RNA id: XM_026938115.2


Basic Information

Item Value
RNA id XM_026938115.2
length 2545
RNA type mRNA
GC content 0.53
exon number 5
gene id arxa
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19429768 ~ 19436760 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacacacacacacacacactgagagagagagagagagagagagagagagacacacacacacacacacacacctcgggTTACAGGCGCAGGGCGAGTGTATAGCGCTCACACAAGCTGAAACTTCACTGGACGCAGAAGgcggaaaagaggaaaagaagctaaaatagagagagagagaaaatgagcagTCAGTTCGACGACGATGCGCGCGACAGAAGCGAGTGTAAAAGCAAATCCCCGACTGTCCTCTCCTCCTACTGCATCGAGAGCATTCTGGGCCGGAGGAGCCCCTGCAAGGTCCGACTGGTGGGCTCGCAAAGTTTAACAGCGCGACCGGAGCATGAGCAGCCTTCTGAAGtttccaGTAAAGAGCTCTCCTTTGACTCGGACTTGCACCTTCCGCCCAAACTGCGCCGGCTCTACGGCCCCGGGGGAAAATACCTGGACACCAGCAGGGTGTTTCAGGAGCACGGGGAGAAAGGCGAGCTCGGCTGCGAGGGCCTGAAGATCAGCCAGGCGCCGCAGGTCAGCATCAGCCGGAGCAAGTCGTACCGGGAGAACGCGCCGTTCAGCGGGCTGGAGGAGGCGCGCAGCAGCCCGGAGCTGGCCGAGCTCGGAGCGCTCAAGTTCGAGGAGGACGCggtgaaggaggaagaggaggaggaagaggaggaggaggcgtgCGGAGCCGAGCATGGCCTGTCGCCCAAGGACGAGCCGAGTCCGCGCAACGACGCAGACGTGAAGGACGGAGAGGACAGCGTGTGTCTGTCTGCGGGCAGCGACTCGGAGGAGGGCATGCTGAAGAGGAAGCAGAGGAGATACAGGACCACGTTTACGAGCTACCagctggaggagctggagaggGCTTTCCAGAAGACCCACTACCCAGACGTGTTCACCAGagaggAGCTCGCGATGCGGCTGGACCTCACCGAGGCGCGCGTGCAGGTCTGGTTCCAGAACCGTAGAGCAAaatggagaaagagggagaaggcaGGAGTTCAGTCTCATCCTCCAGGTCTGCCCTTCCCTGGTCCCCTAGCTGCAGCCCACCCCTTGAGTCACTATCTAGAGGGAGGCCCGTTCCCTCCTCACCCACACCCGGCTCTGGAGTCAGCCTGGACCGCCGCCGCAGCCGCCGCTGCATTTCCAGGACTGGCACCACCACATAATAGCTCCGCCCTTCCTCCTGCTACGCCCCTCGGCTTGGGCACCTTCCTGGGCACCGCCATGTTCCGCCATCCGGCCTTCATCGGACCCACTTTTGGCAGACTTTTCTCCAGCATGGGTCCCCTGACCAGCGCTTCCACGGCCGCTGCTCTCCTGCGCCAAGCCACGCCGCCGGTGGAAAGTCCGGTGCAGCCGCCCGCAGGCCTGTCGGACCCGCCCACCGCCTCGCCctcttcctccacctccacGGCTGCCGACCGCCGAGCCTCAAGCATCGCCGCGCTACGTCTTAAAGCAAAAGAACACTCGGCTCAGCTCACTCAGCTGAACATCCTGCCCACCAGCGCTACGGGGAAGGAGGTCTGCTGAAGCTGTGGCTCTGAAAAATAAACCccttactgaaaaaaataataataataaagcatgaCCAAATCCACAACAGCACACCGGCGAGCTATCCGAGCCCTGGAGGCGTGATGCACTGTTACAGCGCACATCTTATTGGACATCCTCCATCAGTGACCCGAACCCCAGTCTGCAATGTAGCTACGCTGCCAAGCAACAGCCAGTGAAACTGTACTTAGGAAATCCAatccatttatgtttttttttttttgggtcaggGATGTGGTGACAGCagtcacacacaaaacagcaacaacTTCTCCTCTGCAAGAAGCATCAGCTCCAGTGTGGGACCAGAGGAGGGGGTCAATATGCCAAAGGGAACTGCTAGAACCCTCCAAATCGCACCATCACCAAATTCATCGACTGAGAAacacggaaaaaaaaaacaaataaacaacctCCCGTCCTCTCCGTGAAGATTACGCCTTCATCCCTTGTGTTAATTACGATCTTTAGGGCGGAAATTAACAACCAATTTCTTCAAAAGGACAATGATGGAGTTCAGATTGCTTGCTCATTGATCTGTTAAGAGTAGCCTAtttgtacatacacacacacatatatatatatacaacacacacatacacacacactcatacacacacactagcactgTAAAGATGATGAGTTAAATTGGGGAAAACCTTAAGCTTAAAAAAGGTGTACATTTGAAAacattgaaattgaaattcACTTGATGTAGTATTGTATGAATGGTTCCTAGTAGAGCTCAACTTATGTTCATTTTATGAAATTTTAGGTTTGTAGATGATTATTTATGTCAATCCTGTGGACTGTTCAGATCCACAGCAGGACACACTGCTGTTCCACGAGAGACTCTTctgggtttatttttttgttttgtttttttttttttttgtttttttggcaaacccaagcagaataaaaaaaagtatgaataaATCTGCTGAATGAATCTGATGAAATGGAAACCCCAaccat

