb
XM_026938129.2 mRNA downstream 8748 20376679 ~ 20437830 (-) True tnikb
XM_026938133.2 mRNA downstream 8750 20376679 ~ 20437828 (-) False tnikb
XM_034298257.1 mRNA upstream 8944 20497088 ~ 20557959 (-) True fndc3bb
XM_034298046.1 mRNA upstream 71946 20560090 ~ 20591616 (-) False stag1b
XM_034298044.1 mRNA upstream 71946 20560090 ~ 20591616 (-) False stag1b
XM_034298045.1 mRNA upstream 71946 20560090 ~ 20591616 (-) False stag1b
XM_034298043.1 mRNA upstream 71946 20560090 ~ 20591615 (-) True stag1b
TU397560 other downstream 198117 20246566 ~ 20248461 (-) False otos
TU397559 other downstream 200300 20242520 ~ 20246278 (-) False cops9
TU397303 other downstream 264166 20179412 ~ 20182412 (-) True G335523
TU396884 other downstream 842885 19600727 ~ 19603693 (-) True G335165
TU396861 other downstream 867658 19576108 ~ 19578920 (-) False nup58
TU397621 other upstream 42478 20530622 ~ 20557948 (-) False fndc3bb
TU397639 other upstream 122088 20610232 ~ 20612309 (-) True G335788

Expression Profile