RNA id: XM_034298018.1


Basic Information

Item Value
RNA id XM_034298018.1
length 1753
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC113541230
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18523154 ~ 18527695 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTACGTCATTGTCATGTCCATGACCATCTTCCTGATGCTGCTGAGTGTGATGACACACATCTTGACCTCAAATAAACTCCACATTGGACAAAAAGTGAAGGGACCATGAATTCAACTATGAACCAAAATGCTACCACCAACGAAACTGATGCCAGCTCTAACACGACGTCTGGAATGACGGGTCACAGAATCGCCCTGGTCATCATCTACACGCTGGTGTTCATGGTGGGAAGTGTCGGCGTGACCCTAATGATCGGTGTGCTAAAATCAAACCTGCGCTCGTGGACCACTGTCGCCTTTTTCAACTTGATCTTGGTCCACAGTATCTTCTTGCTCACCATCCCTTTCCGCATCAACTACTACGTGACGGAGAACTGGGACCTGCCTCTGACTTTCTGCAAAGTGGTCAGCAGCATGATCCACATTCACATGCATGTGGTCTTCGTCATCTATGTCATCATCCTCACCATTCATTTCTTCCATTACTTTAAAAAAGTGGAGCAAATGGAGTTCTATCGGAGTCTCCATGCCATGGCATTTAGTGTCGGCATATGGTTGATTGTGATAATCTTCAGCCCTGTGATCTTATATCATTATGGGACACATGCGAATGCCACTGAGCACAAATGCTTCCACTTTGCCGCAGAGCTCGGAGTAGTACCGGTGTGggtttgtaacatttttttgtctatttgtaCAGTAATCTTGTCGTGCATCGTGAGCTGTATACTTTCAGTCATTCTCTACTTGATGATCAAAAAGCATGGTGCGTCTTCATGGGCTCAGCAGGAGTTCTGGGCTCAGATGAAGAACATCAGCCTCGTGCTTATCATCCTCTTCTGTCTGGTGCCGTATCACCTGTATCGGCTGTACTATCTAACCAGGTTTTCTGAACTACAGGAGGAAAATGAGGTGTTTCTGGCCATCACATCCCTTACCTGCTTCGACATGATGCTTGTTTTCGCAGGGAAGGGAATATGCCATAGGTGCGGGGGTTGACTGCAGAAAACGCTGCTCTGTGGAACCTACTGTCTTAATGTTGCAGGAAAGGAGGAAGAGAACGAGGGTCGTGGTTTACTGCCGAGATCAAACTCAGCATCATTGATCTAAAGTGGTTGCAAATTGTTACATCGCTGACTCTTACCTTATGAATGCTGTATGGAAAGACGAAAACCATTTCTCAAAAACCTAACTGAAAGATCCCTTTAAATTTTGATTCTTTTAACCTCAGGAATTTCAGAAATAGTAAAAGGCAGCTTGCTTGTATAAGGTGAACTGCCATCTGCTAGTTTTCTTGGAAAGGtctattaaaggtgcagtttattatttataaatttcttactagtacaaatgatctgtataaatatgtagaacaagataataaaaattgtttaagCAGTGGCATCTGCACAAGTGTATTATTGGCCTGAGAAAACACATTTGGGAAATTGTGGTCGGGGTCGGAATGCATGTACTACATGTATTTACATGTATCtcctgtcagtatttttatagacacgccccaaTGCCTTTTCATCTCAGTCTGTTCGGAAAGGGAGAATGTACATTTAGAACAATGGTTCTCAAggtggggtctgtgaagcatagcttctttatttttatttttattttgattatttttattttgtatttggtggaaatcacaacttACCGTTATCAAagttcttatatttattatagagtGTTCTGTTGTTGAAACATTGTGGAAGAATATaactgtacacatttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395842 lncRNA upstream 44415 18474684 ~ 18478739 (+) False mcmdc2
TU395831 lncRNA upstream 82498 18440255 ~ 18440656 (+) True G334211
TU395830 lncRNA upstream 83708 18439149 ~ 18439446 (+) True G334210
TU395829 lncRNA upstream 85748 18435721 ~ 18437406 (+) True G334209
TU395714 lncRNA upstream 198330 18302862 ~ 18324824 (+) False G334120
TU395933 lncRNA downstream 15667 18543362 ~ 18581969 (+) False LOC113541128
XR_003404150.2 lncRNA downstream 15695 18543390 ~ 18681823 (+) False LOC113541128
XR_004576990.1 lncRNA downstream 15695 18543390 ~ 18680498 (+) False LOC113541128
XR_004576989.1 lncRNA downstream 15695 18543390 ~ 18584755 (+) True LOC113541128
TU395987 lncRNA downstream 151180 18678875 ~ 18738178 (+) True G334345
XM_034298211.1 mRNA upstream 37145 18468022 ~ 18486009 (+) True mcmdc2
XM_034298210.1 mRNA upstream 48495 18467878 ~ 18474659 (+) False mcmdc2
XM_034298209.1 mRNA upstream 48495 18468026 ~ 18474659 (+) False mcmdc2
XM_034298208.1 mRNA upstream 48497 18468022 ~ 18474657 (+) False mcmdc2
XM_026938083.2 mRNA upstream 55909 18453107 ~ 18467245 (+) True sgk3
XM_026938176.2 mRNA downstream 2780 18530475 ~ 18542760 (+) True hnf4g
XM_026938175.2 mRNA downstream 6583 18534278 ~ 18542760 (+) False hnf4g
XM_026938177.2 mRNA downstream 6586 18534281 ~ 18542356 (+) False hnf4g
XM_034298302.1 mRNA downstream 184353 18712048 ~ 18733080 (+) False LOC117595806
XM_034298301.1 mRNA downstream 188615 18716310 ~ 18733080 (+) False LOC117595806
trnaa-agc_16 other upstream 143140 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 143780 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576962.1 other upstream 199859 18315358 ~ 18323295 (+) False mtfr1
TU396015 other downstream 165454 18693149 ~ 18717953 (+) True G334373
TU396386 other downstream 811511 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 811511 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 811511 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 811511 19339206 ~ 19360737 (+) False dap

Expression Profile