RNA id: XM_026938130.2


Basic Information

Item Value
RNA id XM_026938130.2
length 8703
RNA type mRNA
GC content 0.46
exon number 32
gene id tnikb
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20376679 ~ 20437831 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTGCGCGTCCGCGCGCTCCGGTTCTTTTTCGCCttagcaaggaaaaaaaaaaaaccgtcACGAGCCAAGGACCGATCCGCGCGCGCCAATGTAGCACCGAAATCGCTCGAGCTGCCGTCGGTCGTGTGGAAGCAGAGAAGAAACCGGGGGACTGCAGCCATCATCCggggaacagagagagagagggagagacagagagagagagagagagagagagagaatctgatGTGCTGCTGCTGAGTCTGAGGAATTTCGGAATTTCTCCAGCTCCACATGCAGTTTCCGACATTTGACTTTAATTGTGCAGTTTTTTAGCGACAGTAAAAAGGACGGAATCATGATGGCGAGCGACTCTCCGGCCCGGAGCCTGGATGAGATCGACCTGTCGGCTCTGCGGGACCCTGCGGGAATCTTCGAGCTGGTGGAGCTTGTGGGAAACGGAACATACGGCCAAGTGTACAAGggcCGCCATGTCAAGACAGGCCAGCTTGCTGCAATCAAGGTCATGGACGTCACAGGGgatgaggaggaggaaatCAAAGCGGAGATTAACATGCTGAAAAAGTACTCGCACCATCGCAACATCGCCACGTACTACGGAGCCTTTGTCAAGAAGAACCCACCGGGCGTCGACGACCAGCTGTGGctggtgATGGAGTTCTGTGGTGCCGGCTCAGTCACAGACCTGATAAAGAACACTAAAGGAAACTCGCTGAAGGAGGAGTGGACGGCTTACATCTGCAGAGAAATCCTCCGAGGTCTGACTCATCTTCACCAGCACAAAGTCATCCACCGTGACATTAAAGGCCAGAACGTCCTGCTGACTGAGAACGCTGAGGTCAAACTGGTGGACTTTGGTGTGAGTGCACAGTTGGACCGCACCGTGGGCAGGAGGAACACGTTTATCGGCACGCCGTATTGGATGGCTCCTGAGGTCATCGCCTGTGATGAGAATCCAGACGCCACGTACGACTTCAAGAGTGATTTGTGGtctttaggaattacagctatcGAGATGGCAGAAGGAGCGCCACcTCTGTGTGACATGCACCCGATGCGAGCACTCTTCCTCATTCCCAGAAATCCGGCTCCCCGACTCAAGTCGAAGAAGTGGACGAAGAAGTTCCAGTCGTTTATTGACAGCTGCCTGGTGAAGAACCACACGCAGAGGCCCAGCACGGAGCAGCTGCTTAAACATCCCTTCATCCGAGACCTGCCTAATGAGCGACAGGTCCGCATCCAGCTCAAAGACCACATCGACCGCACcaagaagaagagaggagagcgAGATGAGACGGAGTACGAGTACAGCggcagcgaggaggaggaggaggagcgggACATCGGAGAACCCAGCTCCATCATCAACATCCCGGGCGAGTCCACTCTGAGGCGGGACTTCCTGCGTCTGCAGCTGGCCAATAAGGAGCGCTCCGAGGCCCTGCGCCGACAACAGCTGGAACAGCAGCAGAACGACGAGCACAAGCGCCAACTCCTGGCCGAGAGACAGAAGCGCATCGAGGAGCAGAAGGAGCAGAGGAGGAGGCTGGAGGAGCAACAGCGTCGGGAGAGAGAGCTCCGCaaacagcaggagagagagcagcGGAGACGCTATGAGGAGATGGAGCAGCTacggagagaggaggagaggaggcaTGCCGAGAGggagcagGAGTATAAGCGGAAGCAGCTGGAGGAGCAGAGGCAGGCGGAGAGGCTTCAGAGACAGCTCCAGCAGGAGAGAGCTTACCTGGTTTCTctccaacagcagcagcagcaggaaccTCGACCTGCCGAGAAGAAGCAGCTCTATCACTACAAGGACTCGGTCAACCCCAGCGACAAACCCGCCTGGGCCAAAGAGGTCATGAGACGAGCCCAAAGTAACTCCCCTCGTCTGCCTACAAAGAACCAGTACCATGAGGAGGCGCGGCTTTcgcacctcctcctcctccctgaCCACGCCTCCAGCAACCTCCCTGCCCGCCCCCCGTCCTACCCAGCCGCCGCCCCCTCCCACGCCCAGAGAGAGAGGGCCGAGATTCAGCTCAGGCAGCTGGGCACCAGCGCCAACATTCCCAAGATCCGGGTGTCCTGTGAGCCAGATCCGGCTCAAATCAGCCAGCCGATTCCAGGGCAGGGCCAGGAGAACCGTGGGCGGAGCCCCGGACGATCCGGAGCGTGGGACAGTGAGGTGGAGGAGCGTTCCAAACTAAACCGACAGAGTTCTCCAGCTCTGCAGCACAAAGTGGCCAATCGAATCTCTGACCCGTCGCTGCCTCCGCGCTCCGAGTCCTTCAGCAGCGGTGGCATCCAGCAGGCTCGGACTCCGCCCATGCACCGCTCCGTCGAGCCCCAGATGGCTCACTTGGTCTCGGTGAAGTCTCACGGTTCCTCGATGACGGGCTCGCAGTCTCTGCATGATCAGTCTTCCCAGGGCGTCTCAGCTTTCCAGGAGAGTCTGTCGCCCCACCGGCCCCCGATGCCCCGGCAGAACTCGGACCCCACCTCAGAGACTCCCATGCCTCCACCTCGCATCACGAGCCGCGATGACAAGTTCGACCGCAGCTCCTGGCtgagacaggaagaggaagttCCACCCAAGGTTCCTCAGAGGACGACCTCTATATCTCCTGCTCTGGTTAGAAAGAACTCACCTGGGAATGGACCTGGAGGTCTGGGACCGAGGCCGGGTTCTCACCTCATCCGagccagCAACCCAGACCTGCGGGTTTCCATGGAGCCCGGACTCCCGAGGACGAGCAGCGGCAGCTCCTCCAGCTCCAGCACTCCGAGCTCTCAGGGCGGCTCCAGCGAGAGGAACCGGGTGGGAGGATCTGGAAAACCTGAGAGTTCTCCGGCCGTTTCCCAGGAGACCAAACACAAAAGCCAGGAGGAGAGCAGGGAGGTGACGAGACCCAGCCGACCTGCTGATCTCACTGCTCTGGCCAAAGAACTCCGGGAGTTGCGCTCTAACGAGGAGACAAACCGGCCGCCCGTCAAAGTGACCGATTACTCATCGTCCAGTGAGGAGTCAGAAAGCAGCgaagaggaggaaggagagggCGGAGCTCACGATGGAACAGTGCCAGTCAGTGACATCCCTCGCATCATGCCGTCAGCCGGTCAGGGTGGGAATGAGCCGTTCGGAGCACTGGTAGGTCCAGAGGATTCCCATGACGAGTCTTACGGCAACAACTCTAAAGACAGCACCCTGATGATGAGAGAGATGTTTGGGGAAAGAAAGCGCTCGGGTCATGCCGAGAGCAACGGTTTCCCTGGTAACGCCAATCTTCCTGATCTAGTGCAGCAAAGCCACTCCCCCTTGGCCACGCCCAGCGAAGGCCCAGGGCGCCACTCCAGTCTGCTTGGGCAGGACCTGGACTCTGTGGCTGAATACGGGAGCGGCTCTAAAGCCTCCTTCACCCCGTTCGTGGATCCGCGAGTGTACCAGACTTCACCAACTGAAGAAAACAGTGAGAACCCAGCAGCAGCTCTCTCGGTTGATGAGCTGCTGAGGCACgagcaggaacaggaacaaGCTCGGCTCAATGAGGCTCGGAAGATCTCCGTCGTCAACGTCAATCCCACCAACATCCGGCCGCACAGCGACACGCCTGAGATCCGCAAATACAAGAAACGCTTTAACTCCGAGATCCTGTGTGCTGCTCTGTGGGGCGTGAACCTGTTGGTCGGGACTGAAAATGGACTGATGTTGTTGGACCGCAGCGGTCAGGGGAAAGTGTACAACCTCATCAACCGCCGGCGCTTTCAGCAGATGGACGTGCTGGAGGGCCTCAACGTTCTCGTCACCATCTCCgGCAAAAAGAACAAGTTGAGGGTTTACTACCTGTCATGGCTCAGGAACCGGATCCTCCACAATGACCCTGAGGTGGAGAAGAAGCAGGGCTGGACCACCGTGGGCGATCTGGAGGGCTGCGTTCATTACAAAGTCGTGAAATATGAGAGGATCAAGTTCTTGGTGATTGCCTTGAAGAATTCGGTGGAGATTTACGCCTGGGCTCCGAAACCGTATCACAAATTCATGGCTTTCAAGtCCTTCACCGATCTGCAGCACAAGCCTCAGCTGGTAGATCTGACCGTAGAGGAAGGTCAGAGGTTAAAGGTCATCTACGGCTCCAGCGTTGGGTTTCATGTCATAGATGTCGACTCGGGGAACCCGTATGATATCTACATCCCATCGCACATTCAGGGCAGTGTCACCCCTCACGCCATTGTGGTGCTCCCCAAGACCGACGGGATGGAGATGCTTCTGTGTTATGAAGATGAGGGAGTCTATGTGAACACATACGGCAGAATCACTAAAGACGTGGTGCTACAATGGGGAGAGATGCCCACCTCTGTTGCCTACATCCACTCCAACCAGATCATGGGATGGGGAGAGAAAGCCATTGAGATCCGTTCCGTGGAGACGGGACACCTCGACGGAGTTTTCATGCACAAGCGAGCTCAGCGACTGAAGTTCCTGTCTGAGAGAAACGACAAGgtcTTCTTTGCCTCCGTCCGATCAGGAGGCAGTAGCCAAGTTTTCTTCATGACCTTGAACAGAAATTCCATGATGAACTGGTAAACCCCGCCCACACACCTGCCCCCCCACACCCCCACGGGCCCCACCGCACGCCCCCCCCTAAGGTGTCTCTGTGGACGTATTCTGTTTTTCTAAAATGATGGGGTGGGAGGGAACGAGAAGAACCCACAGTGTGTGGAACCGCAGGGCCGCTTTTGAGAGTAAAtacttttagaaaataaataaataaaataaaataaaggccGGGAGCCGCTCCAGAGAGCCGAAGTTCATCTCACATCCACACGAAGCTCCGACCGCCGAGAGAAGAACAACCACCTCCTGTACCCAGAATTCCTTACGGCTCTTACCTGTGGGGTTCTCGTTTTTATCTGACTAACGGATTTTTGGAGGAGAGCAGAGACGGACAGAACTGCTAACTGAGACGGCCGAAAATCAAGAAAATACATGATATTGTAACTGTTTAGACACTTTCAACACAATAATTTATTGCTGTTGGTTGGACAAAACAATTCTGTGgagaggtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctttcatgAATTTATTTGATCACTTTATGTTACTGCATTTCATCACACTGTAACTGTACAAAGGTTTATGTATTGTTTGTATGTTCTtagtgtatttctgtgtgtgtgtgtgtgtgtgtctccgcATTATCCGTCAATACGAAAAACATCACACAATAGTTAAGACAAGTCCGGATGTGTGGATGTTTTATACAGTACGTTACAGCAGAATTTTGGGAAATCATTCTGGAAGATAAAGCTCCGTTTCTCATAATTTCATAACGATCCCTATGATGGATTTTAGCTTTTTGGATGTCGTTGCTTAAGTGCAATAAAGACCATGAGATATCGTTTCGGTGTGTGGGTGGACGGGGTTTTAGCTCAAACCTGAACAGCGTTCCGCCAGTCTGAAGCTGTGACTTTCAGAGCTGTGTTAGAGGTgtatttgaggtttttttttaaataatccttTAATAAAATTGGTCACGCAACGCAgatgtgatttgtttttttctcagattGCGTGACAACAAAGGAATGAGTTTGGTGCATTGAGCTTCCTCTAAACCTACCTCATTTCTTTCCTCCAGTCATTcgatcacaagtttatattcaCTCATGACGTCacgtaattattaataaaataataattcagacAGGGCTTGAATTAAAAGGCACAGGAATCTCAATTCAATAcagtttttattataaatttattctttattcatcatgatttttgcttttttgtgatttttttttaaagtgtgcaCTGTTGCtagttttaatataaaaataacgcGTTTCAGTTTGAGCTGTGAGGATGAATTTCACTGTTCAAATGCGACTcgaatgtttataatatttacacattcagaagcaaaaaaaaaaacaaaacaaatgaaagtttaaaacccgtaacaaaaaaatgatgcattttattacaatgttttgtgcataaaTGCTGAATAATTTCTTGAGCATCTTGGTGCATAAAAGAAAGCGATTCTTTTTGCTTCATCtcaaatattgaaaataaagatcaataaatacagtaaagttGAAGATCAAaggctttatatattttaacaatacACGTGAAACTTGGATTCTCTTAAATTTCTGCAGCATCATAAAAATCCACTTGCAATCacattttaagatttaagagtcaaaaaaaaaaaacggttaaTTGTGGAATTAGACGACCCTTTTAACTAAAGCAGAGTAAAAACCAGTGccaaaagtataaaaagtataaaaagtaaGCATTAGTTGTTTACTGCAAAGTTGAAACAAGGGCTTTAAAGCATGaaacaatgtaaaaaatttaatatttattattagttgcTTTTGGTATCAGGGTGATGttcacattttctcacagaAAATATATTAGTTTCCAGTGACAGAACGCAAACTGGGTATGAATTCAGACAAAAAATCTACTGAGAATTATCGAGTTGTTGGTGCCGTGACCCGGATGTGAAAACTGTCAacaggaggaaaagagaaagaagtgcAAAAGGTCAAATAGAATCAGGAGGAAAAGCTGCAGCGAGCatgaaaaagtgtgtaaaagtgtgaagAAACTGATTAGAGGgcaattttattttcaggtcCAGTTACAGGCGCTATCTGGAGCAGAATATTACACCTACACAACCCgttatatttcataaataaaccataaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttctgcatgtCTGTACCTGTACATTTGGGATTTCACCTTCAGTTTTACTTTCACATGAACATAAAACTGTGATCTGACATTAAAACgtctcattttttattattcatagaAGTTCATGTTTCACTTTTTCATCTCACTTTtgtcttaattttaatttaattaatcgCTTTCATCACTAAGTCCATCGCTTGATATCGAGTTTCTCGCTAGCTTGTTAAATTTGACACCAATTTATGTGAAATTACTCCGATTTCTTATTCGGTTATTTAACAGCTGAAGCAGAGCTAAAATATGTCACGTCCATTtagattaatatatatatatatatatttttaaatatgcgTTTTAGTGATTTATTCTTAATTTTTGAGTAAATTGAAGCTGCTATTTAACTATTTGGCTCTGaaatcaggcaaaaaaaaaaatcctgtaaaaatacagaataaaagtTGATTAGCAGTATAATAAATTACACTGGCGTATAATTCTGTAAATGcaattacaataaaatgatgaattttaacaattatttataattatttataatcttcCAAACCTGACTCCAagcaattttccatttttataaattatttaatgacatttcagcAAACATGCTTAATGCCGTTATGGAAACTAAAAATGTACAAACATGTATAGtgaaatatcacattaatgaaataaatattaaatatacatacagcCTGGACTTCGAATTTATATGCaaacaatattataataaaatttcttAATGTAAATTTTATTGCAATTCTATTTACAGAATTACAGGCTACTGTTATTTCTACTGTGATGACTTTTTCCTTGCAAGTTttcaatattttacttttattttagtttattcacttcacagtactttttttttaatgataatttgTTCAATGCTTCCAAAACATGAACGttactataaaatgttttaaaaataacacttttGAAAACCCAGAATTAGATCTGAGGTCTGATCTCGTCTAATGTGCGTTAAATTTCGAGTCTGctgacttttattattttaatgtaaagcaACTTTTTGGTTATTTTAACGTAAAATGTCGATCCCTGATTCTTTATAGAATAATTATCTAACAGAgaccccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaactccacatCAGACTCGCTTGACATTGTTATTCTGATCGGATTTATTTATCGGTTTGTACAGTACACTTCTGTTTGTCATTGTGTTTGGAAGCGACAGTGTTATTACTGATTCTTTTGCGAAGGGATTTTTTTCTCTAGCTGTATTTTGGATTAGCTCGTTGGTCTGAAAGTGCTGAAATCTATATTAGAATGTCAGAGATGTTTAATATCAGTGCTTTATGTAATATCACTTGATCCTCTTTCTCATTTTATCCCGGTACTGTTTAacgcttttttcctttttctttataaattcaCTGCTGAATTATAGCCAGAATGATGTATTGATACTTCTTTTGTATGGTGACATTTTCCTTTTCctggtttgttttttggggAAAAGCGCTCGTCATGTTTATATCTGATGGAAAGCCTGAAAGGAAACAATGCCGATGTAAATGAAACGTAAACCTGACACTCGGTCGTGTTAGGACAAAGCTAGGATTATTAGCAATAAAGTGTATCAAGgagttttgttaaaatattttttctggtATTTAATTTCTGTCTGAATTTGGtagaaaaaatattcaaaatgttgaaaatgttgaaatgtcCAGAATTTGGGATGCAGGATGTCGGGTTCTGAGTGATGCAGATTATACACCGATATATTCACCGTTTGTTCCCATGTAACATAAAGCATTAGaactttgctgttttttaataaatcgaTGTATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397267 