RNA id: XM_034298161.1


Basic Information

Item Value
RNA id XM_034298161.1
length 1963
RNA type mRNA
GC content 0.51
exon number 11
gene id spag6
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17074213 ~ 17085476 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aatcacacacactcacacactatggacaatttggaaatgccacaATCAGCCtgcaatgcatgtctttggactgggggaggaaaccggagtacccagagaaAACCCCTGATGCAGGCAGAGAACATGccaattccacacacacagagcggagGCAGgcttcgaacccccaaccctgaagTTTTTGAGCAGTACCagaaagaaaggatgaagtTCGTGCAAACAGTTTCAGAGCTTGCAACAAGACCTCAGAATATCGAAACACTTCAAAATGCAGGTGTGATGTCCCTCCTGAGGCCTCTCCTCCTGGATGCGGTCCCGACTATCCAGCAGACGGCCGCTCTGGCTCTTGGAAGACTCGCCAGCTACAACGATGACCTGGCCGAGGCTGTGGTGAAGGGAGACATTCTGCCTCAGCTCGTTTACTCTCTGGCCGAGCAGAACCGCTTCTATAAGAAGGCGGTGGCGTTTGTTCTCCGTGCCGTGGCGAAGCACTCACCCGAGCTGGCACAAGCCGTAGTAGACTGTGGTGCCCTCGATGCTCTCGTCGTCTCTCTGGAGGAGTTCGATCCTGGAGTGAAAGAGGCTGCTGCATGGGCTCTGGGCTACATCGCTCGCCACAACGGCTCATTGGCTCAGGCGGTGGTGGACGCAGGCGCTGTTCCTCTGCTCGTTCTCTGCATCCAGGAGCCTGAGATTGCCCTGAAGAGGATCTCTGCTTCAACGCTGAGCGACATCTCCAAACACTCGCCAGAGCTCGCACAAACTGTAGTGGACACTGGAGCCATTGCGCACCTGGCGCAGATGACCCTGTACCCAGACGCCAAACTGAAGaGGCACGTGTTCTCGGCTCTCGGCCAAATCTCCAAGCACTCTGTGGATCTGGCAGAGATGGTGGTGGAGGCTGAGATCTTCCCTGCTGTACTGGCCTGCCTTAAAGACCCAGATGAGTATGTGAGGAAGAACATCAGCACGCTGATGCGAGAGATCACAAAACACACCCCTGAGTTATCCCAGATGATCGTGAACGCTGGAGGTGTAGCCGCTGTGATTGATTATCTAGGGGACTCCAGAGGGAATGTGCGATTGCCTGGTATCATGATGCTTGGCTACGTGGCTGCACACTCGGAGAACCTCGCCATGGCTGTCATTGTATCTAAGGGTGTACCACAGCTGGCTATCTGCCTGGCGGAGGAGACGGAGGATCACATGAAGGCTGCAACAGCTTGGGCACTGGGGCAGATCGGCCATCACACACCTGAGCACGCAAGAGCTGTGGCCATGTCCAACGTGCTCCCCAAACTGCTGAGTCTCTACCtggacacacacagctctgaggACCTGCAAGTCAAGGCAAAGAAAGCTTTAAAGAGCATCCTTCAGAAGTGCACTTACCTTCCAGCACTGGAGCCGCTCCTCTACGAAGCTCCCAGCAATGTTCTCAAACACGTCATCTGCCAGTTCAGCAAGGTTCTTCCACATGACAGTAAAGCACGGAAGTTGTTTGTAACTAGCGGAGGACTGAAGAAGGTGCAGGAAATTAAAGCCGAGCCCGGTTCTGCTCTGCAGGAGTACATCAACGCCATCAACGCCTGCTACCCCGAGGAGATAGTCAGGTACTACTCACCTGGATATTCAGAAGCACTACTGGAAAGGATCGAGAACTATCAGCCTGTTTAGGACAGGAAGCTCATCTCCACGATTAGCACTCTTTACGGCTTTATTAAATACTCTCATTAAATTCATGGCTCTGTGATATTTGCCATTAGCATTTGATTATTGACTCTGTGTCGCAGCACTGTATGTAGTATACTGTCAAATgggattttaatttttttcaaagtaaaaatatgtttttatgttttcacacttttattaataaacaacaagaAATCACTTAAAATTGAGAAATAGAGGAATAGTAGGTTCTAAAGCATCAATAAACCCAGTGAGTgccttttattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394629 lncRNA upstream 176358 16893006 ~ 16897855 (+) True G333244
XR_003404172.2 lncRNA upstream 184052 16888937 ~ 16890161 (+) True LOC113541357
TU394631 lncRNA upstream 184484 16888906 ~ 16889729 (+) False LOC113541357
TU394614 lncRNA upstream 244234 16732916 ~ 16829979 (+) False G333232
TU394762 lncRNA downstream 100653 17186129 ~ 17186675 (+) True G333360
TU395018 lncRNA downstream 277395 17362871 ~ 17363075 (+) True G333548
TU395063 lncRNA downstream 360709 17446185 ~ 17447043 (+) True G333582
TU395113 lncRNA downstream 455161 17540637 ~ 17541761 (+) False rnf6
TU395303 lncRNA downstream 582160 17667636 ~ 17667844 (+) True G333787
XM_026937977.2 mRNA upstream 59419 16985047 ~ 17014794 (+) True plcd1a
XM_034297855.1 mRNA upstream 59419 16985412 ~ 17014794 (+) False plcd1a
XM_026937976.2 mRNA upstream 59419 16986914 ~ 17014794 (+) False plcd1a
XM_034297857.1 mRNA upstream 113367 16953684 ~ 16960846 (+) True acaa1
XM_034298105.1 mRNA upstream 255774 16805650 ~ 16818439 (+) False LOC113541068
XM_026938111.2 mRNA downstream 734 17086210 ~ 17098345 (+) True gars1
XM_034297884.1 mRNA downstream 14688 17100164 ~ 17109773 (+) False hhatlb
XM_026937901.2 mRNA downstream 15694 17101170 ~ 17109773 (+) True hhatlb
XM_026937903.2 mRNA downstream 26292 17111768 ~ 17115776 (+) True klhl40b
XM_034298269.1 mRNA downstream 77524 17163000 ~ 17171598 (+) True sec22c
TU393912 other upstream 1507550 15566175 ~ 15566663 (+) True G332636
XR_004576981.1 other upstream 1809626 15251635 ~ 15264587 (+) False si:ch73-173p19.2
trnat-agu_17 other upstream 3688939 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 3815797 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 4361535 12706939 ~ 12712678 (+) True G331263
TU394735 other downstream 21996 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 21996 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 199606 17285082 ~ 17300011 (+) True G333388
TU394792 other downstream 201684 17287160 ~ 17302004 (+) False G333388
TU394797 other downstream 201684 17287160 ~ 17295054 (+) False G333388

Expression Profile