RNA id: XM_026938082.2


Basic Information

Item Value
RNA id XM_026938082.2
length 2440
RNA type mRNA
GC content 0.47
exon number 15
gene id dcaf11
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15111698 ~ 15120918 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGAGCAATGTTCTGCGTTTCGTAAACAACATGGCGCGTCATGGACACAGTTGGACTTGAGACGTTGCAGTTGACAGCGGAAATTTTACGGAGATAACAAAAATACTCACAGTCATTCGACATAAAGCAAATGTTTCGTCATTAACTTTGGACTACAGAGGAAAAGCAGATAAGCGACAGAAGTGTGAAAAGGTGCTCAGTCTATGGGCTCCCAGTCCAGTTCTGGCATGTCCGGTCGCGGCTCAAGTGGAAACCCGGACCAGTCAGAATCAGAATCGAACCAAAACCAGGCTTCGACCCCGAGGAGCCGCAGGGGAACCGAGAGAGCATCGGCGTCTGAGGAGGACGTTGATCTAGCACAAGTACTGGCGTACCTACTGAGGAGGGGCCAGGTGAGGCTGGTCCATGGCAGCGGGGCGACGGGGTTGCAGCTCGTCCAGTCTATCTCAGACTCGGATGAGGACAGTGATGGAGCATGGGAGGGACGGCTAGGACATCGCTATGATCCTCCTGTGGATTCACACCCAGACACTCAGGAGCTGGACCGCAGCGAGATCCGCACTCAGATCCTATTAGCCACAGCGTCCTCACACCTAAAGAACAAGCACAGCTTCACACACATGCTTAATCAGCGGGAGCAGGGTCGCTGTCGCGGCTCCAGTTTCTCTCATGGGGAATGCAGCCGTATTCGCTCACAttTCCTGCCCAACTATGTGGTCCACAAAGACACTTATCAGCAGAAAGCGTTTTGTGGCGTGTACAGCGATGATGGaaacctctttctctctgcatgcCAAGatcagaATATTCGGCTGTATGACACCAGCTGGGGCAGATTCCACCTGAAGCGCACTGTGAAGGCCCGAGACGTGGGCTGGAGTGTGTTAGACGTGTGTTTCACACCTGATTCACGCTCCGTTCTCTACTCCAGCTGGTCTGATTacaTCCATGTTTGCAGtatagatggagagagtgaaaCACACACCGCTCTGGACCTCAAtccaGAGGAAAGAAGGTTCTGCGTGTTCTCTCTCGCAGCATCCACAGACAGCAGAGAGGTTCTGGGCGGAGCAAACGATGGCTGTCTGTATGTATTTGATCGTGAGCTGAACAAAAGAACTTTGAAAattgATGCTCATGAGGACGACGTGAACGCTGTGGCGTTTGCCGATGTTTCGTCTCAGCTGCTGTTCTCAGGCAGTGATGATGCGCTGTGTAAAGTGTGGGACAGACGCACACTGAGAGAACACTCACCTCAACCAGTAGGGGTGTTGGCAGGACACAGAGACGGAATCACCTTCATACACAGCAAGGGTGATGCCCGGTATCTGATCAGTAATTCAAAGGATCAGACAATTAAGCTATGGGATGTAAGGAAGTTTTCTCCTAAGGAAGGCCTCGCTGCATCACGGCTCGCCGTCACACAGCAGAACTGGGACTATCGCTGGCAGCAGGTCCCACAGAGAGctTTGAAGAGGCACAAACTGACAGGTGATACGTCGGTGATGACGTATCGAGGTCACGGCGTTCTTCACACGCTCATCCGCTGCCGTTTCTCCCCCGAGTTCAGCACAGGACAGAAGTTCATCTACAGCGGCTGCTCAACTGGGAAAATCATCATTTATGATGTTCTGACGGGCCGTGTTGTGTCCAGACTGGCGGGTCACGAGGCATGTGTGAGAGACGTCAGCTGGCACCCATACCAGGATAACATCATCAGCAGCTCTTGGGATGGTGCAATTCGCTTGTGGgagcacagacacactcacctgctggacaaagagagagaatgagtgagtggaGGCCAGAAAAGAAGACAGAGTAGAAGTGAACTGGCctagagttgtgtgtgtgattctgaaATTATATAGGTTATGTTTTTCTGCTGgccaaaaagaataaaactgcacaaaaaaaccAGGGCGACACACAAGCTCAGTAATGTTTTTTAAGCGCACTATAGATCTTTGTTCCTTATTCTGAAGCTCAGAGTTttcagatactgtttaaacatgCTCTGATGGTAAAGTTAGACACAGCAACATAATTTACATCACACAGTAATAAtagtgataaaaataataatgatgataatgatattgCTTTTTGTCTCCATGTAAGAGAacacagcttttaaaaaaaaaaatcaaatgatgTTAAAACTGacagctgtgttaaagctgaaTAATATAAAAGATTGTAATAGTGTTAATGGTGATTTAAAAAGGGAAATGTTATTTTGGAGTGTAATGTAAAAGAGTGAAgagtagaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtttgggaatgCGTGTCTATATATATGTCACTGAAATTTGTTCCTGCAGCTCTCCAGAGTGCGTTTGTAAATTATTAACGAAGTTAATTAAAATCCTTTTTCAATCTTGA

