RNA id: XM_026938072.2


Basic Information

Item Value
RNA id XM_026938072.2
length 2481
RNA type mRNA
GC content 0.46
exon number 9
gene id usp12a
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17483693 ~ 17492318 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACACAGCCCGCGGTTAGGCTCTGCGATCGGTCCTGACTGGGGACTCGTTTTCGCCTCCGCGCGGTGATTGGGTGGAAGATGGCGCTGGCCGAATGGAAATCCTAATGACAGTTTCCAAATTTGCCTCTTTTTGTACCATGGGCGCCAATGCCTCCGCTTTGGAGAAAGAAATTGGCTCGGAGCAGTTCCCTGTCAATGAGCACTACTTCGGACTGGTTAACTTCGGGAACACCTGCTACTGCAACTCGGTGCTCCAGGCTCTGTACTTCTGCCGGCCGTTTCGGGAGAAGATCCTGGCCTACAGGAGTCAGCCCCGGCGCAAGGAGAACCTGCTCACCTGCCTGGCCGACCTGTTCCACAGCATCGCCAACCAGAAGAGGAAGGTGGGCGTCATCCCTCCGAAGAAATTCATCACACGGCTGCGCAAAGAGAACGAGCTCTTTGATAACTACATGCAGCAGGATGCACACGAGTTCCTCAACTACCTGCTGAACACTATAGCCGACCTGctgcaggaggagaagaagCAGGACAAGCAGAATGGCAAACTGGCCAACGGCACGCTCGATTCACAGAAGAGTAACAGCACTCCTCCGTCCAGCACATGGGTACACGAGATCTTCCAGGGCACGCTGACCAACGAGACGCGCTGCCTCACCTGCGAGACGatAAGCAGCAAGGATGAGGACTTCTTGGATTTGTCTGTGGACGTTGAGCAGAACACTTCAATCACACACTgcctcagGGGCTTCAGTAATACAGAGACCCTGTGTAGTGAATATAAATACTACTGTGAGGAATGTAGGAGTAAACAGGAGGCACACAAAAGGATGAGGGTGAAGAAGCTGCCCATGATTTTAGCCCTGCACCTGAAGAGATTTAAATACATGGAGCAGCTCCAGCGCTACACTAAGCTAAGCTACCGCGTGGTCTTCCCTTTGGAGCTCCGCCTCTTCAACACGTCCGGAGACGCGACCAATCCCGAAAGGCTTTACGACCTCGTCGCCGtggtggtgcattgtgggagCGGGCCCAATCGCGGACACTACATCGCTATCGTCAAGAGTCACGACTTCTGGCTACTTTTCGATGATGACATCGTAGAgAAAATCGACGCCCAGGCGATAGAGGAGTTCTACGGACTTACCTCGGAAATCTCCAAGAACTCTGAGTCAGGCTACATCCTGTTCTACCAATCCAGAGACTGAGATTGTTCAGCACAGCGGCCCCTCGTGGACCCCTGCGGAACGTGCCGGCCTGCGTTTCCGAGTCCTGCTGCGTCCCACCCTGAGCAGGCTGGATCAGATCGCGCTGACCCCCTGACCCTTGACCCCAGCATTCCCCCCGCGGCAGTCCGGATGTGATGCAGTTACAGCGTTGTGTGTACGTCGTGAGAATGTTTAATCGCACTGGCTGAAATGTGTTCAATGTACTCGGCTCTGTGATACTGACAGTCCTGACATGCTGCAACCTTTATAAGCCTGAGTTTCTGACCAAAGGCTTGTGCATGGGAAAATAGGGGGCGTGTCCCGAACAGAGGGGAGGGGCTATAAACTGAACATATGGGGCTATTTGTGGGTTTATGTATTTCTACCTTGTACATAGTGgtatttgtataaatattatgaaattataataatattaattactgATATAGGTGAAAAAGATTGAAACATTGAAAATATGTATAACACTATGGTGCACTTTTGATACCGTTTTGTAGGTGTTTGGCAGGTTTGTGTGAGGGTTTGCTTGAGACAGCCTGTTGTGaaataattttctgttttaaagaaaaagaaataaagtgtaTAGATCGAGTGTAGATGAAGATAAATGTGAGCGTTTTATTGGATTCCATTTAACCCGGTGAAAtcagatttaaacaaaaatatcacatttacacTATTAGTAAAACGTTTGGTGTCTGACGTTTGCGTCTTTAGTTTTGCATATAAAAAGAAGCAGTCACAGATTTGCTGAATCTATCTGTGAGTATGAACAAATCCTCACTGTGTAGTCACtggttttttaattatttatttattttaactttagtGCAGTTTAGTATCACTCTGTCTCCCAAAATGACACCAGGAAGCAGGAAGTTATGCGAATAATAACATAGTTCCTCTTTGAGCTTGTAGAAATATCTATAGGAAAGATGTAGGGTGATAGTCGAGTGCAAAAATTTGTACACCAAAGACAAAATTAAGAAGAGTAGAAATTCTTGTCTTTCATGGATGTATCTTCATTatcacaaaaacacataaatgaaATCAGTATCTTTGTTTCTGAATGTGTTGAATGTTCTCTAGATGTCTTTTGAAACTGTTTTTGGTTGATTTTATGTTGGAGATTGTTGTTGCAGGATTCATGCACATCACATTTTCAGCTTGGtggatttctcttttttttttaataaataggtTAATtcttgttctgttttatttaaaaaaaaaaaaaaaaaaaaaaaaagacag

