RNA id: XM_026938086.2


Basic Information

Item Value
RNA id XM_026938086.2
length 2299
RNA type mRNA
GC content 0.49
exon number 2
gene id hs6st1b
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12428457 ~ 12499046 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaaaaaaaaaaaaaaaaaagtgtgagtgTTTAATGTGCGCGCGCGCGCCGCGGTCTGCTGAGCCGCTCCGGTCCCGTTGATCTATGGAGGGCGCGAGCACCGAGCCAAATCCGCTACCCGAGACCCCGCTGTGTGAGACATGGTGACAGATGAACATCGCGGGAAGGACCATGGCTGAGCGGGCCAGCAAATTCGTGCTGATCGTCGTTGGCTCCGTGTTCTTCATGCTCATTCTGTACCAGTACGTAGCGCCCGGTGCGATCAACTTCGGCTCTCCGGCGCATGGCTACCTCACCGAGGAGGACATGACCATCTTCCCCACGCCGGATCCGCACTATGTGAAAAAGTACTACTTCCCGGTGAGGGACTTGGAGCGCAGCGTGGACTTCGAGATCAAGGGCGAGGACGTGATCGTGTTCCTGCACATCCAGAAGACAGGCGGCACTACATTCGGACGGCATCTGGTCCAAAACGTGCGGCTGGAGGTGCCGTGCGACTGCAGGCCGGGCCAGAAAAAGTGCACGTGCTACCGACCGAACCGCAAGGAGACGTGGCTCTTCTCGCGCTTCTCTACCGGCTGGAGCTGCGGCTTGCACGCGGACTGGACCGAGCTGACCAACTGCGTGCCCGGAGTCCTCAACAGGAAGGAGAGCAAGACAAAGAAACTGAGGAAGTTCTACTATATCACTCTTCTTCGGGACCCAGTGTCAAGATATCTAAGTGAATGGCGCCATGTGCAACGAGGTGCCACATGGAAGACGTCACTGCACATGTGTGACGGCCGCACGCCCACACCCGAGGAGCTACCCACCTGTTACGATGGCGCGGACTGGTCAGGCTGCACCCTCCAGCAGTTCATGGAGTGCCCATACAACCTGGCCAACAACCGGCAGGTGCGCATGTTGGCTGATCTGAGTCTGGTAGGTTGCTACAATGCATCCACACTGCCTGAGAAGCAGCGAGCCCGTCTCCTTCTCGAGTCAGCTAAGAAGAACCTGCGTGACATGGCCTTCTTCGGACTCACGGAGTTTCAGCGCAAAACACAGTACCTATTTGAGCGCACCTTCCGTCTCCGCTTCATCCGGCCGTTTGTACAGTACAATAGTACGCGTGCTGCTGGTGTTGACCTGGACGAGAGCACCGTGCAACGCATTGAGGAGCTCAATGAGCTTGACATGCAACTCTATGACTACGCAAAAGACCTGTTCCTTCAGAGGTACCAGTACACTCACATGCTGGAGAGGCGTGAGCAAAGAATGATGCTCCGAAATAGAGTCTCTTTCCACAGCCTGGCACGGGAGGAGGGTGCAGGGGGAGAGGGCACTGCTCGGCTGCCCACTGAGGACTACATGAACCAGATTGTTAGTGGATGGTAGCCCAGGAGATCtctctttaaaaagaaagagagacacaaagacaaATAATGGGTGGAGAATCCATCTTTTCTCTAACTTATGGAGAAATAAAGTGGTTATCATGGACTCTTTTCCCCAGGAATCTTTAAAGAGTAAGATGCACAGGAAAACAGGCAAAGATAGTGAGTGGCGGACGTGGCCTTTTCCGAGAGAAGGGATCATTAtgggcattctctctctcttttccccagGAATCTTTAAAGAGAGAGGTGCATAATGAGAGAACTGAGAAATGGTGGGTGaaagaaccatttctatttCAGCTCATGTAGAAAGATAGGGATCATTATGGACCCTTTCTCTCGTTTCTCCCAGAAATCTTTGAAAAGACATGCAGGGGCAGAGAAATGGCAAAGATCATGGGTAGAGGAGTCATCATAGACAGAGAGCGATCATTGCAAGCCCTCGGTCATTTCTCCACAAATAAGGTGTAGTTTGGGCCAGACCTACAAGAGATAGTAGTTATTGAGGTGACTAGGGATTTAGAGTGCACCTTTCCGGATGGGTGAGCACATATCCCCATCCCCTCCATAAAGCCCAGGCCTAAATGACAAATTGTAAATGCTTAATACAATTCAACCAGTAAAGCGTTGTTTCAATGAGCTGCAACAAAATTCTACAAAGCTTAGTTTTGTATAcgaacgaaaaaaaaaatgtgaataaaatcacTTGTCTTAGAAAAGTCATCCAAATATTGGGAATATTCAGAATGTTTTATATTCTGTGTATAAATCTTaagtttctcctttttttttatggtaAACTGATGTGAAGTGCAGAGACTGGAAATTTCCACATGAGATTATTACTAACAGACGCTGTGATTCAGTTTGTTTTAAGAGAgatatatgttaatatataatGCAGACATGGCCTTGTTT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K02514 HS6ST1; heparan sulfate 6-O-sulfotransferase HS6ST1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392061 lncRNA upstream 155167 12211250 ~ 12273290 (+) True G331003
TU392027 lncRNA upstream 285592 12141943 ~ 12142865 (+) True G330976
TU392006 lncRNA upstream 394398 12024576 ~ 12034059 (+) True G330962
TU391950 lncRNA upstream 482219 11944030 ~ 11946238 (+) True G330911
TU391946 lncRNA upstream 532566 11895666 ~ 11895891 (+) True G330908
TU392342 lncRNA downstream 211473 12710519 ~ 12712678 (+) False G331263
TU392357 lncRNA downstream 233763 12732809 ~ 12733703 (+) True G331277
TU392360 lncRNA downstream 242071 12741117 ~ 12741678 (+) True G331280
XR_003404159.2 lncRNA downstream 298315 12797361 ~ 12802125 (+) True LOC113541232
TU392425 lncRNA downstream 545269 13044315 ~ 13049452 (+) True G331342
XM_026938147.2 mRNA upstream 194274 12181785 ~ 12234183 (+) True bcl2a
XM_026938259.2 mRNA upstream 248836 12162455 ~ 12179621 (+) True LOC113541340
XM_026937798.2 mRNA upstream 271673 12062334 ~ 12156784 (+) False prkag2a
XM_026938277.2 mRNA downstream 207893 12706939 ~ 12708003 (+) True LOC113541349
XM_034298168.1 mRNA downstream 211580 12710626 ~ 12712651 (+) True ccl34b.4
XM_026938097.2 mRNA downstream 267514 12766560 ~ 13015109 (+) True LOC113541231
XM_026938128.2 mRNA downstream 522121 13021167 ~ 13042516 (+) True cul1b
XM_026937922.2 mRNA downstream 775614 13274660 ~ 13278025 (+) True skida1
XR_003404147.2 other upstream 271670 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 679898 11738158 ~ 11748559 (+) True ankha
XR_004576968.1 other upstream 1445242 10874209 ~ 10983215 (+) False acad11
TU392341 other downstream 207893 12706939 ~ 12712678 (+) True G331263
TU392569 other downstream 758848 13257894 ~ 13258416 (+) True G331476
trnat-agu_17 other downstream 886155 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 2752589 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 3067129 15566175 ~ 15566663 (+) True G332636

Expression Profile