lncRNA downstream 182298 20121516 ~ 20194381 (-) False G335498
TU397272 lncRNA downstream 184893 20138175 ~ 20191786 (-) False G335498
TU397270 lncRNA downstream 184893 20159122 ~ 20191786 (-) True G335498
XR_003404154.2 lncRNA downstream 203755 20167317 ~ 20172924 (-) True LOC113541188
TU397218 lncRNA downstream 315520 20060024 ~ 20061159 (-) True G335460
TU397629 lncRNA upstream 122343 20560173 ~ 20564445 (-) False stag1b
TU397652 lncRNA upstream 222798 20660628 ~ 20661829 (-) True G335800
TU397687 lncRNA upstream 306729 20744559 ~ 20745016 (-) True G335831
TU397718 lncRNA upstream 485077 20922907 ~ 21002111 (-) True G335859
TU397730 lncRNA upstream 579116 21016946 ~ 21018572 (-) True G335868
XM_034298113.1 mRNA downstream 1630 20369151 ~ 20375049 (-) True eif5a
XM_026938094.2 mRNA downstream 10038 20364456 ~ 20366641 (-) True rpl22l1
XM_026938189.2 mRNA downstream 12943 20361593 ~ 20363736 (-) True LOC113541302
XM_026938273.2 mRNA downstream 20660 20340889 ~ 20356019 (-) True slc7a14b
XM_034298170.1 mRNA downstream 67637 20295943 ~ 20309042 (-) True skilb
XM_026938053.2 mRNA upstream 7409 20445239 ~ 20488144 (-) False pld1b
XM_026938054.2 mRNA upstream 7409 20445239 ~ 20480895 (-) True pld1b
XM_026938055.2 mRNA upstream 8748 20446578 ~ 20488144 (-) False pld1b
XM_034298257.1 mRNA upstream 59258 20497088 ~ 20557959 (-) True fndc3bb
XM_034298046.1 mRNA upstream 122260 20560090 ~ 20591616 (-) False stag1b
TU397560 other downstream 128218 20246566 ~ 20248461 (-) False otos
TU397559 other downstream 130401 20242520 ~ 20246278 (-) False cops9
TU397303 other downstream 194267 20179412 ~ 20182412 (-) True G335523
TU396884 other downstream 772986 19600727 ~ 19603693 (-) True G335165
TU396861 other downstream 797759 19576108 ~ 19578920 (-) False nup58
TU397621 other upstream 92792 20530622 ~ 20557948 (-) False fndc3bb
TU397639 other upstream 172402 20610232 ~ 20612309 (-) True G335788

Expression Profile