Function

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K11842 USP12_46; ubiquitin carboxyl-terminal hydrolase 12/46

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395063 lncRNA upstream 36650 17446185 ~ 17447043 (+) True G333582
TU395018 lncRNA upstream 120618 17362871 ~ 17363075 (+) True G333548
TU394762 lncRNA upstream 297018 17186129 ~ 17186675 (+) True G333360
TU394629 lncRNA upstream 585838 16893006 ~ 16897855 (+) True G333244
XR_003404172.2 lncRNA upstream 593532 16888937 ~ 16890161 (+) True LOC113541357
TU395113 lncRNA downstream 48319 17540637 ~ 17541761 (+) False rnf6
TU395303 lncRNA downstream 175318 17667636 ~ 17667844 (+) True G333787
TU395307 lncRNA downstream 178098 17670416 ~ 17670625 (+) True G333791
TU395294 lncRNA downstream 215404 17707722 ~ 17712380 (+) True G333779
TU395313 lncRNA downstream 249083 17741401 ~ 17745040 (+) False G333795
XM_026937820.2 mRNA upstream 17241 17450723 ~ 17466452 (+) False lnx2a
XM_026937819.2 mRNA upstream 17241 17452164 ~ 17466452 (+) True lnx2a
XM_026938140.2 mRNA upstream 48868 17432046 ~ 17434825 (+) True urad
XM_026938141.2 mRNA upstream 48868 17432784 ~ 17434825 (+) False urad
XM_026938210.2 mRNA upstream 93054 17378301 ~ 17390639 (+) True ccdc191
XM_034298075.1 mRNA downstream 3759 17496077 ~ 17503703 (+) True gpr12
XM_026938240.2 mRNA downstream 43626 17535944 ~ 17542387 (+) False rnf6
XM_034298078.1 mRNA downstream 43898 17536216 ~ 17542387 (+) True rnf6
XM_034298181.1 mRNA downstream 51505 17543823 ~ 17605193 (+) True atp8a2
XM_034298182.1 mRNA downstream 51506 17543824 ~ 17605193 (+) False atp8a2
TU394792 other upstream 181689 17287160 ~ 17302004 (+) False G333388
TU394795 other upstream 181996 17292031 ~ 17301697 (+) False G333388
TU394798 other upstream 183682 17285082 ~ 17300011 (+) True G333388
TU394801 other upstream 183682 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 188639 17287160 ~ 17295054 (+) False G333388
TU395491 other downstream 494444 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 823038 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 823040 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 823042 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 823365 18315683 ~ 18323295 (+) True mtfr1

Expression Profile