RNA id: XM_026938128.2


Basic Information

Item Value
RNA id XM_026938128.2
length 3077
RNA type mRNA
GC content 0.47
exon number 22
gene id cul1b
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13021167 ~ 13042516 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGTTTGAGGACATGGACActaggggagtgtgtgtgtgtgagagtgtgagtgtttgAGAGCTCTGCTCGCTGCCTCAGTGAAGCTAAAGGGCGGCAGAGGAGCTAAGAGGAGCTAGTTGAGCTGCTTGCACAATGGTCACATGGTGAAGCTGGTGAACTCAGCACACGTATCTGAACTGGCCACCATGGAGTGTTTGTGAAACACTGACATTTTCTAAGTGGAAGGCAGAAAGGAGTGAAGATAAGCAGGCCAGTGACGAGACAATGTCGTCCAACAGGCCCCAGAACCCACACGGGCTCAAACAGATTGGGCTGGACCAGATCTGGGATGACCTGCGGGCAGGGATTCAACAGGTGTATACGCGACAGAGCATGGCCAGGTCCCGCTACATGGAGCTCTACACACATGTTTACAATTACTGTACCAGTGTCCATCAGTCAAACCAGGCAAGGGGTGCAGGCATTCCCCCCACCAAACCCTCCAAGAAGTCCCCCACTCCAGGGGGAGCACAGTTTGTTGGGCTTGAACTTTACAAAAGACTGAAGGAGTTTCTAAAGAGCTATTTAACAAATCTTCTGAAGGATGGGGAAGATCTGATGGACGAAAGCGTTCTGAAGTTTTACACGCAGCAGTGGGAGGACTACCGCTTCTCCAGTAAAGTGTTAAATGGGATTTGCGCCTACCTCAACAGACACTGGGTACGCCGGGAGTGTGACGAGGGGCGGAAAGGAATTTATGAAATCTATTCGCTTGCCTTGGTGACATGGAGAGAGTGTTTATTCAGACCTCTAAATAAACAGGTGACGAATGCAGTACTGAAACTcattgagagagaaagaaacggCGAGACTATTAACACCAGGCTGATCAGTGGAGTTGTACAGTCATATGTTGAACTGGGCCTGAATGAGGACGATGCCTTTGCTAAAGGACCCACATTATCTGTATACAAAGAGTACTTTGAGAGCCAGTTCTTGGCTGATACAGAACGCTTCTACACAAGGGAAAGCACAGAGTTCCTCCAACAAAACCCTGTAACTGAATACATGAAAAAGGCAGAAGCACGGCTGTTAGAGGAGCAGCGGCGGGTTCAGGTTTACCTTCATGAGAGCACACAAGACGAGCTGGCTCGCAAGTGTGAACAGGTTCTCATAGAGAAACACCTGGAGATTTTCCACACAGAGTTCCAGAACCTTCTGGATGCTGACAAGAACGAAGATCTGGGCCGAATGTACAACCTTGTCTCACGCATCACGGACGGTTTAGGGGAGTTGAAGAAACTCTTGGAGACGCACATCCACAACCAAGGCCTGGCAGCCATTGAGAAGTGCGGGGACTCAGCTCTCAATGATCCTAAAATGTATGTACAAACAATATTGGATGTGCACAAGAAGTACAATGCATTGGTGATGTCGGCGTTTAATAACGACGCAGGCTTCGTGGCTGCTCTTGATAAGGCCTGTGGGAGATTCATCAACAATAACGCCATTACAAAGATGGCTCAGTCCTCCAGCAAATCTCCAGAACTGCTGGCCAGATACTGTGACTCCTTACTGAAGAAGAGCTCAAAGAACCCTGAGGAGGCGGAGCTGGAGGACACGCTCAACCAAGTGATGGTGGTTTTCAAATACATTGAAGATAAGGATGTTTTCCAGAAATTCTATGCCAAAATGCTGGCTAAGAGGCTGGTTCACCAGAACAGTGCCAGTGATGATGCCGAGGCCAGTATGATCTCCAAATTAAAGCAAGCATGTGGTTTTGAGTACACCTCCAAACTACAGCGCATGTTCCAGGACATCGGTGTCAGCAAGGACTTGAACGAGCAGTTTAAAAAGCACCTTTCAAACTCTGAGCCTTTGGACTtgGATTTTAGCATTCAAGTTCTCAGCTCAGGATCCTGGCCTTTCCAGCAGTCATGCACATTTGCATTGCCTTCAGAGCTGGAGCGCAGTTACCAAAGATTCACAGCTTTCTATGCCAGCAGACACAGTGGGCGCAAACTGACGTGGCTCTACCATTTATCCAAGGGCGAGCTAGTCACCAACTGCTTCAAGAACAGATACACCCTACAGGCATCCACCTTCCAGATGGCCATTCTGCTGCAGTTCAACACAGAGAACAGCTACACCGTTCAACAGCTGGCCGACAGCACACAGATTAAAGTAgaTATTTTGGTTCAGGTTTTGCAAATCCTGTTGAAGTCCAAGTTGCTGGTTTTGGAGGACGAGAATGCAAACGTCGATGAAATGGACTTCAAACCTGATACACTCATAAAGCTTTTCTTGGGCTATAAAAACAAGAAGTTGCGGGTCAACATCAACGTGCCAATGAAGACGGAGCAGAAACAAGAGCAGGAgacaacacacaaaaacatcgaggaggacagaaagctcCTCATACAGgctgCTATCGTCAGGATTATGAAGATGAGGAAAGTACTGAAGCACCAGCAGCTCCTTGCAGAAGTACTAAACCAGTTGTCGTCACGCTTCAAACCTCGAGTCCCTGTCATCAAGAAATGCATCGATATTTTGATTGAGAAGGAATACCTGGAGCGCGTCGACGGCGAGAAGGACACCTACAGCTACCTGGCTTAAACACTTACTTCTAAAGTCCGACTCAAACATCATTCCTGAAGCCTCTTGGCTTTCATTATAAGGGATGCACTCAAGGAACTGAACACTGGAGCTCCCTTTAAATGCAGGGGTCTAACACTGCTGTTCTCCTGAAGTCTCGGCTCAGCCGCTCAGGATCTCCTTCGCCCTTTCCATCTGTAAATAAGTCGCCGTACCCTTAGTGAGACCTGACCTGGCTTCAGGGTTGCATGTTTCTGCCTCTCATCTGAAACACATAGctcattaatttaatattaaattgaaTGACTTTGGACTGACTTTAAAAAGGTTATTATTGCATCTACGAAGACAAATCATGAATTCAGGCGGCGctttatgaatatatttgttaaactggcCCTTGTAGAGTTGTGTAAGCAGCCTTTATCCGCTCCATCATTTGTATAGTGTggtttgttttataaatgtcatgaataaactttaaattttctgtaagTTGT

