RNA id: XM_026938097.2


Basic Information

Item Value
RNA id XM_026938097.2
length 7086
RNA type mRNA
GC content 0.45
exon number 24
gene id LOC113541231
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12766560 ~ 13015109 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGCTGGAGCTCTGAGGAAAGACTAGTCAATGTAAGTTTGAGAGCCGGGCAGGAAGCGCATGGCTGGACATTCACTCCGCTATGGATTGAGCATTGAACTGATATTGTTTTCGGTCAGACGGAGCGCGAGCTGATGCGCTGATCCGCAGCGGTTTGTTGTCCGCGGTGCAAACCCCGATCCTGTTTTCTGACTCGGGCCAGGAGAAAACATCAGTACCAGCACCAGGTGCGTGTGTCAGCAGGGGTAAGgagtgtgtagaagtgtgtggaCTGTGTAGGAGAAGGCTGGGGAGGATGAGGATGGTGCGCGCGGGCTTCATCCCGCTCCTGTGGATCTTCAGAATCAGCATCATCTCGCACGCGGCTCCTTCATCCGCCTACAAGTGTGATGAAGCACTAGCCACACCCCTTTCCCACAGTGCCTTCAGTGGTTCATCTGTCTTCACCACTGGATATGCTGCTGGATATGCCAAACTGAACAGAAGAGGAGGTGCTGGAGGCTGGTCGCCTCTCGACACTGATCATTATCCATGGCTGCAGGTGGACCTCGGCAGCAGGAAGCTGGTGACGGCCATCGCCACTCAGGGCCGATACAGCAGCTCAGACTGGACGACACACTACCGGCTACTTTACAGTGACATGGGCAGGAACTGGAAACCCTACCATCAGGACGGAAACATCTGGGTGTTTACAGGAAACTCCAACACAGAGAGTGTAGTGCGTCATGATCTTCAGCACAGCATCGTGGCCCGATATCTACGCTTCATCCCTCTGAGCTGGAGTGAAGAGGGTCAGATAGGTCTGCGGATGGAAGTCTATGGCTGCTCATATTGGGCAGATGTGATTCACTTTGATGGCCAAGGCGTAATCTCCTACCGATTcaagatgaagaagatgaagattCTGAAGGATGTAATAGCACTAAAATTTAAGACGGGAGAAAGCGATGGGGTGATTTTGCATGGCGAGGGTCAACAAGGAGATTACATCACACTGGAGCTGAGGAAAGGAAGACTGCTGCTCCAGATAAACCTTGGCAGCAACCAGTACGGTTCCATCCTGGGTCACACGTCGGTGAGCAGCGGCAGCTTGCTGGATGATCATCACTGGCACTCGGTCATGATTGAGCGCTACCGGAGAAATGTCAACTTTACCCTGGATCAGCACACTCGGCACTTTCGTACCAATGGCGAGTTCGACCACCTCGACCTTGACTATGAGTTGAGTTTTGGAGGAATGCCCTATTCAGGCAAGCCTATCTCAGGAGGCCGGAGAAATTTCATAGGCTGCATGGAGAGCATCAACTACAATGGAGAAAATATCACTGACCTGGCCAGAAGAAAGAAACTGGATACCTCTAGCTTTCGCAACCTGACATTTTCCTGCGTGGACTCTCACACCTTCCCAGTTTTCTTCAATGCCACAAGTTTCCTGCAGTTACCAGGCAGAAGGGAGCACAGCATGGTGTCTGTAAGCTTCCAGTTTCGCACTTGGAATGCTAACGGACTGCTCCTGTTCAGCGAACTGGCTGATGGCATGTTGGAGCTTGTGCTTAAAGATGGCAAAGTCATGGTGCACATCAGTGTTTTGCAGCTGAAAAGCTCACGTGTTGACATGGCATCAGGTTCAGGGCTGAACGATGGAGAATGGCATGATGTTCGCTTTTTGGCCAAAGAGAACTTTGCCATGCTGACCATAGATGGAGATGAATCCTCAGCTGTGAGGAACAATGCAGTCATTCACATTACCGCTGGAGGAATGTATCATTTTGGAGGTTATTTCCTGAGGACACTGGTGTCTCCCTCGCAGCGCTCGTTTCAGGGCTGCATGCAGCTCATCCAGGTGGATGATCAGCTGGTCGACATATCAGCAGTGGAGCGGGGCATGATAGGAGCTTTTGAGAATGTCAGTCTGGATATGTGTGCCATTATAGACAGATGTTTGCCCAATCACTGTGAGCATGGAGGAAGGTGCTCTCAGACCTGGGATaccttcagctgctcctgtgATGGCATTGGGTATGCTGGAGCTACCTGTCACTCCTCAATCTATGAGCAGTCATGTGAGGCTTATAAGCACCTGGGGAAAACTTCTGATGTCTACTGGATCGATCCTGATGGCAGTGGCCCTCTTGAGCCATTCAGAGTCATCTGCAACATGACAGAGGACAAGGTGTGGACGATGGTGGTGAACAGCCTGCCAGCTCAGACGACTGTATCAGGTTCAAGCAGGGAGAGACGCACAGTGCTGCATCTAAACTACAGTGCCACTATAGAGCAGATCAGCGCCATTACAGATGCTGCAGAGCACTGCGAGCAACACATTGCCTACACCTGCCGCTCATCACGTCTACTCAACACACCCGatGGCAGTCCGTACACATGGTGGGTTGGCAGAGGTAATGAAAAGCACTTCTACTGGGGTGGTTCTGCACCGGGAATCAAGAAGTGTGCCTGTGGAATTGAACGCAATTGCACAGACCCCAAATACCACTGCAACTGTGATGCTAATCACAAACAGTGGCGAGAGGACTCAGGGCTTCTGGTCTATAAGGACCACTTACCTGTGAGTCAGGTGGCTGTAGGGGACACAAATCGAGCCGGATCAGAGGCCAAGCTCACTGTGGGAGCTCTGCAGTGTCATGGAGACCGTAATTACTGGAATGCAGCGTCCTTCACCACACCATCCTCCTACCTGCATTTCTCCACTTTCCAAGGGGAAACGAGTGCTGATATTTCCTTCTACTTTAAGACCTCTGCACCTCATGGAGTTTTCCTGGAGAACTTGGGCAACACAGATTTTATCCGCCTGGAGCTAAAATCACCAACTGTGGTTTCCTTTTCCTTTGATGTCGGGAATGGGCCTGTAGAGCTGAAGGTCCGTTCACCAACACCGCTAAACGATGACCAATGGCATCGCATCAGCGCAGAGAGGAATGTTAAAGAGGCTGTGCTGCAACTGGATCAGCAATACAGGGAAGTTCGAGCTGCACCTGCTCAAGGACACACACGCCTGGAGCTCTACAGCCAGCTGTATGtggGTGCAGCAGGAGGGCAGAGAGGCTTCCTCGGATGTATCCGCTCCCTAAAGATGAACGGTGTCACCCTTGACCTGGAGGACAGAGCAAAGGTCACGCCCGGAGTCAAACCTGGATGTTCAGGTCACTGCACTAGTTTTGGGATGTACTGCCGCAGTGGAGGAAAGTGTGTGGAGAAATACAACGGCTACTCATGTGACTGCAGTGGTACAGCTTACGAAGGACCCTTCTGTACTAAAGATGTAGGAGCTTTCTTTGAGGCAGGAACTCTGGTCCGCTATAACCTTGTGCCCGAGTTGATGGCCGCTACATCGAGCATGGACGGGAAGGATTTGAGTCGATCACAGCTGACAGAGAAGAACCTGACCCAAGAGGTTGTGACCTTCAGTTTCAGCACATCCAGCACTCCCAGCATCCTCCTGTACATCAGCTCATGGAGCCGTGACTACATGGCAGTGGTACTGAGGCACAATGGTACACTGCAGCTGCGTTATAACCTCGGAGGTCTGCAGGAGCCCTTCACCATTGATCTTGACCAACGCAATTTAGCCAACGGACAGCCACATAATGTCAACCTAActcggacagagagagaaatacacgTCCAGTTGGATCACTATCCTTCAGTCAGCTACACCCTGCCTGAAGCATCTGACACTCAGTTCACCCTGGTGAAAACCCTCTTCCTAGGAAAGGTCTATGAAACTGGTCCCATTGACCCAGTGCTGATAGAGAAGTATAACACCCCTGGCTTTGTAGGCTGCCTATCCCGAGTGCAGTTTAACAGCATCGCTCCTCTGAAAGCAGCTCTTCGCCCCCAGCTCTCTCTGCCAGTGTCACACCAAGGCAAACTGGTTGAATCCAACTGTGGCTCATCACCTCTCACCATTTCCCCAATGTCAGCTGCCACCGACCCCTGGCACCTGGATGGAGGTGCTGACTTCCCGTTCAATGAAGAGATAGTCATACCAGACGAGGTGAACAGGAATTCAGCAGTAATCGGAGGCATCATTGCTGTGGTCATCTTCACCATCCTGTGCATTCTGTTGTTCCTGATACGCTACATGTTCCGGCACAAGGGGACGTATCACACCAACGAGTCCAAAGAGGCCAAACGCTCCGAATCAGCTGACACGGCCATCATCGCCTCCGAGCCCAATTTTACAGAAACCATTGATGAAAACAAAAAGGAGTGGTTTATCTAAGACATATTTGCTGGGGAgcgtacacacactctcactaaaCATCAAGAAAGTGGGAGCGATCTCAGAACCGAGCTGAGAACCTGAACTGTACGCACAGGATGGCTCGTCTCTGTTGTGGTTGGACGATTGAGAAgtcttttataaattaattgtaAATTGTGTGAACAAAACAAGACACTGATTTGCCGTTTTGATTTTGTCAAAAGTTTGGTTGTTAttcatataaatcatttttatttatttccatctttaaattttaaacaattttttgtaAATGCCTCAAAGTGGGAGGGCTGGGATAATTCCCTAATGTTAAGatgattaatgtaattattaatgtattaatagtattaatgTAACtattttacattcatgaaaGTAGCTTTCTACAGGTGGCCCTCACAAACTCTAAATGTCACAATTATGTCTAATAAATTACTAGATATATTTGAAGTAAATTATAGGATTAAATCAACCCCCATTCCCAGAAGTGAAAATGCAACCTGGTTTGCCTGGAATTGCCATTGTTCATAAAAAAGTCTTGTAGATTAGGGTGGCAGAGATAATCATTGAATGAAAAttcattgttttcttttgctgGAAGCATAGTGTAGACAGGTAGAATAGACTGATAactctggcaaaaaaaaaagaggaacaaaGGCGGCACCAAGAAGCCAAGAATCAAAACCAGAGAAGCATTCAAGGAGGATGCAGCGAAAAATATTTTGATCAGGTGTGCAGCGCAAATGCTATAAGGAGGAACATGGAATTTAGCCGACATTCATTTGCAACATGTTCAGTGCCATGATTATGTCACATGTTACATACAACTTTTCCATCAGTAGCATCTGCTTGGTTGTCACGTTATAGCAAATGCATAATGGGAGGTAAGCAAATAACCATATTTTGTTAGCTGCTTATCCAGTACATTTAATCTAATGCATTGTTCAGTGAATTACAGAACTTCTGCAGAGCCACGTTTAAAAGTCTTGAGGAATGAACTCCTGCTTCAACCCCCACTTGGTTTTAACTAGAGGTGCTGTGGGAGTGGTTTAATCCCACTCATGCAGctattgtatttgtttgtgcCTGCTAGAGGTATATTCTACTGAATTTATTTGGTTAATTTAACTAGTAGCCTAGTTTAAACCACTAGAACCCTAACCAGGcagttactgaggatgaatgaacaaacacagTAAATGCATTCAGGTTTACGTTAATGAAGATGGTCGTTGATTGTCCCCTCATAGCTAACTGCTCACTCATGcctgaatgaaagaaaaacctcCTGCTCACACAACTATTTTGTTGTATATATAACATTCTGCTTAGGCCTTGAGCAAAACCCTGAACCCCCAACTGTTCATCTCTGTTTCAACATGATCACCTCAGTTTTTCCTTTGGTGTAAAGCATCAGAtcaataaatgtatattaagGTCAGTAGACAAAGAAAAAGTAAAGTAGGCATTAAGAACATCCAGTGGTGCTCTTGTACAAGGAGATCCATTAACAATCAGATCTTATTTTCTGATGGGCTGAGATTAAAGTGATGAGGCTAAAAAGGCTAAAAGGCTTCATCCACAGTGCCTTCTGCTTGAGACCTGATTCTCATTTATACACAAAAATGCCCAAGGACAGTGTGCTTTTGTATGATCTTTTTAAATCACAGTTGTAATTGAGGTTGAAACCCATCTGATGTTGATAGAATTGTATAAATCTAATGGGGCTAAAAGggaaatccatttaaaaaattttctaatagaaaatagaacaaaatgCAACTTTATAGTGTTGCCTATTTGCTAATTAATCTAATAGTGGCAACTACAGTGCTACATAACTGGCCTACACTGTTTTCACGAAATTAATGTCAATCAGTAATATAAgctacagtacacacatacacaaagagacagagagagagagctgtaacCATATTACTCGTTAATgaagataaaattaaataactacGGTCCTTACTTAAGGTCCTTACTACACGTCCTGCGTAGAGGTTGGATGAACGTCTAAAAATGTCCAATGTCCATATTTTTGTACGTAGCTATGTGAGATGTAGTTCATGTAAGACTCGTACATGACTAAACTGGCTGAATGACCTGTCACAATACGTTAATACATAAGGTACATTCAAAAATCTACAGTGTactatagctagctagctagttaagctcagtggttaaggctctggctTACTTATCAGAAGGCAGGGGGTTCAAGCCTCAGTGcctccaagctgccactgttaggcccttgagcaaagcccCTTAACCCGctctgtatcatggctgaccctgcgctctaaCACCAGCTTCCATaggtgaagaaaagaatttcatggtgctgtaatatatatgtgacaaataaaggcttttaTCTTCTTAAGaccaaaatttaaaatgaagatTCTTAAGACTCCAGTAGATTACTAAATAGGCTATAATTGTGgcaacatttacatacacagatGATAATAATTGAAAATGACAGTTGTATTTCTTGATATCTAATTTTAGGAATCTTCTCGATGGGTAGTCTAGGCTGTGGACGTTGCCATGGGATTTCACTACTGAAGGCTCACCAgctctttgtttgtttattaacacatttactTTAGCTGTGGCCTTGACAATTTTGTACAGAAAATATCCTttgtttgtgatttattttagaaaaactGGCTATTAGTGCCACTGCTGTTAAAGCCACTTGAGCACGTTGTTGTGTCTTCTTTCTGAAAATAATGGAGGAActgctaattattaagtaattatttttttctttacttaagTTGATTAACTTTCATTAATCAACTACAGAAA

