RNA id: XM_026938084.2


Basic Information

Item Value
RNA id XM_026938084.2
length 2294
RNA type mRNA
GC content 0.42
exon number 17
gene id sgk3
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18453107 ~ 18467245 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTCTAACTATCTGCTCGCAGAGTTcagtgtgaaagtgtcagaAGTGTAGAAATGTAAAGGCATAGTGAAATGTGTTCATTATTAAACATGTGCTCGTTTTTGAGTTCCTTTAGGAACATTAGCTCAAGAATGGATTGCCAGTTGTGTCTTTGAGCCGTGCTCCAGAACGGAGCACTAAGGAATCGCTGTTACACAGAGCCGCCTTCACTGAGCCCGGTCAGGAAGAACGATCAGGATGGACGCGCATTCAAGTTGCCCTAATGTCAGCATTCCCTGCTACAATGAGCAGAGAGACAAGAAAAAACGTTATACTGTTTACAAAGTGATGGTCAGAGTTGGAAGACATGAGTGGTTTGTCTTCAGGAGATATGCAGAATTTGATAAACTGTATAATACATTGAGAAAACAGTATCCTGCTTTGAATTTGAAGATACCTGCTAAGAGAATATTTGGTGACAACTTTGACCCAGAGTTTATAAAGCAAAGAAGAACGGGGTTACATGGGTTCATTCAGAAAATCGTGTCCCATCCACAGCTCAGCAATCACCCTGACGTTCGAGACTTTCTCCAAATGGACAAATCCCAAAATGTCTCCGATGCTTCAGATGATGAATATGAGAAGAACAACTCTGCCTCCAGAGATATTAACCTGGGACCATCTGCAAACCCTCAGGCAAAACCCACTGACTTCGACTTTCTGAAAGTCATCGGTAAAGGGAGCTTTGGAAagGTTCTCCTTGCAAAGAGGAAACGAGATGGGAAGTGTTATGCAATCAAAGTCCTTcagaaaaaagtcattttaaaaaggaGGGAGcaaaaacacaTCATGGCCGAGCGCAATGTGCTGCTAAAAAACGTGAAGCACCCTTTTCTAGTCGGATTGCACTATTCCTTCCAGACAACGGATAAGTTATACTTTGTCCTGGATTTTGTCAACGGTGGAGAACTTTTCTTTCACCTTCAAAAAGAGCGAACCTTTCCGGAGCCCAGGGCGAGGTTCTACATCGCTGAGATGGCGAGCGCACTGGGCTATCTACACTCTCTCAACATTGTTTACAGggATTTGAAACCGGAAAATATCCTGTTGGACTTCGAAGGACACGTAGTCTTGACGGATTTTGGACTGTGCAAAGAGGGGATCTCTCAAGCAGACACGACCACCACATTTTGCGGGACACCTGAGtaTCTGGCTCCAGAGGTCTTGAGAAAACAGCCCTATGACAACACTGTGGATTGGTGGTGTCTCGGTTCTGTATTATATGAGATGCTCTATGGcctgCCTCCATTCTACAGTAGGGACACGCATGAAATGTATGATAACATCCTGCATAAGGAGCTGCCAATGCGCCTAGGGGCATCCACGGTCGCCTGGTCCATTTTACAGGCTCTTCTGGAGAAAGACAACACCAGGAGGCTGGGATACAAAGACGACTTTAATGAAGTTAAAAGCCATGTATTTTTTGCTTCCATTAACTGGGACGACCTTGTGCAGAAAAGGATCCCACCTCCATTTAATCCCAGTGTGGAGTCCCAGTATGACTTATCAAATTTTGATCCTGAGTTCACAGAAGAAACCGTACCCAACTCAGTGTGCATCTGCAAGGATAACTCCATTGTCAACGCCAGTGTCATGGAGGCTGACGATGCTTTTCTGGGCTTTTCCTATGCTCCACCTTCAGATGACTCCTTCCTGTAAAATTTCTTAAGAACTGTACTGCAGCTATTTTATGCTACCAGAAATGGCTTGGGTGTGCTCTTTCATTCAGAAAGCGACGAAAATGCAAAGACCAAACCAAGGCATTGTACACTTGATAAAAGGACAGATATCTTGTGATGCGGggttttccaattttttttattttttaacctcTCAACAacagatttatattttgtattgtataaaTGCGTATACCTGAGATACTGTTATAGCTCAGGTATTCTATTTTCTCTTCCCTAGATTATTTTCTACAGTGGTAGTTGTTGTGTCAGGGAAGCCGGGTAATGAATTTTGAAACCAGATATATACATTCCACATTTAAATACCCCCTAATGAACTTTATTGTTCGTGGCACTTGTGATTGTTTGGTTTGTCCTCCTTTGAAAAATGTCTTAGTAGGATAGTTTAGAaggcctttttttccccagagaaTTTGcaagatatcttttttttttcttttcttttcttttttttttaaccaaagataatgtgttttgtaataacataaaaatggaaaactgAAGTAAATTGTGTAACTGTAATTTAAATTAGTAAACTGTGGATGTATGAACCAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007154 cell communication biological_process
GO:0005524 ATP binding molecular_function
GO:0035091 phosphatidylinositol binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395831 lncRNA upstream 12730 18440255 ~ 18440656 (+) True G334211
TU395830 lncRNA upstream 13940 18439149 ~ 18439446 (+) True G334210
TU395829 lncRNA upstream 15980 18435721 ~ 18437406 (+) True G334209
TU395716 lncRNA upstream 128501 18296643 ~ 18324885 (+) True G334120
TU395842 lncRNA downstream 7439 18474684 ~ 18478739 (+) False mcmdc2
TU395840 lncRNA downstream 33538 18500783 ~ 18530907 (+) True G334219
TU395839 lncRNA downstream 34263 18501508 ~ 18530907 (+) False G334219
TU395933 lncRNA downstream 76117 18543362 ~ 18581969 (+) False LOC113541128
XR_003404150.2 lncRNA downstream 76145 18543390 ~ 18681823 (+) False LOC113541128
XM_034298263.1 mRNA upstream 21236 18396227 ~ 18432150 (+) True si:dkey-97a13.12
XM_026937814.2 mRNA upstream 21236 18410636 ~ 18432150 (+) False si:dkey-97a13.12
XM_026937813.2 mRNA upstream 29826 18420986 ~ 18423560 (+) True rrs1
XM_026938222.2 mRNA upstream 62521 18380291 ~ 18390865 (+) True trim55b
XM_026938223.2 mRNA upstream 62521 18380445 ~ 18390865 (+) False trim55b
XM_034298210.1 mRNA downstream 633 18467878 ~ 18474659 (+) False mcmdc2
XM_034298211.1 mRNA downstream 777 18468022 ~ 18486009 (+) True mcmdc2
XM_034298208.1 mRNA downstream 777 18468022 ~ 18474657 (+) False mcmdc2
XM_034298209.1 mRNA downstream 781 18468026 ~ 18474659 (+) False mcmdc2
XM_026938095.2 mRNA downstream 36573 18503818 ~ 18523294 (+) True pign
trnaa-agc_16 other upstream 73372 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 74012 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576962.1 other upstream 130091 18315358 ~ 18323295 (+) False mtfr1
TU396015 other downstream 225904 18693149 ~ 18717953 (+) True G334373
TU396386 other downstream 871961 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 871961 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 871961 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 871961 19339206 ~ 19360737 (+) False dap

Expression Profile