Function

GO:

id name namespace
GO:0021539 subthalamus development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048666 neuron development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09452 ARX; homeobox protein aristaless-related

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396394 lncRNA upstream 69031 19317857 ~ 19360737 (+) False dap
TU396400 lncRNA upstream 69031 19317857 ~ 19360737 (+) False dap
TU396406 lncRNA upstream 78016 19345889 ~ 19351752 (+) True G334733
TU396221 lncRNA upstream 496517 18933049 ~ 18933251 (+) True G334575
TU396219 lncRNA upstream 497058 18932502 ~ 18932710 (+) True G334573
XR_004576958.1 lncRNA downstream 84605 19521365 ~ 19522260 (+) True LOC117595782
TU396487 lncRNA downstream 124342 19561102 ~ 19589060 (+) True G334806
TU396561 lncRNA downstream 200108 19636868 ~ 19703804 (+) False cip2a
TU396588 lncRNA downstream 267925 19704685 ~ 19707006 (+) True G334888
TU396939 lncRNA downstream 329710 19766470 ~ 19766826 (+) True G335214
XM_026938081.2 mRNA upstream 33878 19391973 ~ 19395890 (+) True ndufb4
XM_026938102.2 mRNA upstream 69031 19339176 ~ 19360737 (+) True dap
XM_034298163.1 mRNA upstream 73171 19339166 ~ 19356597 (+) False dap
XM_034298229.1 mRNA upstream 93118 19335026 ~ 19336650 (+) True LOC117595802
XM_034297842.1 mRNA upstream 94488 19332174 ~ 19335280 (+) True LOC117595764
XM_026938288.2 mRNA downstream 61542 19498302 ~ 19506536 (+) False pcyt1ba
XM_026938285.2 mRNA downstream 61543 19498303 ~ 19506536 (+) True pcyt1ba
XM_034298283.1 mRNA downstream 142550 19579310 ~ 19593452 (+) True mtmr6
XM_026937824.2 mRNA downstream 163805 19600565 ~ 19603770 (+) True amer2
XM_026938183.2 mRNA downstream 241744 19678504 ~ 19683656 (+) False si:ch73-264p11.1
TU396388 other upstream 1832 19339206 ~ 19427936 (+) False dap
TU396391 other upstream 1832 19339206 ~ 19427936 (+) False dap
TU396392 other upstream 1832 19339206 ~ 19427936 (+) False dap
TU396397 other upstream 1832 19339206 ~ 19427936 (+) False dap
TU396398 other upstream 1832 19339206 ~ 19427936 (+) False dap
TU396524 other downstream 139351 19576111 ~ 19577073 (+) True G334838
TU396585 other downstream 241721 19678481 ~ 19683870 (+) True si:ch73-264p11.1
TU396584 other downstream 243237 19679997 ~ 19683870 (+) False si:ch73-264p11.1
TU396960 other downstream 351823 19788583 ~ 19789058 (+) True G335231
TU397154 other downstream 723640 20160400 ~ 20163106 (+) False ccl20b

Expression Profile