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG:

id description
K03347 CUL1, CDC53; cullin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404159.2 lncRNA upstream 219042 12797361 ~ 12802125 (+) True LOC113541232
TU392360 lncRNA upstream 279489 12741117 ~ 12741678 (+) True G331280
TU392357 lncRNA upstream 287464 12732809 ~ 12733703 (+) True G331277
TU392342 lncRNA upstream 308489 12710519 ~ 12712678 (+) False G331263
TU392238 lncRNA upstream 570820 12448762 ~ 12450347 (+) True G331161
TU392425 lncRNA downstream 1799 13044315 ~ 13049452 (+) True G331342
TU392426 lncRNA downstream 8526 13051042 ~ 13051859 (+) True G331343
TU392427 lncRNA downstream 11769 13054285 ~ 13054519 (+) True G331344
TU392428 lncRNA downstream 14002 13056518 ~ 13057241 (+) True G331345
TU392432 lncRNA downstream 18819 13061335 ~ 13061659 (+) True G331348
XM_026938097.2 mRNA upstream 6058 12766560 ~ 13015109 (+) True LOC113541231
XM_034298168.1 mRNA upstream 308516 12710626 ~ 12712651 (+) True ccl34b.4
XM_026938277.2 mRNA upstream 313164 12706939 ~ 12708003 (+) True LOC113541349
XM_026938086.2 mRNA upstream 522121 12428457 ~ 12499046 (+) True hs6st1b
XM_026938147.2 mRNA upstream 786984 12181785 ~ 12234183 (+) True bcl2a
XM_026937922.2 mRNA downstream 232144 13274660 ~ 13278025 (+) True skida1
XM_026938109.2 mRNA downstream 279821 13322337 ~ 13334525 (+) True armc3
XM_026938148.2 mRNA downstream 293822 13336338 ~ 13341661 (+) True msrb2
XM_026938165.2 mRNA downstream 301230 13343746 ~ 13350216 (+) True c8g
XM_026938162.2 mRNA downstream 331048 13373564 ~ 13379652 (+) True klhl15
TU392341 other upstream 308489 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 864380 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 1272608 11738158 ~ 11748559 (+) True ankha
XR_004576969.1 other upstream 2037952 10874209 ~ 10983215 (+) False acad11
TU392569 other downstream 215378 13257894 ~ 13258416 (+) True G331476
trnat-agu_17 other downstream 342685 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 2209119 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 2523659 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 4064956 17107472 ~ 17110027 (+) False hhatlb

Expression Profile