RNA id: XM_026938080.2


Basic Information

Item Value
RNA id XM_026938080.2
length 1637
RNA type mRNA
GC content 0.51
exon number 14
gene id hgd
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19395899 ~ 19411215 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctctctctctctctctctctctctctggagctGATGTGAGAGGTGGGACAAAGTCTCAGGCTGTTAAAAAACTACCTCCAGTTTCTTTGTAAAGTTCAGCgacttttcttttaaacaagCGCGCGCCATGGCCGGGCTGAAGTACCTGAGCGGTTTTGGCAATGAGTTCGCCTCAGAGGATCCTCGCTGTCCTGGGGCTCTACCTGAGGGCCAGaacagTCCACAGGTGTGTCCGTACGGACTGTATGCTGAGCAGCTCTCAGGCTCGGCCTTCACTTGCCCACGAGGAACCAATAAGAGAAGctGGCTGTACCGGATACTACCTTCTGTTCAGCACAAACCCTTCTCTCCCATAACCTGTGGAAACCTCACTGATGACTGGAATGAAGTGGAACCTGATCCCAACCAGcttcgGTGGAAGCCGTTTATCATCACTAAAGCTCTGGAGAAGAAGGTGGATTTTGTAGAGggTCTGCACACAATCTGTGGTGCTGGAGACTCGAAATCTCGCAATGGGATCGCCATCCACATATACACCTGCAACACGTCGATGATTGACAGGTGCTTCCAGAACTCGGATGGTGATTTCCTCATTGTGCCACAACAAGGTGAAATCTTGGTCACCACCGAGTTCGGGAAGATGATGGTGGAGCCGAATGAGATCTGCGTCATTCAGCACGGGATGCGTTTCAGCGTGGACGTGTTTGGAGAGACCAGAGGTTATATCCTGGAGGTCTATGGCGCTCACTTCGAGCTGCCGGACCTCGGACCCATCGGAGCTAATGGACTCGCTAATCCTCGAGACTTCCTGACTCCTGTGGCTTGGTTTGAAGATCGCACCGTAGCCAGCGGTtacaccatcatcaacaagtacCAGGGGAAGCTCTTCTCCTGTCAGCAGGACTTTTCACCTTTTAACGTGGTGGCGTGGCACGGAAACTACGCTCCCTACAAATACAACCTGGAGAACTTCATGGTCATCAACTGCGTAGCGTTCGATCACGCTGATCCGTCCATTTTTACCGTCCTGACGGCCAAATCCACTCGGCCCGGTGTCGCCATTGCTGATTTTGTCATCTTTCCACCTCGCTGGGGAGTCGCGGATCACACCTTCAGACCTCCGTACTATCACAggaACTGCATGAGCGAGTTCATGGGATTAATCAAGGGTCGCTATGAGGCAAAGGAAGAAGGTTTCCAGTGCGGAGGAGCGAGTCTGCACAGCATGATGACCCCTCACGGCCCCGACGCTGACTGCTTTGAGAAGAACAGCACGGCTAAGCTCAAACCCGAGAGAGTCGCTGAGGGAAACAtgGCCTTCATGTTCGAGTCGTCCTTCAGCATGGCGGTCACCAAGTGGGGCCTTGAGACGTGCCAGCGTCTGGACAAGAGCTACTACAAATGCTGGGAGCCTCTGAAGAAACATTTTAACCCAAACTGGAAACCTGGCAGCATGTAAACAGGCCACGGTGCAGAGCGCAAGAAGCCTTAATTATCCCCGTTAATTATCCATGAGTCATTATCCTCTTcctatatatggatatataccAACTGCAGTGGCAAAGTATTACAGCATAGACATGCGGAGTTAAAGCTGAAACCCTGAAAGTTgcaataaaatcaaatttaatcACGAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006559 L-phenylalanine catabolic process biological_process
GO:0006570 tyrosine metabolic process biological_process
GO:0004411 homogentisate 1,2-dioxygenase activity molecular_function

KEGG:

id description
K00451 HGD, hmgA; homogentisate 1,2-dioxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396808 lncRNA downstream 35161 19317859 ~ 19360738 (-) True G335099
XR_004576971.1 lncRNA downstream 320633 19070338 ~ 19075266 (-) True LOC117595792
TU396268 lncRNA downstream 380115 19005522 ~ 19015784 (-) False pkia
TU396248 lncRNA downstream 434846 18960847 ~ 18961053 (-) True G334602
TU396220 lncRNA downstream 463059 18932629 ~ 18932840 (-) True G334574
XR_004576978.1 lncRNA upstream 3013 19414228 ~ 19416072 (-) True LOC117595800
TU396813 lncRNA upstream 95873 19507088 ~ 19518309 (-) False pdk3a
TU396859 lncRNA upstream 139825 19551040 ~ 19551530 (-) True G335149
TU396860 lncRNA upstream 149763 19560978 ~ 19564462 (-) True G335150
TU396959 lncRNA upstream 361638 19772853 ~ 19773057 (-) True G335230
XM_034297940.1 mRNA downstream 4366 19384922 ~ 19391533 (-) False ropn1l
XM_026937920.2 mRNA downstream 4367 19384926 ~ 19391532 (-) False ropn1l
XM_026937921.2 mRNA downstream 4371 19382488 ~ 19391528 (-) True ropn1l
XM_026937911.2 mRNA downstream 18026 19363399 ~ 19377873 (-) True ankrd33ba
XM_026938260.2 mRNA downstream 380044 19005499 ~ 19015855 (-) False pkia
XM_034298246.1 mRNA upstream 28548 19439763 ~ 19489383 (-) False pola1
XM_034298245.1 mRNA upstream 28548 19439763 ~ 19489383 (-) True pola1
XM_034298247.1 mRNA upstream 78103 19489318 ~ 19496957 (-) True LOC113541094
XM_034298016.1 mRNA upstream 97052 19508267 ~ 19521331 (-) True pdk3a
XM_026937828.2 mRNA upstream 111400 19522615 ~ 19531363 (-) True slc51a
TU395862 other downstream 875694 18444658 ~ 18520205 (-) False mybl1
TU395863 other downstream 952904 18442355 ~ 18442995 (-) False mybl1
trnay-gua_4 other downstream 1016165 18379649 ~ 18379734 (-) True trnay-gua_4
trnay-gua_3 other downstream 1016778 18379036 ~ 18379121 (-) True trnay-gua_3
TU395529 other downstream 1469064 17925075 ~ 17926835 (-) False zmp:0000000991
TU396861 other upstream 164893 19576108 ~ 19578920 (-) False nup58
TU396884 other upstream 189512 19600727 ~ 19603693 (-) True G335165
TU397303 other upstream 768197 20179412 ~ 20182412 (-) True G335523
TU397559 other upstream 831305 20242520 ~ 20246278 (-) False cops9
TU397560 other upstream 835351 20246566 ~ 20248461 (-) False otos

Expression Profile