RNA id: XM_026938111.2


Basic Information

Item Value
RNA id XM_026938111.2
length 2806
RNA type mRNA
GC content 0.50
exon number 18
gene id gars1
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17086210 ~ 17098345 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATAGTCTGCTCAAGTGAGTTCACATCTGTCCAATCAGCAGCTCGCTTGTGTtcccaaaaacaacaaatccGAGCGAGGAGGCGGGATTCACTGGACCAATCCTAGCGCAGGACTGAGGACACATCTGACCAATCCGCgcgcaggaggcgggatttgacGGAATACGGGTAGGAGTGAAAACAAGGCGGTTTCGCCGCTCGGTTCTCCACATGCTGCGCAGAGCGACATCAGCAGTGCTGCGGAGTGGAGCCGAAATTTCAGCCGCTGTCCTTTTCATCCTCCCTGGGACCAAAGCCAAGCCTCAGCCGCTCTGTGCTTCCCGTGTCATCATCAGACCTGTTTCTCTCACAGCCTGCTTGagcaagaagaagaggagaagtcTGTGGTTGGAGCAACGTGGAGGAGAAAACATGGGCAGCAACATGGAGGAGATTCTAGCTCCACTGAGACAGGCAGTGAAGGAGCAGGGCGATCTGGTGCGGCAGATGAAAGCCGACGGAGCTCCTGACGTGGACGTCACCAAAGCTGTGGCGGAGCTCAAAGCGAGGAAGAAGATCCTCGAGGCAAAGGAGCTCTCACTGCAGGCTAAAGATGACATCGTGGACAGAGTGAAGATGGAGGACACGCTGAAGAGACGCTTCTTTTATGACCAAGCGTTTGCCATCTATGGAGgcgtGAGCGGTCTGTATGATTTCGGGCCGGTCGGCTGCGCTCTGAAGAACAACATCTTGCAGGCGTGGAGGCAGCACTTCATCCACGAGGAGCAGATTCTGGAGATTGACTGCACGATGCTCACGCCCGAACCTGTCCTCAAGACATCAGGGCATGTGGACAAGTTCGCTGACTACATGGTGAAAGATGTGAAGTGCGGAGAGTGTTTCCGTGCCGATCATCTCCTGAAGGCTCATCTTCAGAAGCTGATGAGTGACAAGAAGTGCACACAGGAAATGAAGAGTGAAATGGAAGATGTCATCACTCAAATGGACAACTACACTCAGCAGGAACTGGCTAATCTGTTTGTGAAATACAAAGTGAAATCACCCAGCACAGGAAATGACCTCACACCACCCATCTCATTCAACCTGATGTTCCAGACCTCCATCGGTCCTGGAGGTAACATGCCAGGCTATCTGAGGCCTGAAACTGCTCAGGGAATCTTCCTTAACTTCAAACGTCTGCTGGAGTTCAACCAGGGCAAGCTGCCATTTGCTGCTGCTCAGATCGGAAACTCTTTCAGAAATGAGATCTCTCCTCGCTCTGGCCTTATTCGTGTCAGAGAGTTCACAATGGCTGAGATCGAGCATTTTGTCGACCCAAATGAAAAGGTGCATTCCAAATTCTCCAACGTTGCTGATCTGGAGGTCTTGCTGTACTCGTCCAAAGCACAGACCAGCGGTCAGTCAGCCCAGATTATGAAGCTGGGGGATGCAGTGGAGCAGGGTGTTATCAACAACTCTGTCCTGGGCTACTTCGTCGGGAGGATCTACCTCTATCTGACAAAAGTTGGTCTGGCAAAAGACAAAGTGCGTTTCCGTCAGCACATGGACAACGAGATGGCCCACTACGCCTGCGACTGCTGGGACGCCGAAGCCAAAACCTCCTATGGCTGGATTGAAATTGTGGGCTGCGCTGACCGCTCATGCTATGACCTCTCATGTCACGCACGGGCTACCAAGGTCCCCCTGGTTGCTGAGAAACCTCTGAAGGAACCCAAAGTCGTCAACGTGGTGCAGTTTGAGCCGAACAAGGGAGCCATCGGCAAAGAATACAAGAAGGAGGCGAAGCTGGTCATGGAGTACCTCGCCGTGTGTGATGAGTGTTACATCACAGATCAGGAGAAGCTGCTCAGTGAGAATGGTGAGTTCACCATCGAGACTGAAGGCAAGACCTTCAAACTCACAAAGGACATGGTGAGCATCAAGAGGTTCCAGAAGACACTTCATGTTGAAGAGATCACCCCCAATGTCATCGAGCCTTCCTTTGGTATCGGCAGAATCATGTACTCCATTTTCGAGCACACATTCCACGTCAGAGAGGGTGATGAGCAAAGAACGTATTTCAGCTTCCCGGCTGTTGTAGCACCTTACAAATGTTCCGTCCTCCCTCTGAGCCAGAATCAGGAATTCATGCCTTTTGTGCGTGAACTATCTGAAGCCATGACCAAATTTGGCGTGTCCCATAAAGTGGACGACTCCTCAGGCTCCATCGGACGGCGCTACGCCAGAACGGATGAAATCGGTGTGGCGTTCGGAATCACTATTGATTTCGACACTGTGAACAAGATGCCACACACAGCCACTCTGAGAGACCGCGACACCATGCGGCAGATCCGAGCTGAGGTTCGCGAGTTACCCGAGATCGTGCGAGACCTCGCCAACGGTACCACCACATGGGCTGAGATTGAGAGCAAGTACCCCATCTTTGAAGGTCAAGAGACCAGCAAGAAGGACACAGCAGAAGAGTAGATTAAGATGCCTTACCTCATCCTGCCTCCTACACACAGGGCAACCATGCACATTTTTTACATTAGCACCAATAGGAAGAATTTGATTGCACctgtaaaatattaatgatcATTGTGAATGATGCACTCAGGTTAGTGCTATAATTACAGCCATCTtatcaaatcattaaaatatatctttataCAGCCATTGAGAGACTGTGTAAAGATGGTGGTTATTGTCACGGTTCAAGAAGAGAACATGCTTTAAAAGGGAAAACTGGAATTCAGGTATCATGGATATGCATGGAAATGCATCTTTGGTTCAATAAAAACAAAGCCAGCACTTTCTGGACCTCTAA