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07380 CNTNAP2; contactin associated protein-like 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392360 lncRNA upstream 24882 12741117 ~ 12741678 (+) True G331280
TU392357 lncRNA upstream 32857 12732809 ~ 12733703 (+) True G331277
TU392342 lncRNA upstream 53882 12710519 ~ 12712678 (+) False G331263
TU392238 lncRNA upstream 316213 12448762 ~ 12450347 (+) True G331161
TU392061 lncRNA upstream 493270 12211250 ~ 12273290 (+) True G331003
TU392425 lncRNA downstream 29206 13044315 ~ 13049452 (+) True G331342
TU392426 lncRNA downstream 35933 13051042 ~ 13051859 (+) True G331343
TU392427 lncRNA downstream 39176 13054285 ~ 13054519 (+) True G331344
TU392428 lncRNA downstream 41409 13056518 ~ 13057241 (+) True G331345
TU392432 lncRNA downstream 46226 13061335 ~ 13061659 (+) True G331348
XM_034298168.1 mRNA upstream 53909 12710626 ~ 12712651 (+) True ccl34b.4
XM_026938277.2 mRNA upstream 58557 12706939 ~ 12708003 (+) True LOC113541349
XM_026938086.2 mRNA upstream 267514 12428457 ~ 12499046 (+) True hs6st1b
XM_026938147.2 mRNA upstream 532377 12181785 ~ 12234183 (+) True bcl2a
XM_026938259.2 mRNA upstream 586939 12162455 ~ 12179621 (+) True LOC113541340
XM_026938128.2 mRNA downstream 6058 13021167 ~ 13042516 (+) True cul1b
XM_026937922.2 mRNA downstream 259551 13274660 ~ 13278025 (+) True skida1
XM_026938109.2 mRNA downstream 307228 13322337 ~ 13334525 (+) True armc3
XM_026938148.2 mRNA downstream 321229 13336338 ~ 13341661 (+) True msrb2
XM_026938165.2 mRNA downstream 328637 13343746 ~ 13350216 (+) True c8g
TU392341 other upstream 53882 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 609773 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 1018001 11738158 ~ 11748559 (+) True ankha
XR_004576968.1 other upstream 1783345 10874209 ~ 10983215 (+) False acad11
TU392569 other downstream 242785 13257894 ~ 13258416 (+) True G331476
trnat-agu_17 other downstream 370092 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 2236526 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 2551066 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 4092363 17107472 ~ 17110027 (+) False hhatlb

Expression Profile