Function

GO: NA

KEGG:

id description
K11801 DCAF11; DDB1- and CUL4-associated factor 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393373 lncRNA downstream 314500 14714217 ~ 14797198 (-) True G332196
TU393330 lncRNA downstream 476772 14544032 ~ 14634926 (-) True G332164
TU393312 lncRNA downstream 546994 14537252 ~ 14564704 (-) True G332147
TU393340 lncRNA downstream 589083 14513735 ~ 14522615 (-) True G332169
TU393844 lncRNA upstream 224354 15345272 ~ 15397132 (-) True G332580
TU393913 lncRNA upstream 445269 15566187 ~ 15566646 (-) True G332637
TU393941 lncRNA upstream 494582 15615500 ~ 15618841 (-) False sec61g
TU393956 lncRNA upstream 499588 15620506 ~ 15620717 (-) True G332676
TU393962 lncRNA upstream 509305 15630223 ~ 15630444 (-) True G332682
XM_026937904.2 mRNA downstream 45933 14962837 ~ 15065765 (-) True LOC113541115
XM_034297848.1 mRNA downstream 157019 14946013 ~ 14954679 (-) False terf1
XM_034297847.1 mRNA downstream 157020 14945659 ~ 14954678 (-) False terf1
XM_026937821.2 mRNA downstream 157022 14945659 ~ 14954676 (-) True terf1
XM_026937894.2 mRNA downstream 174294 14932995 ~ 14937404 (-) False LOC113541102
XM_026938192.2 mRNA upstream 108298 15229216 ~ 15245025 (-) True rdh10a
XM_034298262.1 mRNA upstream 146440 15267358 ~ 15269264 (-) True LOC117595804
XM_034297841.1 mRNA upstream 152208 15273126 ~ 15275076 (-) True LOC117595763
XM_026938248.2 mRNA upstream 155665 15276583 ~ 15284155 (-) True LOC113541332
XM_034297961.1 mRNA upstream 164590 15285508 ~ 15288765 (-) True LOC117595668
TU393587 other downstream 45888 14965813 ~ 15065810 (-) False LOC113541115
XR_003404167.2 other downstream 174294 14936886 ~ 14937404 (-) False LOC113541102
TU392350 other downstream 2433765 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 2433765 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 4028547 11082268 ~ 11083151 (-) True G330379
XR_004576965.1 other upstream 1709778 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 1709778 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 1995180 17116098 ~ 17139685 (-) False zbtb47b
XR_004576994.1 other upstream 2064606 17185524 ~ 17239106 (-) False vipr1b
TU395488 other upstream 2786976 17907894 ~ 17908812 (-) False LOC113541127

Expression Profile