Function

GO:

id name namespace
GO:0006426 glycyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004820 glycine-tRNA ligase activity molecular_function

KEGG:

id description
K01880 GARS, glyS1; glycyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394629 lncRNA upstream 188355 16893006 ~ 16897855 (+) True G333244
XR_003404172.2 lncRNA upstream 196049 16888937 ~ 16890161 (+) True LOC113541357
TU394631 lncRNA upstream 196481 16888906 ~ 16889729 (+) False LOC113541357
TU394614 lncRNA upstream 256231 16732916 ~ 16829979 (+) False G333232
TU394762 lncRNA downstream 87784 17186129 ~ 17186675 (+) True G333360
TU395018 lncRNA downstream 264526 17362871 ~ 17363075 (+) True G333548
TU395063 lncRNA downstream 347840 17446185 ~ 17447043 (+) True G333582
TU395113 lncRNA downstream 442292 17540637 ~ 17541761 (+) False rnf6
TU395303 lncRNA downstream 569291 17667636 ~ 17667844 (+) True G333787
XM_034298161.1 mRNA upstream 734 17074213 ~ 17085476 (+) True spag6
XM_034298162.1 mRNA upstream 734 17074213 ~ 17085476 (+) False spag6
XM_026938124.2 mRNA upstream 734 17077631 ~ 17085476 (+) False spag6
XM_026937977.2 mRNA upstream 71416 16985047 ~ 17014794 (+) True plcd1a
XM_034297855.1 mRNA upstream 71416 16985412 ~ 17014794 (+) False plcd1a
XM_034297884.1 mRNA downstream 1819 17100164 ~ 17109773 (+) False hhatlb
XM_026937901.2 mRNA downstream 2825 17101170 ~ 17109773 (+) True hhatlb
XM_026937903.2 mRNA downstream 13423 17111768 ~ 17115776 (+) True klhl40b
XM_034298269.1 mRNA downstream 64655 17163000 ~ 17171598 (+) True sec22c
XM_026938204.2 mRNA downstream 64655 17163000 ~ 17171598 (+) False sec22c
TU393912 other upstream 1519547 15566175 ~ 15566663 (+) True G332636
XR_004576981.1 other upstream 1821623 15251635 ~ 15264587 (+) False si:ch73-173p19.2
trnat-agu_17 other upstream 3700936 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 3827794 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 4373532 12706939 ~ 12712678 (+) True G331263
TU394735 other downstream 9127 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 9127 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 186737 17285082 ~ 17300011 (+) True G333388
TU394792 other downstream 188815 17287160 ~ 17302004 (+) False G333388
TU394797 other downstream 188815 17287160 ~ 17295054 (+) False G333388

Expression Profile