RNA id: XM_034298230.1


Basic Information

Item Value
RNA id XM_034298230.1
length 6737
RNA type mRNA
GC content 0.41
exon number 14
gene id myrip
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 11122395 ~ 11308612 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTTGCATTTGCTAGCGTTTCCTATACTGATGGGTCGTTATCTATGGCCTCTAACTTCCTCTGAGGGGCCATACACAAAGGTGCAGACTTTCCAGCTCAGGGTGCCAGATCATTTCCTCGCACTGGGATCACAAGAGGTGAGTGCTCCTGAAGGCAGCAATGATAAcgatggcagtgtgtgtggcagtgaCTCGGCATTCTCCAAGCAAAGTGAAAgtcacaGCATAGCAGAGACTCTCACTGTTGCCCTACGTGTTGCTGAAGAGGCCATAGAGGAAGCAATCACTAAAGCAGAGGGCTACAGGGACAGTCTGGAGAAGCAGAATGAAGCTCGATATCTGCGTGATCATAGAGACGAGCTCATAGAGGAGCTTGCAACCACAATTGTTCAAAAAaTTATTCAGAGGGGGAAGCAGCGTTCAGAGATGCAGGCAGAGTATGACTTTGTTTGGTCTCAGACTCACAACAGTGACTTGCCCTCCCCTACCTCAGCATCAAACACATGCAACACTTCTCAGCCCAGTACGGTCACACAGGCCTGTCGCAAAAACTCCTGGCGGTCCCTGTCAGCATTATCCCTGACTAGTGACGAGTCCCCAGACAAAACGCCTGAAGCAGACAAGGTGTGTGAAGCTGCAGAACCAGAGCCAAATCTTGAGATTTACTCATCTTTGCGGAGAGAGTCACGAGCATCCATACTGGGGTGGAAAAATGTGGATCGTCTGGACAACTCCaGTGCTTCCTCTGTGCTACAGTCTCCGGATGGGAACTGGATCGCCTTACAGACTTCCCAGCATTCCCGGCCGAGCCTTTTAACCAAACGAAAGAGCTTGGTGTTCAGTGTGCTAGAGAAGGAATCTGGCGTGGTTTCAGCATATGACGAGATGGGGTCAGATTCAGAGGATGGAGCAGAACGTGATAGCTGGGGGCTTGCACTGCTGCAATTCCGCCAGCGTCTCTCAGAAGAAACACGATCATTGGACTCTCAGCGTGACACAGAGCACTATCTACCTATAACCTCACCCTCCTCGGGTCACTTCACCAACACAGAGACCCTAAATTCAGATTCTGAGAACTCTATTGCTCCCCCTACTCAAACACGCATCCCTGTTCACAATGTTACCCAGAGAAACAAAGCTTCACCTGAACCCTACCTTCCCTACATGACCTATGAGCATTACAGACCTGCTGTTAGGCTGTCACACTCACCAAGGCTTGGTGCTCTGGATGTGAATTTTAATCCTCAGGTGGTTGGAGACAGCAGTGAAGGGGAGGAGCATGCAGAGCAGATCCGAAGGTTGCGGCGTAGGAAGCGGAACAAACGCGAGTCAGCTGACCAGAGCCATGAGAACAACACTCTCCTGTTCAACACCATGATGATGAAACGACAGGACAGCCAGGAGACTCCATCAACTCTTACATCTCCCACCTATCAATCTCCAGACACTGTGATGCAACCCAACAATGTGACCTCCACTGCCATGACTCCTGAATTTGTATATCAGAACACAGTAGCCTGTAACCCTGTGCTCCCTAGTTCGATGATGCATAACCAATCTGAAAATGACACTTTGGACCATGAACTGAGGTCAAAACTCTCTGAACTGGTTGATCAAATTAGGAAGGAGGATTTGACCTCTTCAGATGATGAGCCATTCCGAAAAGTCATTGATAGGCAAcgtgatggagagagggaggaagaaagtgatggagtaagacagagagaaagaaagaatgaggcACAGAAAGAGAGTAGTAATGGCAaaatggagatggagaggaataaaaggaaaatggaaaGACTGAGCGAAAGATGGCTAGAAAGACAGATTAGCAGGGAGTGTGAGGAAAGTGATGTGGTGCGTCAGAGACTTAGAGAGACAGATCGGAAAAGAGAAGGAACCAATGAATTAGAGAGACAAATGGAAAAACAGCAAGATGGGTACAGGCAACAAAAAACAGTAAGACAAAGGCAAGTCAGAAAAgtggagacagaaagtgagaatgaaagaaaagcagaaaaagtgAAGTCAGTAGAAATAGAGCCACACACGCTAGCTCAAGTCAATGggcttagcatgagaagagaccTACAAGTGAATGAAACACAGCAAGTGACAATAATTACTGAGAAAGCAAAAGATGACGAAGTGAATATAAAGAAGAGTGTGGAAGAACACAGTGAGAAAGGACATTATTTGACTGAGGATAGCCTCAGCCTCAGCACCCCCTCTGGCCCAGAGGACCAAATGTCTCAAACAGAGaagtATTCAGCCGCTTCCCTATGCAGCATCACCACAGAGGTTCTGAAGGTCCTAAATGCCACAGAGGAATTAATCGGGGAGGCTGAAGGTCATGACCCCCACAAGTCTCCAGCTGGGACACCACTCTCTTCTGGCCCAGACAGCAGAAAACTGGACCAGCATCTTACCAAGATGGAAGAGAATgtgtactTGGCTGCAGGTACTGTGTATGGCCTGGAGGGGGCACTGAGTGACCTGGAGGACTGCGTTCGCAGTATCAGCAGTTCCACTACTGAAACAGAGCTGGCCTTCCTGGAGGATCAGGTGGCTACTGCAGCTGCTCAAGTGCAACAGTCTGagctacagATCTCAGACATTGAGGCAAGAATATCAGCACTTAAAAATGCTGGCCTGAATGTGTCCTCGCGATTTCCCAGGCTCAAGCCTCAGACCTTGGATTCCTCACGTCAGCAGAGAAGAAAGCTGCCTGTTCCACCTGCCATAGgaagccACCCTGCAGACTTTCTAGTGCGCTATTTTAGGAGATTTGCCATTTTGTAGTCATGTCCAAAAGCATAGAGGAAAAGTCAGAGGCAGAGTTGAGATCTTTTCAGCCATGACTGTAACAGACACAACCTCCATCCTGGTCTGTGAACCTCAACCTTATCTAACTACATCTTGCCCTTTCTGCCTACTGACCGTCAGGCCCACACCAGTGCCTTGATCCAAATATCAGCTCCTATAAAGCTCCTCAGCCAACCCCCAGtctcacaaaaaacaaaaaacatcccaaTGAACAAGAGAGATTTTATTGGATTCCATATGAATGAAGTTCCCACCTCAACCCTTACACATCTGAAGCATATTGGGATTTGCAGTGTTTTCTTGGCGCCAACTCTTCCTCTCTATCGGATCTCACTCCAGAGCCCCTGAACATTCGTAACCAAACATTGGAGTTTTACTACACTTCTGTGCTCCACTTCCCAGGGACTTGCTCTGTTCTTTCTGCCTTAAAGGAGTCCACACTCCTCTACAATCAATCACAGGGAGTATATTCACAGATGCTCCATATATAGAAAGTTTTACATATATGTTTTACGTATATGATTGTTGTAAATGTCACATTGTTGTATTCTTGAAATTAATTGCTGAAGTGTTAAGTGTTTAAGTTCTGATTCTGTATGTTGACAGTGTGACAAAAAATAATTGTGTATGATCTGTGTTCCCAAAAAGAGTCCAAACTGTATTTGGTAAGAATATTATATGTGTGAAATGTCATGgtggaactaaaaaaaataactactgAAGGACCTTTGTGAAGCAGAGATGTAtcctttttttcatgttttatgtttaatttccATGCAATTATACCACAAATTGTGTGGACAGTGATAACTGAGGTTCAGGAGAGGGGGaaaattatgcatttaaaacaattatCATATTTAAAGCCCTTCCTTCATTAAGACATAAATGGTCACATATTGTTTCATTTGACCttttattaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtaatgtgCATGCTGTGATACAATGTCTGATTTCCTAATCAGTATGGTTGGCTGCCTTTCCAcaaacaggcacacacacatgcattcaaGCATCCACCTACACACAGATCTGTATTTCCTTAAGACTCCTTCTGTGTGGTGGGAGTGGGGGctgtctatatatatgtatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtctaccatactgtgtgtgtcagtgtacaGGGCAGTGTATTTCACACAAGTTCCCAAATCAGATTGGACTCTTAAGTGACTGAATTGTGTATGCCAATTATCAGATCAAATCAGAAGCACGGCTATAATTTATGTGAGTGCTGTTGACTTTGCTGCCACAATATTCTCATCACTATGACCCCTAGATGTAACAGCAATGTTTAGATGTGTTTAACCTGGAGAATCACCTTCATTACAGTGCTGAATATGTGGCCAGTAGAAAACTACATTCCACACTGATACTAATCACTGAGAATTTGGTCCATAATtccatatatatacagtttgttATTAGAAGCtaatctgtctgtgtgtgcatgaattTGGGTATAATTTCCTCCAGATTAGCCATTGCATTAGTATTGCATTCATTTTAGAAGATAAATATATCCTTTATTGTCACATATCTAAATTACTTGCTTTGCATATCCTAGCTTATTAGGAAGCTGAAGTCAGAGCACACAATCAACCATAATTCAGAAGCTGTGGATCATagagggttaaggaccttgctcaaggaccTGAAAGTGGCCGCTTGGTGATCTGATCGGTAGCCCAgagtcttaaccactgagttaCCACTGCCCCATTTAATTCATAATACAACGAAATAATCTATACTTATTTCTATATTCTAAATTGGAttataaattgtttttgttgctaTAGTGAAAAACCATTAGATCAAGGGTTTATCCAAAACACTACTGTTTGATATGAGTTCTTATTAGAATTAAATTTCAGTACCAATCATTAAGAAGACTTAAAATAACATGTGACAATATCCATAGATAGTTGCATCAGAAAGAAAAGTCAGTATAATATATATCACCATAACAACTGCCTATTACATAACTTCAGTCTTCAGCTACACTCTTAGAAGAAAGGgtcccttaagggttctttggatatttAAGTATTCATTAGGATCATAGAGAGGTTCTACTTACAGCCATCTCTCATGGGGGATACTGTTTTGTAGGATTCTACTTCAGTTAAACTGAAGAACCATTTAGACTCTACATTTGAACTTTTTTCCTATGTTCACCCTAGTAAATTACAAAGCAACAAGCAGCTGTTCATTTTCTGTGACGTGTGTCTGTGACATGGAGCTGTGACTCTGACGACATAGAGACAGAGCAACAAGTGACTTTTAAATCGAAATTTTcttaattctatgcaaattaagAAAAAAGTTTAAAGCAACAAATGCAAATGATCGTCTCCAGTTAATTCCTCAGATCAGTCCTACAGTGCAGGGTTGTCTGTTGTCCCTACTctactgtcttcagttcctacCTGTGTTTAGCCCATATTCAACCGCATTTGGCAGTCAAACATGAAAGACAAAGCCATGTGCATgaattttacagtaaagtaaatAGATACCATTTTTGACTATTACCGTATCATATCAGAACCTAAAAAGCCAAACAGTGCACATCCACAAGCATCAACTATTGAGGTCAGTATATGGCCAGTAACTCACAAGAAATAAACTGCAAGCGACATGATCAAAATTTCGCTTTCTAGTGTGAGTGCAGAGTAATAGGTTGTTAGGAAGTGAAAACTCTACATAAATCCACAAACTCAGCTAAACATTACAGGTCACAGAAACACAGGTACAGTCTTTAGCTATATGTGACAGATAACcttacaattttatttcttatccTGTCATTTCACTGTGATATTTGTAAACTAACTCGCTGCTCACGGTATTGATTTGTGTCCTCCAGAGTTCGATCATGACATCTTTAACCCCTTAAAGTTTAATTATTCAGCTATTATtccttaaagcatattattcagtaactacagtgaaattaaTAGAAAAGCTATGTAGTCACTGGggtcagaaaagtgtatttggGGAACTTAAATAGTTATGTCTCATAATTTTGTGTTACATCTActgttttagatattttatatgTGTTTGCCTTAGGTGGTGTCTGAACATATGGAATGGGAGAAATTATACCTCTGGAAATTAAAActattaaacacactttcataataaacattaaattgattttaaCAATTTAGCTTGGTTTAATAGAGATTTTTCTTTCGGCATTTATATGAGCAGACTTTCTGTAATCCTCATGACAAAACTGTTGCAGTGACAGAACTCAATCTCTCAATAGTTAGCTGAAACAGGAGGCTTTAGGGCAGTGTTAAGGAAATAGAATTAAATGATCAACAAGATCATGCTCTGagcagtgtgtttgttctgtaaTACTACTATCAGACACTTTTGGGGGGTTTTTCCACCATCTCAAATGGGTCCTGTTCATGGTTGTCTATGATGATGTCTGTGTATAAATGCATGTTTCTTCTTTCACATAGATGTACAAATTTCCCAAGAAAAAGCACAGTCGAGAAGTAGACAACATCCTGTATTTTTCTATTGTGAAAAGAAGTAGTATGGATGTGTTAGTTATATACCGGATGTGTTAGTAAGAATTACAAGAATTGTCATTATGACATATTGTGTGCTACTCATTGTGTGTCTAGTTTCTGATGATTCATCTTGTGTTTTGAAGGAGAAGAGAGGTGGTGAAGTCTAGAAACTGCACTCCCTCTCACCATTTCATTGTGACATTTTAAGCCATTGCATTTTTGCATAAGGACAACAATCAAAGCAATGAAAATGTGCTCAGATTCCCATTTGTCCTAAATAAACTTTGTATACCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404149.2 lncRNA upstream 230155 10998040 ~ 11001838 (+) False LOC113541116
