RNA id: XM_026938095.2


Basic Information

Item Value
RNA id XM_026938095.2
length 3043
RNA type mRNA
GC content 0.48
exon number 29
gene id pign
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18503818 ~ 18523294 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCATCCAGGAAGTGGATTCACACAAGCTGTTCTAGATTGTTAGGCAAAATAAAGTCATTATTAAAGTTCATTTCGCCAGTTAATTATTGCTCATTGTTAGTGTGACACTGTGTGGATTTGTGGTGGGAAGAGTTGAAAAGTCGTACAAGCGACTGTTATGCTGAAACAAGCATGAAACAAACATTACGCAATATCGCAAAGGATCAGCTCGATAGACAGGATGAACATGATCACATTCTTTATCGTGGGGCTTCTGGTCCACGTGGTCTTCTTCATCTCCATATTTGACATCTACTTCACGTCACCCTTGGTTCATGGGATGAGTCCTCAGCGTGTGCCCTTACCGTCGCCTGCCAAGCGCCTGGTGCTCTTCGTGGCAGATGGACTGAGAGCAGACAGCATGTTTAAGCCCGACACCAACGGCACCATCAGGATGCCCTATTTAAGGAGTGTAATTCAGGAGAGCGGTTCATGGGGAGtgtcacacacacgtgtacCTACAGAATCCCGTCCTGGACATGTGGCGCTTATAGCAGGCTTTTATGAGGATGTCAGCGCTGTGGCTAAAGGCTGGAAGGAGAATCCAGTGGAGTTTGACTCTGTGTTTAATGAGAGCAGGTACACATGGTGCTGGGGAAGTCCTGACATCCTGCCCATGTTCGCTAAAGGTGCGAGTGGAGATCATGTGTACACTCACACTTATCCTGCTGCGATGGAGGACTTCGCTTCAAAGGACGCCTCCAAACTAGATACCTGGGTGTTTGATCAAGTGAAGGAGTTCCTCAGATCAGCAAAAGAGAATCAAACTCTCATGTCTCAATTGCATGAAgataaaattgtgtttttcctTCATCTTCTGGGGATTGACACCAACGGACACGCCCACCGGCCCATGTCAAAGGAGTATCTGGATAACATTGGCCTGGTTGACAGTGGAGTTGCCGAGATTGTTACTGTGTTGGAGGAGTTCTTTGGGAACGATGGCAGAACAGCGTATGTTTTCACAGCTGATCACGGCATGACAAACTGGGGGTCTCATGGAGCCAGTCATCCATCAGAAACCCTCACCCCCTTGGTGGTGTGGGGGGCCGGAGTTCAGAGAGCTCAGAGAACCACCACTTTTCAGAATTATGGTGATGACTACATCAGAGAATGGGGGCTGGAGACGTACAGGAGAATCGATGTCAACCAGGCTGATATAGCACCGCTCATGTCATCTCTCATCGGGGTTCCCATTCCACTCAACTCTGTGGGGGTCCTGCCGCTCAAGTACCTCAATAACAGCCAGCATTTCAAAGCTGAAAGCATGTATGCAAATGCCGTTCAAATCCTGGAGCAATTCAAGgtgaAAATGACGCAGAAAAAGGAGACCACTTTGTCGTTTCTCTTCACGCCGTACCAACCTCTGACTGATTCTAAAATGACTGAGTTTGTGAGTCACACAAGATCACTAATCCAGAAAGGGCACTTTGATGAAGCTATTCAACAGTGTGAGGTTCTGATAGATCAGGCCATGGAGGGATTGTCCTACTATCACACCTACGACCGCCTTTTCCTGGGCTGCAGCGTTGTCTTAGGTTTCATCGGATGGACGTCTTACGTGGTTTTGGTTATCCTGAAGACTCACGCCAGCCTGCGCAAACCACCTGCAAGCAGAGACAAGACAGCAGGGAGACATCTGGGTCGGGTTTTCGTGTGTGTGGGCCTGCTGGTGTCCgtctttctgtttcttcagGCCAGTTCCTTCACCTACTACATCTACTGCCTGTTGCCTGTCCCCGTGTGGTACGGAGTCCTAAAAGAATTTGGGATCCTTGTTGATCTTATGAGATCAGTTCCTTCCCTGAACCTGAGCAAATGCTTTGGATATTTTGTTCTAGTTACATTTGGGATAGAGCTACTGGTTGTGAGTTTTTTCTATCGGGCTGTGTTGACCCTGGGACTGATAGTGCTGGCACTGTGGCCTGTTGTCTCAGGGCTTTATAGAAAAACCAAGTCCAGGTCAGTGAGCTGGGTGTTGAGCTGCTTGTGTCTGGCAGTGTTTCCTCTGTTGCCTGTTGTCGGACGAGAACCCAACACCAACTATGTGTTATGTGCTGGAGCTCTAATGCTGTTCACCTCGTTCCTCTACATTTTATCACGTAGACACGCAGGCCTGCATACGAGAGATCGTTGGCTGTTTATTGGccagATGCTGCAGGTGGCGCTGTGCGCATACGTGCCTTCCAGCACACACTCCAGTCTGCAACTCAAACAAGGCCTACCGCTCTTCAATCAGCTCATCAGCTGGACCACTCTGGTCTCATCATTTTTTGTGCCGCTGCTGAGTTCTACGCGACTCTTCCACAGGCTGCTGAGTATTCTCATGTCCCTCATCTGTGTGTACCTTCTCCTCAGCACTGGGTACGAGGCCCTGTTTCCTCCTGTACTGTCATGGCTGATGTTTGTGTGGATCCATATGGAGCAGGAAGCCATAGACACACACGGAATGTCCAACAGGAATGAGCTTTCACACATTGATTTTGCTGAAAATATCGACTTATCCAGAATCAGGCAGCTGAGTTTGGACGATATCAGAAGATCGCACTTCTTTGTATTCTTCATAATCATTGCATTCTTTGGCACAGGAAACATTGCTTCCATCAACAGtTTTGACCCAGCCTCTGTCTACTGCTTTCTAACGGTCTTTAATCCTTTCATCATGGGTGGCCTTTTAATGTGGAAGGTCCTGATTCCATTCATAATTGTAATGTGCACATTCGAAAGTGTTCAAGTGTCAACACGGCTTTCGTCACGAAGCCTTTTCCTCATTGTGCTGGTCATCTCTGATTTGATGGCACTGcacttcttcttcttggtgAAAGACTATGGAAGCTGGCTTGATATTGGTACAAGCATTAGTCACTACGTCATTGTCATGTCCATGACCATCTTCCTGATGCTGCTGAGTGTGATGACACACATCTTGACCTCAAATAAACTCCACATTGGACAAAAAGTGAAGGTGCACTTTAAGTGATCTGCATTAGACAGTGTTGGAGAA

