RNA id: XM_026938100.2


Basic Information

Item Value
RNA id XM_026938100.2
length 1542
RNA type mRNA
GC content 0.44
exon number 5
gene id tagln3b
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17880010 ~ 17883333 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTCTCTAGACCTTGTTGTGACGCTTGCCTATATAACGGGGCTCGTGCCACCGGGCCGGCGTGTCCGCGCGCGCCCCACCCAGAGCTGCATGGACGCTTCATTTCCGCGTCTCCAGAGAGCGCGCGCAGGACATCAGGATTATAGCAGCAGCATCCTTCTCTTCCGcCACCGAAAGATCTGACATTTTTTCCCTGGCCGCTTTGAGACTTATCCAAAAAGCCAGTGATCATGGCAAACAGAGGCCCCAGTTACGGCCTGAGCCGGGAGGTGCAGGAGAAAATCGAACAGAAGTACGATCCTGATCTGGAGGCTCGGCTGGTGGACTGGATCGTTGCACAGTGTGGAGGAAATCTGGAAAGACCCCAAACAGGAAAGCAGAACTTCCAAAAGTGGCTGATGGACGGAACCATCCTCTGCAGACTCATTAACAGTCTGTACCCGCGAGGTAAAGAGCCCATTAAAAAGATCCAGGAGACACAGATGGCCTTTAAGCAGATGGAGAAGATCTCGCAGTTCCTCCAGGCGGCTGAGGCGTACGGAGTCATCACCACGGACATCTTTCAGACTGTAGATTTATGGGAAGGAAAGGACATGGCCGCCGTCCAGAGAACTCTAATGGCTCTGGGCAGTGTGGCACTCACCAAGGATGATGGACATTACCGTGGCAACCGGGACTGGTTCCACAGGAAGTCTCAGGGTAACCGGAGGGAATTTTCCGAAGAGCAGCTGCGCCAGGGCCAGAACCTGATCAGCCTGCAGATGGGCAGCAACCGCGGAGCGTCCCAGGCTGGCATGACAGGGTACGGCATGCACCGCCAGATCATGTAACCCAGCCTGGAGATGACCTACGACCTGCATCAGACACCCAGAAGTCCTTAATCCCTGCAGAGGAGCAACAAACATCTGGTTCAGTCATCAGTTTCATTAACGTTTTTGGTTGTGAAAATGAGGTAGAACACTTTTAATATCAgtgttcttttaaaatgtcttgAAATTCCATGtatgatattaattaataacttaTTATAACTTATTAGCATGACtactgtttcattttatttttatttactataatatatatttatcagTATCCAtaatcacaaaaacattttaacataaataCCAAGATCTGTGTGATGTCCATTGCTGTTATCTCTGTAAACATTAAACTATGTCTAAAAACACATACTACAATACtaataatgtgtcaaaatagtaTTACATACTTGGTCATTTTGGCATATTTCATAGTACATTATTATGTGGTCTTGGATGCAACCTCCGTGGTAAAAGTtgcaaaatgattttaaaaaaatctacacacaaacattccTGTCAGCCTTGTACCACATGTGAATGCAGATCtgtatttatttccttatttaattgccaAAACTCCCCAAAgtacttaatattttaaaaaaatgtttgcctTTCCCTTCGGAATTGTGTGTTATAAGTTTATATCCAAGTTTCATATTATGCATCAATGTTTTGCTGGTGTTTGGTGAAGATGTTTAATAaattgatattatattaa

Function

GO:

id name namespace
GO:0007517 muscle organ development biological_process

KEGG:

id description
K20526 TAGLN; transgelin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395207 lncRNA downstream 337658 17541846 ~ 17542352 (-) True G333700
TU395151 lncRNA downstream 489897 17389862 ~ 17390113 (-) True G333657
TU395150 lncRNA downstream 490269 17389454 ~ 17389741 (-) True G333656
TU395147 lncRNA downstream 494364 17385279 ~ 17385646 (-) True G333653
TU395146 lncRNA downstream 495987 17383742 ~ 17384023 (-) True G333652
TU395479 lncRNA upstream 16506 17899839 ~ 17902383 (-) True G333932
TU395481 lncRNA upstream 19300 17902633 ~ 17902855 (-) True G333934
TU395486 lncRNA upstream 22575 17905908 ~ 17906806 (-) True G333939
TU395528 lncRNA upstream 41158 17924491 ~ 17924789 (-) True G333971
TU395616 lncRNA upstream 145242 18028575 ~ 18028834 (-) True G334038
XM_026937912.2 mRNA downstream 813 17876714 ~ 17879197 (-) True c1qtnf9
XM_034298049.1 mRNA downstream 5069 17849766 ~ 17874941 (-) True spata13
XM_034298050.1 mRNA downstream 5069 17850221 ~ 17874941 (-) False spata13
XM_026938067.2 mRNA downstream 37832 17831292 ~ 17842178 (-) True tmprss7
XM_026937907.2 mRNA downstream 51731 17815640 ~ 17828279 (-) True LOC113541118
XM_026938101.2 mRNA upstream 2215 17885548 ~ 17889762 (-) True abhd10b
XM_026938264.2 mRNA upstream 7017 17890350 ~ 17899678 (-) False LOC113541342
XM_026938263.2 mRNA upstream 7017 17890350 ~ 17899676 (-) True LOC113541342
XM_026937923.2 mRNA upstream 24251 17907584 ~ 17908742 (-) True LOC113541127
XM_026938079.2 mRNA upstream 25991 17909324 ~ 17916556 (-) True c22h11orf65
XR_004576994.1 other downstream 640904 17185524 ~ 17239106 (-) False vipr1b
XR_003404146.2 other downstream 740325 17116098 ~ 17139685 (-) False zbtb47b
XR_004576965.1 other downstream 1000126 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other downstream 1000127 16830696 ~ 16879883 (-) False oxsr1b
TU393587 other downstream 2814200 14965813 ~ 15065810 (-) False LOC113541115
TU395488 other upstream 24561 17907894 ~ 17908812 (-) False LOC113541127
XR_004576970.1 other upstream 26605 17909938 ~ 17916556 (-) False c22h11orf65
TU395529 other upstream 41742 17925075 ~ 17926835 (-) False zmp:0000000991
trnay-gua_3 other upstream 495703 18379036 ~ 18379121 (-) True trnay-gua_3
trnay-gua_4 other upstream 496316 18379649 ~ 18379734 (-) True trnay-gua_4

Expression Profile