RNA id: XM_026938139.2


Basic Information

Item Value
RNA id XM_026938139.2
length 2356
RNA type mRNA
GC content 0.51
exon number 6
gene id jph1a
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14486970 ~ 14517787 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cactctcccacacacacgcacacacacacacgcgcacacacgcccTCCAACCCTGCCAGCCGCCTCACATCCATCTTCACACTCTCCCgttcatgtttatttgtttatgtttatttattctccATCCGGGAAAAGAAgaacacactggaaaaaaaagaagacaaaaacagcaacaagaaggaaaaaaggattattattcatttctgaATGACGGGCGGCCGGTTCGACTTCGACGATGGCGGCACTTACTGCGGCGGCTGGGAGGGCGGGAAAGCGCACGGGCACGGCGTGTGCACGGGGCCGCGCGGCCAGGGCGAGTACAGCGGCGCGTGGTCTCACGGCTTTGAGATAGTCGGTGCGTATACATGGCCCAGCGGCAACACGTACCGGGGCTACTGGGCGCACGGCAAGCGGCACGGGCTCGGCGTGGAGCGCAAAGGACGCTGGGAGTACCGGGGTGAGTGGAGTCACGGGTTCAAGGGCCGTTACGGAGTCCGCCAGACCCGGGAGTCACCCGCCAGGTATGATGGCACCTGGAATAACGGACTGCAAGACGGATACGGGGTGGAAACCTACGAGGATGGGGGTACATATCAGGGTCAGTGGATGGGTGGGATGCGTCATGGTTACGGCGTGAGACAGAGCGTCCCGTACGGCATGGCCATGACCATTCGCTCCCCTTTGCGAACTTCTCTATCATCCCTACGAAGCATGCAGAGCAACGGTGCTGTGCTGCTGCAGGATGAGGCCTCTAACGTGCCAGCCAACACACGAGGTGGCTTTGTCTTAAATGTCcatggtgagaagaaaaaaCGTCCTTTGGTCCGGCGTGGATCACTGTTCGGAAGCCTTCGTCAGCTCCGGAAGTCCGAATCAAAAAGTTCGATTTCAAGCAAGCGCAGCTCAACACGCAGTTCTGCCATGAGCCGAATCAGCTCGAGCGACGCCGAGGACGAGGACAAGACGGACATTGAGGACAATGTTGACACCGAGGACAAAATGGACGCCACAGTCACTGAGTCCTATGCAGGCGAGTGGAAAAACGACAAGCGAAGCGGCATTGGAGTGAGCGAACGCTCTGATGGCACCAAATACGAAGGGGAGTGGTTGAACAACAAGCGGCACGGATACGGCTGCACCGTTTTTCAGGACGGAACCCGGGAAGAAGGGAAgtacaaaaataacacactggTCCGAGGGATAAAGAAGCAGCTCATTCCACTCAAAAATCCCAAAACCAAAGAGAAAGTAGACAGTGCAGTGGAGGGAGCGAGGAGAGCAGCCAATGTCGCCAGAACCAAAGTGGAAATCGCCCTGTCAAGgACAGCCCATGCCAGAACAAAGAGTGAATCAGCAGACCAGGCTGCAGTTGCTGCTGACCAGGAGTCAGATCTTGCAAGGGCTATAGCAAGAGAATTAGCTCCTGACTTCCAGCAaccagGCCTTGAGTACATCAAGCAAAACTTCACATACCATGTGGAGGAGATTAAAGAAGCTCCACTAGAGttggagaagaaggagaagaaagagaagtcTTCATCAGGCAGTCCTTTTTATCGCCGTGGCACGACTCCATCACACTCGCCTACTCACAGCCCGACTCCCTCACCTCCATTATCACCAACGAAGAAAAATCAACAACCAAGTACTGGTGTGACACGAAAGATCAGCAAAGAAAGTGCTACAGCAACCCGTAAAATTAGCAAAGACAACAGCACTCTATCCCGTAAGATTAGCAAAGATGAAAGAGCCACCATTGTAGCCGAAATTAGCAAAGTTCCTGCCATCAAAATTCAAGATACTGCACCACCAAAGCCGCCCAAGCTCAACGAACCATCAGTAAACGGCCAATTACACACTGCTTATCATAGCTATTATGtgaaaacacataaaaacatcCCTCCACCAGATGAACCGGAGGATGAAGAGCCTGAAATGACACAGTCCAGTTTAGCTCGAATGCCACCACCTCCAAAGATGGTGCGGTCACCCACGCCAAAACTAGAGACAAAGCTCAGGAAACAAGAAAGTGTAAAACCAAAGAGTCTCACTGAAACCAAGAAAGCCAGTGTGGAGTTCATGAATGAGGTGTTAGAAGATGATACGGGTCTGAATTCTATTTTAGTTGCCATGGTGATGCTCTTGAATATTGGATTGGCCATcatttttgtacactttttgACATGATTGCACTGTGTTTCAGTCATGGAAATAACACAGTGTTACGTTAAACTGGCGCTGGTCCTTGGCCGTGGGAGCAACAGAAGAAGTTTTGGAAAATAAGAACGCCTTTGGAGGACGACGTAACTTTTCATGGCTCGTTTAGCCGTGTAAAAGACTGACTGTTAGAAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576995.1 lncRNA upstream 524786 13958024 ~ 13962184 (+) True LOC117595809
TU392599 lncRNA upstream 1104334 13380644 ~ 13382636 (+) True G331502
TU392593 lncRNA upstream 1124268 13361369 ~ 13362702 (+) True G331496
TU392595 lncRNA upstream 1125952 13360280 ~ 13361018 (+) True G331498
TU392561 lncRNA upstream 1196571 13287447 ~ 13290399 (+) True G331468
TU393268 lncRNA downstream 170376 14688163 ~ 14703270 (+) True G332111
TU393426 lncRNA downstream 427204 14944991 ~ 14945212 (+) True G332238
TU393440 lncRNA downstream 438073 14955860 ~ 14956067 (+) True G332248
TU393531 lncRNA downstream 548188 15065975 ~ 15113514 (+) True G332334
TU393529 lncRNA downstream 593876 15111663 ~ 15112523 (+) False G332334
XM_026937862.2 mRNA upstream 81208 14386961 ~ 14405762 (+) True crispld1a
XM_026937910.2 mRNA upstream 177499 14297560 ~ 14309471 (+) False cd226
XM_026937909.2 mRNA upstream 178296 14297560 ~ 14308674 (+) True cd226
XM_034298235.1 mRNA upstream 191199 14234044 ~ 14295771 (+) True rttn
XM_034298236.1 mRNA upstream 191374 14234044 ~ 14295596 (+) False rttn
XM_026937861.2 mRNA downstream 11877 14529664 ~ 14535320 (+) True LOC113541072
XM_026937931.2 mRNA downstream 26204 14543991 ~ 14564674 (+) True zfhx2
XM_026937930.2 mRNA downstream 26204 14543991 ~ 14564674 (+) False zfhx2
XM_026937980.2 mRNA downstream 48005 14565792 ~ 14577242 (+) True pabpn1
XM_026937981.2 mRNA downstream 48006 14565793 ~ 14575630 (+) False pabpn1
trnat-agu_17 other upstream 1101696 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 1228554 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 1774292 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 2330183 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 2738411 11738158 ~ 11748559 (+) True ankha
XR_004576981.1 other downstream 733848 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 1048388 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 2589685 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 2589685 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 2767295 17285082 ~ 17300011 (+) True G333388

Expression Profile