TU391308 lncRNA upstream 230157 10998030 ~ 11001836 (+) True LOC113541116
TU391307 lncRNA upstream 237740 10993824 ~ 10994253 (+) True G330350
TU391210 lncRNA upstream 243941 10986708 ~ 10988052 (+) True G330260
TU391208 lncRNA upstream 260375 10971195 ~ 10971618 (+) True G330259
TU391437 lncRNA downstream 46008 11354620 ~ 11355001 (+) True G330457
TU391431 lncRNA downstream 46074 11354686 ~ 11355001 (+) False G330457
TU391617 lncRNA downstream 74824 11383436 ~ 11383662 (+) True G330616
TU391882 lncRNA downstream 517527 11826139 ~ 11826390 (+) True G330856
TU391895 lncRNA downstream 565380 11873992 ~ 11874192 (+) True G330869
XM_026938041.2 mRNA upstream 248778 10874209 ~ 10983215 (+) False acad11
XM_034298145.1 mRNA upstream 248778 10874209 ~ 10983215 (+) False acad11
XM_034298146.1 mRNA upstream 248778 10874209 ~ 10983215 (+) False acad11
XM_026938040.2 mRNA upstream 261167 10874209 ~ 10970826 (+) False acad11
XM_034298147.1 mRNA upstream 261692 10874209 ~ 10970301 (+) False acad11
XM_026937985.2 mRNA downstream 61651 11370263 ~ 11374505 (+) True chmp4c
XM_026938251.2 mRNA downstream 69689 11378301 ~ 11382806 (+) True LOC113541334
XM_026937960.2 mRNA downstream 82697 11391309 ~ 11486305 (+) True asap1b
XM_026937973.2 mRNA downstream 180304 11488916 ~ 11553217 (+) True fam49bb
XM_026938296.2 mRNA downstream 408803 11717415 ~ 11743711 (+) False ankha
XR_004576967.1 other upstream 247784 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other upstream 247784 10874209 ~ 10984209 (+) False acad11
XR_004576968.1 other upstream 248778 10874209 ~ 10983215 (+) False acad11
XR_004576969.1 other upstream 248778 10874209 ~ 10983215 (+) False acad11
TU391206 other upstream 257078 10973264 ~ 10974915 (+) True G330257
TU391847 other downstream 429546 11738158 ~ 11748559 (+) True ankha
XR_003404147.2 other downstream 753720 12062332 ~ 12156787 (+) True prkag2a
TU392341 other downstream 1398327 12706939 ~ 12712678 (+) True G331263
TU392569 other downstream 1949282 13257894 ~ 13258416 (+) True G331476
trnat-agu_17 other downstream 2076589 13385201 ~ 13385274 (+) True trnat-agu_17

Expression Profile