Function

GO: NA

KEGG:

id description
K05285 PIGN; GPI ethanolamine phosphate transferase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395842 lncRNA upstream 25079 18474684 ~ 18478739 (+) False mcmdc2
TU395831 lncRNA upstream 63162 18440255 ~ 18440656 (+) True G334211
TU395830 lncRNA upstream 64372 18439149 ~ 18439446 (+) True G334210
TU395829 lncRNA upstream 66412 18435721 ~ 18437406 (+) True G334209
TU395716 lncRNA upstream 178933 18296643 ~ 18324885 (+) True G334120
TU395933 lncRNA downstream 20068 18543362 ~ 18581969 (+) False LOC113541128
XR_003404150.2 lncRNA downstream 20096 18543390 ~ 18681823 (+) False LOC113541128
XR_004576990.1 lncRNA downstream 20096 18543390 ~ 18680498 (+) False LOC113541128
XR_004576989.1 lncRNA downstream 20096 18543390 ~ 18584755 (+) True LOC113541128
TU395987 lncRNA downstream 155581 18678875 ~ 18738178 (+) True G334345
XM_034298211.1 mRNA upstream 17809 18468022 ~ 18486009 (+) True mcmdc2
XM_034298210.1 mRNA upstream 29159 18467878 ~ 18474659 (+) False mcmdc2
XM_034298209.1 mRNA upstream 29159 18468026 ~ 18474659 (+) False mcmdc2
XM_034298208.1 mRNA upstream 29161 18468022 ~ 18474657 (+) False mcmdc2
XM_026938083.2 mRNA upstream 36573 18453107 ~ 18467245 (+) True sgk3
XM_026938176.2 mRNA downstream 7181 18530475 ~ 18542760 (+) True hnf4g
XM_026938175.2 mRNA downstream 10984 18534278 ~ 18542760 (+) False hnf4g
XM_026938177.2 mRNA downstream 10987 18534281 ~ 18542356 (+) False hnf4g
XM_034298302.1 mRNA downstream 188754 18712048 ~ 18733080 (+) False LOC117595806
XM_034298301.1 mRNA downstream 193016 18716310 ~ 18733080 (+) False LOC117595806
trnaa-agc_16 other upstream 123804 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 124444 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576962.1 other upstream 180523 18315358 ~ 18323295 (+) False mtfr1
TU396015 other downstream 169855 18693149 ~ 18717953 (+) True G334373
TU396386 other downstream 815912 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 815912 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 815912 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 815912 19339206 ~ 19360737 (+) False dap

Expression Profile