RNA id: XM_026938101.2



Basic Information


Item Value
RNA id XM_026938101.2
length 1148
RNA type mRNA
GC content 0.51
exon number 5
gene id abhd10b
representative True

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17885548 ~ 17889762 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CGGTGCGAGGCGCAGTATGGCAGCTGTGGTGTTAACACACTGCCGAAGACGAGCTGTTCAGGCTTTGGCTCATGGAGCAGTGCGGCTTCTTTCaccccagtgtttccaggGAGTCAGACAGAAGTCCAGTACGGTACAGTACATTTCCCGGCCGGACCTCCCGAAGCTGGCCTATCGCAAAGTGAAAGGGAAGAGTCCCGGCGTCATGTTCCTGCCCGGCTTTGGCTCTAACATGAATGGTCCAAAAGCAGAAGCTCTAGAGGAATTCTGCAGGTCTTTAGGTCATTCGTGTCTGAGgtTTGATTATTCTGGTCATGGAGCTTCAGAAGGCGTTTTCTCAGAGGGAACGATTGGAAGCTGGAAGAAGGACGTTCTCTTCATGCTGGATGAAGTTGCAGAAGGGCCTCAGattCTGGTGGGCTCCAGCATGGGCGGCTGGCTGATGCTGCTCGCCGCTATCGCTCGCCCCGAGAAGACGAAAGCTCTGGTGGGCATTTCGACAGCAGCTGATCATTTTGTCACAGCATTTAAATCACTTCCTCTGCAGACAAGAAAGGAGTTTGAAGACCAGGGCATGTGGACGATCCCGACCAAAAGCAACGAGGAAGGTGTGTACACTGTTAGCATGGACTTGCTGAAGGAAGCAGAGAATCACTGCCTGCTGCAGAGCCCCATCCCCATCACGTGCCCCGTGCGCCTTATCCACGGCCTGAAGGACGAAGACGTGCCCTGGCACATCTCCATGCAGGTTGCGGACCGCGTGCTGAGCAACGACGTGGACGTCATCCTCCGGCGCCAGGGGCAGCACCGCATGGCCGAAAAGGATGACATCAAGCTCATGGTGTACACCATCGATGACCTCATCGACAAGCTGACCACCATGGCGTGACGGCGAAGACGACAAACAGCCAAACAGCCAGAACTTACCGAGAGAAcctttttccttagtgccttcATTTACTGGGTCATggtttgtgtgttgttgttttttttaaaacatttctgtttacacTTTAGTGTAGATTAGACGTCTGACTAAAGCTGCTCTTTTTGACAGTATTGTTCTCCTGTTTCATTACCACAGTCTCCCGTGCCTTCTTTACCACATCATGTTAACCAAATAAATCTTGTTAAATCTTGTATTGTAA

Function


GO: NA

KEGG:

id description
K13702 ABHD10; abhydrolase domain-containing protein 10

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU395207 lncRNA downstream 343196 17541846 ~ 17542352 (-) True G333700
TU395151 lncRNA downstream 495435 17389862 ~ 17390113 (-) True G333657
TU395150 lncRNA downstream 495807 17389454 ~ 17389741 (-) True G333656
TU395147 lncRNA downstream 499902 17385279 ~ 17385646 (-) True G333653
TU395146 lncRNA downstream 501525 17383742 ~ 17384023 (-) True G333652
TU395479 lncRNA upstream 10077 17899839 ~ 17902383 (-) True G333932
TU395481 lncRNA upstream 12871 17902633 ~ 17902855 (-) True G333934
TU395486 lncRNA upstream 16146 17905908 ~ 17906806 (-) True G333939
TU395528 lncRNA upstream 34729 17924491 ~ 17924789 (-) True G333971
TU395616 lncRNA upstream 138813 18028575 ~ 18028834 (-) True G334038
XM_026938100.2 mRNA downstream 2215 17880010 ~ 17883333 (-) True tagln3b
XM_026937912.2 mRNA downstream 6351 17876714 ~ 17879197 (-) True c1qtnf9
XM_034298049.1 mRNA downstream 10607 17849766 ~ 17874941 (-) True spata13
XM_034298050.1 mRNA downstream 10607 17850221 ~ 17874941 (-) False spata13
XM_026938067.2 mRNA downstream 43370 17831292 ~ 17842178 (-) True tmprss7
XM_026938264.2 mRNA upstream 588 17890350 ~ 17899678 (-) False LOC113541342
XM_026938263.2 mRNA upstream 588 17890350 ~ 17899676 (-) True LOC113541342
XM_026937923.2 mRNA upstream 17822 17907584 ~ 17908742 (-) True LOC113541127
XM_026938079.2 mRNA upstream 19562 17909324 ~ 17916556 (-) True c22h11orf65
XM_026938077.2 mRNA upstream 26322 17916084 ~ 17931814 (-) True zmp:0000000991
XR_004576994.1 other downstream 646442 17185524 ~ 17239106 (-) False vipr1b
XR_003404146.2 other downstream 745863 17116098 ~ 17139685 (-) False zbtb47b
XR_004576965.1 other downstream 1005664 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other downstream 1005665 16830696 ~ 16879883 (-) False oxsr1b
TU393587 other downstream 2819738 14965813 ~ 15065810 (-) False LOC113541115
TU395488 other upstream 18132 17907894 ~ 17908812 (-) False LOC113541127
XR_004576970.1 other upstream 20176 17909938 ~ 17916556 (-) False c22h11orf65
TU395529 other upstream 35313 17925075 ~ 17926835 (-) False zmp:0000000991
trnay-gua_3 other upstream 489274 18379036 ~ 18379121 (-) True trnay-gua_3
trnay-gua_4 other upstream 489887 18379649 ~ 18379734 (-) True trnay-gua_4

Expression Profile