RNA id: XM_026938107.2


Basic Information

Item Value
RNA id XM_026938107.2
length 1184
RNA type mRNA
GC content 0.46
exon number 9
gene id gtf3ab
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17467758 ~ 17470677 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCGTTCGGCAAAAAGGCGAATCTACGTGCCTTCGacggaaagaaaaaaagaagaagaagaagaagaagaagaagaagaagaaaaaaaaaacaacaacgtgAATTCATTGTGAATAAAATGGGAGAACGTTTCAAAGATCCGACTAAGAGCTTCTTGTGCTCCTTCGCCAACTGTAAGGCTTCATTTTCCAAGTCATGGAAGCTGGAAGCTCATTACTGCAAACACACTGGGCTGAGACCTTTCGCATGTGATAACTGTGATAAAAGTTTTTGCACCCGCTACCAGCTCACCAGGCACAATCTGAGCCACAGTGGGAAGAAGCCATACCAGTGTATAGTGGATGGATGTTCAGAGGGCTTTACCAGCACTGCAGGGTTAAAGAACCATGTTGAACGTGTGCACCAGCACAAGGAGAAGCACTATGTGtgTGACTATGAGGGTTGTCTGAAAGAATTTCATAAGAATAACCAGCTGAAGTCTCACAAATGTGAGCACATGAACCAGTTACCATTCGAATGTCAGTATGAGGGCTGTGGGAAGAAGTACGCTACCTCTAAAAAGCTGCAAAAACATGAGAAAGTGCATGATgGTTATCCGTGTGCTGAAGAGGGCTGTGCCTTCCAGGGAAGGACGTGGACTGAGTATCAGGCACACAGGAAAGCAGCGCACAGAGAGGCTCTGCAGTGCGACAGCTGTACAAAGGTTTTCCATAAAGCCTGGTTTCTAAAGAAGCACAAACTCTTCGTCCACTTGGGTGTACGGCGTATGTTTAAGTGCACTAAGGAGGGCTGTCCAAAAACCTACACCACGCGTTTCAACCTCCAGAATCACATTCTTTCCTTCCATGAGGGCAAACGCTCCTTCATCTGCCCTCATGACGGCTGTGGGAAAGCTTTCGCCATGGAGGAAAGTCTGAAGCGACATGCTGTAGTCCATGACCCTCAGAAGAAAAAGATGCAGAAGAAGACCAAACGAGGATGGAAGAAGCTTAAACCAAAGACGAACGTGTCGAATGCCTCTGAACTGTCTGCACAGCTGCAAAATCTCTCTCTAAACAAGTCCACGTCCCAGAACAACCCATGAACGTCATGCGGTCACTGAGGAATTTCTAGTCGACTTTAAATTCACTATCCAgcataatttcatttaaaagcacTACTAAATAAACTCTCACTTGTCTGCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395151 lncRNA downstream 77645 17389862 ~ 17390113 (-) True G333657
TU395150 lncRNA downstream 78017 17389454 ~ 17389741 (-) True G333656
TU395147 lncRNA downstream 82112 17385279 ~ 17385646 (-) True G333653
TU395146 lncRNA downstream 83735 17383742 ~ 17384023 (-) True G333652
TU395144 lncRNA downstream 86522 17380855 ~ 17381236 (-) True G333650
TU395207 lncRNA upstream 71170 17541846 ~ 17542352 (-) True G333700
TU395479 lncRNA upstream 429163 17899839 ~ 17902383 (-) True G333932
TU395481 lncRNA upstream 431957 17902633 ~ 17902855 (-) True G333934
TU395486 lncRNA upstream 435232 17905908 ~ 17906806 (-) True G333939
TU395528 lncRNA upstream 453815 17924491 ~ 17924789 (-) True G333971
XM_026937883.2 mRNA downstream 17334 17446518 ~ 17450424 (-) True si:ch211-140b10.6
XM_026938149.2 mRNA downstream 27248 17435073 ~ 17440510 (-) True pdx1
XM_034298237.1 mRNA downstream 51802 17400360 ~ 17415956 (-) True gramd1c
XM_026938073.2 mRNA upstream 8664 17479340 ~ 17483210 (-) True rpl21
XM_026937956.2 mRNA upstream 34213 17504889 ~ 17519966 (-) True wasf3b
XM_034298074.1 mRNA upstream 36288 17506964 ~ 17519933 (-) False wasf3b
XM_034298079.1 mRNA upstream 51107 17521783 ~ 17535395 (-) True cdk8
XM_026937847.2 mRNA upstream 142628 17613304 ~ 17619370 (-) True LOC113541063
XR_004576994.1 other downstream 228652 17185524 ~ 17239106 (-) False vipr1b
XR_003404146.2 other downstream 328073 17116098 ~ 17139685 (-) False zbtb47b
XR_004576965.1 other downstream 587874 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other downstream 587875 16830696 ~ 16879883 (-) False oxsr1b
TU393587 other downstream 2401948 14965813 ~ 15065810 (-) False LOC113541115
TU395488 other upstream 437218 17907894 ~ 17908812 (-) False LOC113541127
XR_004576970.1 other upstream 439262 17909938 ~ 17916556 (-) False c22h11orf65
TU395529 other upstream 454399 17925075 ~ 17926835 (-) False zmp:0000000991
trnay-gua_3 other upstream 908360 18379036 ~ 18379121 (-) True trnay-gua_3
trnay-gua_4 other upstream 908973 18379649 ~ 18379734 (-) True trnay-gua_4

Expression Profile