RNA id: XM_026938091.2


Basic Information

Item Value
RNA id XM_026938091.2
length 5397
RNA type mRNA
GC content 0.53
exon number 22
gene id ctnnd2a
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19060889 ~ 19328125 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgagtgtgagagagagagagagagagagagagagctgggtTTGTGTGTGATGCAGGCTGGAAAGCCTCCGCCGCTCCGCTCTGTAGCTCTGCCTCCGTCGCGGTGATCCACGCTGCGCTCTCGCCCTTCCCACCGCGGACATCCGGCCACCTGATCcgtctccctccctccctccccggTGAGAGCAGCATCCTTCCTCTGGTGAACTGAGGACTTAGAGCGGAGGAGGAgaggacagagggagaaagcagaggagaggagaggagagcagaggagaggagaggagtgcGCCGTTTCCTTTGCTCCTCGTCTGGTTGAGAAATGCCAGTTCCAGATCAGCCTGCTGAATCCGAGAACGCCTCCACTGGGGACAGAACCGAATCCGAGGCCACTTCAGCCATCCTGGCATCAGTTAAAGAGCAGgAGCTGCAGTTTGAGAGACTGACTCGAGAGCTGGAGGCTGAGCGCCAAATCGTCGCCACCCAACTGGAGCGATGCAAACGGGGATCTGAGACCGGCAGCACCATGAGCAACATAAGTTCAACAGATGAACATCTTCGCTGGGATACTGAAGatggacagaaagacaTTGAGGATGAGCTGAACACCGGACTGGAGCTTGTGGACTCGTGCATCAGATCCCTGCAGGAGTCCGGAATTCTCGACCATCAGGAATACAGCACGAGCGAACGACCGAGTCTGCTCTCTCAGAGCTCGCTGCAGCTCGGCTCGAACTCCTCCGGATATCACAGCAGCCAGACGCCGGCTCTGAACGACGCCCAGGCTTCGGCATCACCTCAGCTGCAGCAGCCTGGAGGAGCCGTGCACAACTACAACCAGGTGACATCCAGCCGTGCAGCTCAACCCCAGAGCCATGGCCCTGAACCCCAACAGCCGTGTCCAGCTTCGGGAATCTACTACTCCAGCTCCACGTTGCCTGCTCCTCGTCTCAGCTCTCCCCTGAGCTCCATGCAGCCCTCTGGCACGGCCACCGGCTCGGCCACCAAGCTCCAGCGTCTGGGCTCGGCCTCGGACGCTCCCCCCTACGCCACCACCCAGCGGCTGcattcctcctcctcgtcctcctcacCCAAGCCCTCTCCTGCAAGGCTCGCCAAGTCCTACAGCAGCAGCTCCCCTATTAACGCTGTGGGAGCTGGGGGCACGGCCTCGAGTTCACCCATCCGCCTGGCATCGCCATCCAACAACGCCTCGCCGCTGCACCAGCAGCTCAGTGTGGGCAGCTACGCCACGCTCTCGCCCACCAAGAGGCTGGTGCACTCTTCAGAGCAGTACAAGATTTCGCACGAGCTGTACGCCACCGCTACGCTGCAGAGGCCCGGCAGTCTCGCCGGATCTCGGAGCTCATACAGCAGTCAGCATAGCCACACGGGTTCTGATCTGAGACCCCTGCAGTCTCCGGAGCACCACATCGAGCCCATCTATGAGGACCGGGTTTACCAGAAAGGTCCAATGAGGAGCCTGAGTCAGAGTCAAGCAGAACCCCCTGCTCCAGGACATACTGGCACCTACCGAACCAACACTGCCCCATCCTCCCCCGGTGTCGACTCCGTCCCCCTGCAGAGAACAGCGAGCCAGAATGCTGCCGGAACGTTCCCGCGTGGAGGCTACGCCGGCTACGTGGAGCCGTACCGCACGCTGCAGTACTGCTCATCTGTGGAGTCTCCCTACAGCAAATCGGGCCCCACTCTCCCTCCCGAGGGGACCCTGGCCCGCTCGCCCTCCATCGACAGCATCCAGAAGGACCCGAGgGAATTTGGTTGGCGAGACCCCGAGCTGCCTGAAGTCATCCAGATGTTGCAGCATCAGTTCCCCTCTGTTCAGTCCAATGCTGCTGCATACCTACAGCACCTGTGCTTCGGGGACAACAAGATTAAAGCAGAGATCCGGAGGCAGGGTGGTATCCCCTTGCTGGTGGACCTGCTGGATCATCGGATGGCGGAGGTGCACCGGAGCGCCTGCGGAGCTCTGAGGAACCTCGTCTATGGGAAAGCTAATGATGACAACAAGATTGCCCTGAAGAACTGTGGAGGAATCCCAGCGCTGGTGCGTCTGCTGAGGAAAACCTCAGACGTGGACATTCGGGAGCTGGTTACAGGTGTGTTATGGAACCTCTCGTCATGCGACGCCCTGAAGATGCCAATCATCCAGGATGCTCTGGCTGTCCTGACCAACACCGTGATCATCCCTCTGTCCGCCTGGGACGTCTCGCCGCATCAGGAGGACCGCAAGCTGCAGATGCACACGTCGCTCGTCCTGCGCAACGCCACCGGGTGCCTGAGGAACGTGAGCTCGGCCGGGGAGGAGgcgaggaggaggatgagggagTGCGAAGGTCTGACAGACGCTTTGCTTTTCGTCATCCAGACTGCACTGGGGAGCAGCGAGATTGATAGCAAGACCAtagaaaactgtgtgtgtatcttgaGGAACCTCTCGTACCGACTGGCGGCGGAAACTTCTCAGGGACAGCAGATGGGCACCGAAGAGCTAGACGGCCTTCTGTGCAGCGACTCCAACGGGAAGGACGGAGAGAGTTCAGGCTGCtgggggaagaagaagaagaaaaagaaggcgCTGGATCAGTGGGATGGCGTAGGTCCTCTCTCCGACACGGCCGAGCCTCCCAAAGGAATCCAGATGTTGTGGCATCCATCCATCGTGAAGCCGTACCTCTTGCTGCTCTCTGAGTGCTCGAACCCGGACACGCTGGAGGGAGCGGCCGGAGCGCTGCAGAACCTGGCTGCAGGGAGCTGGAAGTGGTCAGTCTACATCCGTGCAGCggtgagaaaagagaaaggacTGCCGATCCTTGTGGAGCTCTTGAGGATAGATAACGATCGTGTGGTGTGTGCGGTGGCTACAGCGTTACGAAACATGGCCTTAGACGTCAGAAATAAAGAGTTAATTGGGAAGTACGCGATGAGGGATCTGGTCCACCGCCTTCCCGGGAGCAGTAACTCCAGCGGCAGCAGCGGCGGCAGCACCACCAACAGCGCAACGAGCAAAACCATGTCGGACGACACGGTGACGGCGATCTGCTGCGCCCTGCATGAGGTCATCACCAAGAACATGGAGAACGCCAAGGCACTGCGAGACGCCGGCGGCATCGAGAAGCTCATCGGCATCGCCAGGAGCAAAGGAGACAAACATTCGCCCAAGGTGGTGAAAGCGGCATCTCAGGTCCTGAGCAGCATGTGGCAGTACAGAGATCTGCGCAGCCTTTACAAGAAGGACGGTTACTCACAGTATCACTTTATCGGCTCTGCTTCAAcgatagaaagagacagacaacgACCATACTCTTCCTCACGCACGCCTTCCATCTCTCCGGTCCGGACCTCTCCCAACAATCGTTCAGCAAGCGCCCCCGCCTCACCCAGAGAGATGATCAGCCTCAAGGAGAGGAAGACCGACTATGAGTCCACTGGAACCAATGCTAGTTTCCATGGAAACAAAGGAGAGCACGCATCCAGGAAAGACGCCACAGCAGTTCAAGTCTCGTGTGGAACCTCGACGCTGTTCCGCAACTCATATGCGACTCCAAGCGAAGAGATCCCGACCCATCCAGCTCCACAGGAGAGCGTCCGAAAGGACTACGAGGTGCTTCCTCCATTTCAGAACTCCACTAGAAActttgaagaaccttttttcgAAGATCAGGTCCATCGGCCCGCTCCTGCCGCTGACCTCAGCATGCACCTGGGACTCAAGTCCACCGGTAACTACGTGGACTTCTACTCAGCTGCCCGTCCCTACAGCGAACTCAACTACGAGACGAGTCACTACCCCGCCTCGCCCGACTCGTGGGTGTAGGACTCGATGAATGATGACCCCTCAGATGACCCAGTGGATGACTCCCCCTCCCCCTTCCCAGTGACTACTACCCGACGAAATCCGGGTGCTTGCAAAGAGAGGCTGGAAAactgtgcatgtgcatgcataCCACATTTTCGTCAACACATTTCGTTCGTCACAAGGCTTGTTCCATGGAAAGAGCAGGATTGAAGAGGGAATATCGGGATGTAAgcacaaaaaagaaaggattTACGAAAGATGACAGAAAGTTTTGGCCCTGAAAGGGTTTGAAAGGGATTTGTAAAGTAGGGAATTTAACTAGCAAGGATGCAAGGATACGTGGACAGAAGCGTAAAAGATGTTTACGTGGAATTTGGGGAAcagcttttcactttttttttttagcattttctcTCACCACCTCATTGTGAGTCATGTTGAGTTTTGCCGAATGTTTGAGATCTGTTTGAGATTTTTCCAGCCTTTTTATCTATTTCCGTTATTCCTCTTCGTTTGATTTGTACTTGATTGGTGTacattacactgctgccactCGGAGGTGACTTTGGATCTTCttttacagcacaaaaaaaaaacctagaccACTTTTATTTTAGAGTAATGTCTCAGCTATCAGTGTCTCATTTTCAGAACAGGGTATGTTTCCGGAGGAGTATTGTTCGTTCTGATAACGTGAGTGCGTTTGTGTTTCTAGACCAACATTTTGAAAGCAGTTAAGAGAATATCATTCCACTCTCCGTATTGATGAAGTGCTTTCTCACTGCCTAACAAAAGACGTGtagatatttaaacattttgatttgtcatttttttcacatttttgttttgggACAAGAgtgttaaaacataaaaaaaaacaaaagatgcaACTGTTTGTCATCCATGCCTGACCTGACTGATGAGATGACTGCCGTTGTGCCAAAAGTAAATCACCACTGGAAATGTTTTAACCCAAATTTGGTGCGTTTATACCACTAATTATTTACTTTccaccatttcttttgttcatGAAtgtgttggggtttttttgttctGGAATTAAGCTACTCATCTAGGCAACACTGGAGTAACAAGCCCGGAGAGTGAGATCTCTACGAGTTTAATTTCCTCCAAAGATGTAcaaaatctgtctctctgtgttagCCGAGTGTGTGCCGTGTGTCGTCCATGTTTGAGATGATGACAGGCGGGGTGGCTTCTACCGTCCGACTTCTACTGGCAAAGCaccgtgaaaaaaaaaaactactagaCTGAGATGTTCATAGAGAATGATGACgattatataaatatacgtataaatataaatctatatcaTTTTTATGTGCAGATATTGGTGTCACGAAAAAGCAACAAAATGGCAAGAAAAGACTTCTATTAAAAAATTCTGTTCACCTAAATGTTCTAATTccaacagagaaaaagaaaggagaagaaaaaaaataataataataatgtcaatcCCCGGTctcagttgttgttgtttccaaGCTCCATAGATAATCAGGCTGGATTTTGATGATGTTCTGGTGCCAGGACAATAAAATTACTGTTTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396221 lncRNA upstream 127638 18933049 ~ 18933251 (+) True G334575
TU396219 lncRNA upstream 128179 18932502 ~ 18932710 (+) True G334573
TU396029 lncRNA upstream 206886 18761089 ~ 18854003 (+) True G334386
TU396027 lncRNA upstream 313412 18722416 ~ 18747477 (+) False LOC117595806
TU396406 lncRNA downstream 17764 19345889 ~ 19351752 (+) True G334733
XR_004576958.1 lncRNA downstream 193240 19521365 ~ 19522260 (+) True LOC117595782
TU396487 lncRNA downstream 232977 19561102 ~ 19589060 (+) True G334806
TU396561 lncRNA downstream 308743 19636868 ~ 19703804 (+) False cip2a
TU396588 lncRNA downstream 376560 19704685 ~ 19707006 (+) True G334888
XM_026937802.2 mRNA upstream 27228 19021006 ~ 19033661 (+) False zc2hc1a
XM_026937801.2 mRNA upstream 27228 19021007 ~ 19033661 (+) True zc2hc1a
XM_034298158.1 mRNA upstream 129617 18816236 ~ 18931272 (+) False LOC113541280
XM_034297842.1 mRNA downstream 4049 19332174 ~ 19335280 (+) True LOC117595764
XM_034298229.1 mRNA downstream 6901 19335026 ~ 19336650 (+) True LOC117595802
XM_034298163.1 mRNA downstream 11041 19339166 ~ 19356597 (+) False dap
XM_026938102.2 mRNA downstream 11051 19339176 ~ 19360737 (+) True dap
XM_026938081.2 mRNA downstream 63848 19391973 ~ 19395890 (+) True ndufb4
TU396015 other upstream 342936 18693149 ~ 18717953 (+) True G334373
trnaa-agc_16 other upstream 680875 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 681515 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576959.1 other upstream 737594 18315360 ~ 18323295 (+) False mtfr1
TU396386 other downstream 11081 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 11081 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 11081 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 11081 19339206 ~ 19360737 (+) False dap
TU396391 other downstream 11081 19339206 ~ 19427936 (+) False dap

Expression Profile