RNA id: XM_026938140.2


Basic Information

Item Value
RNA id XM_026938140.2
length 1645
RNA type mRNA
GC content 0.44
exon number 3
gene id urad
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17432046 ~ 17434825 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTATTTCAATCATTTTTGGTTCAGAATATCAGATCAGGGCTGGCTGTATCAGTTTACACACATGTCCAGAACCAGTCTTTAGTATTTGAAATTTCAGGTAAGAGGATCACGTGGCTGACTTCTGCGTCATTAACACCACGCCCAGAAGAGGAGTGGTGTTATACACACGTATTCCTAGCTATAGCCCTGGTCGCAGTTGAATTGAAAAAGCCTGAACTGATAGGCTCCATTTTTGGAAGGACTCAAACTTTGTTGCTTGTCACTGGACTTTTGCAGCAGTTCATTAAATGCTGACTGGAAATGAAGACATAAAATTATGTGAGGAGCTCTACTCATTCAACAATCTTTGCACGTCGCCACCGGATTCTGGGCGCAGCATTCAGGAATTTCCAGTTTTCCCATAGTGCATTTCAGCAGTTAATATATTTCATTGGCTTTGGTGTCATACCTCTATGGCGCGGACCTGTGTTTGGCAGTGGCCAGTAGTTAAAGTGTATCTGATACCTGTCATTATCAAGCTCCAGTGCTCTAGTTTCAGAGGGAAGAACCATCCCAAATTCATTTCAGAAGTGACTCCAGGATCAAAGCCAGTTTTTAGTGTATCATTCTTTTGAGGATTGCTTATGCCCTGTTCTggcatgaaagaaagaaatgtagatGATTGTAAGCTACCGGGGACAATTTCTAGCCTCCACATTTTTATTAGAATAACAAGTTTTCACAGTGGAGTTTGCATGAGACATCATGGACATTAATGCTGTGAACGCACTCTCGTATGAGGACTTTTTGGAAATATTTGGGAACGTGATTGAGAAATGTCCCATCATCCCAGCTGCGATATGGATCCACCGTCCGTTCACAGGCCTAGCGGACATTGAGGCTCACATATCCGACTTCATCGACAGTCTACCTGAATCAGGTAAAGAAGGAATCCTCCGGTGCCACCCGGACCTGGCGGGCAGGGAGCTGCAGAGCGGCGCGTTAACCCAGGACTCGCAGGAGGAGCAGCGCGCGGCTGGCTTCACCGACCTGCAGCCTGCCGAGGTATCGCGCATGCGCAGCCTCAACTCCGAGTACAAGGAGCGCTTCGGCTTCCCGTTTGTCATCTGCGCGCGGCTGAACACCAGACAGGACATCATGCGCGAGCTGCTTCAGCGCCTCGGCAACGACCGTGCGGCGGAGAGAGCGCGCGCCATCGGCGAGGTGAAAAAGATTTGCGCGCTGCGACTGCGCAACCTCGTGCTGTCCGACTCCGCAAACAAGCTCTGAGGTGACGAGCTTTGCGTGAACTCTGCGTGAAAACGGAAGGAATGATCACGTATAATGTAGAATTTGCTTAGCatttacttttcttttatttgactGTGATCAGTGTGTCATTTATAATGCTTACAATGCATCATGTTCACAATTCATAATGCACAATAGATAGCCATAAAGTGttatgcattttcataaataatcagGACAACGTGTATATTGTATTTGAGAGTATTAaaacatgatatgaatgtgttcaCACTTCATTATGAATATGACTTTAATAGAAAAAGTTACCAAGTTATATAACTAATCACTcagggattttttaaaaatactttttttttgttttttaataaacaaaaatgtccaTATTTCAAACAGA

Function

GO:

id name namespace
GO:0006144 purine nucleobase metabolic process biological_process
GO:0019628 urate catabolic process biological_process
GO:0019428 allantoin biosynthetic process biological_process
GO:0005777 peroxisome cellular_component
GO:0016831 carboxy-lyase activity molecular_function

KEGG:

id description
K13485 PRHOXNB, URAD; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395018 lncRNA upstream 68971 17362871 ~ 17363075 (+) True G333548
TU394762 lncRNA upstream 245371 17186129 ~ 17186675 (+) True G333360
TU394629 lncRNA upstream 534191 16893006 ~ 16897855 (+) True G333244
XR_003404172.2 lncRNA upstream 541885 16888937 ~ 16890161 (+) True LOC113541357
TU394631 lncRNA upstream 542317 16888906 ~ 16889729 (+) False LOC113541357
TU395063 lncRNA downstream 11360 17446185 ~ 17447043 (+) True G333582
TU395113 lncRNA downstream 105812 17540637 ~ 17541761 (+) False rnf6
TU395303 lncRNA downstream 232811 17667636 ~ 17667844 (+) True G333787
TU395307 lncRNA downstream 235591 17670416 ~ 17670625 (+) True G333791
TU395294 lncRNA downstream 272897 17707722 ~ 17712380 (+) True G333779
XM_026938210.2 mRNA upstream 41407 17378301 ~ 17390639 (+) True ccdc191
XM_034298218.1 mRNA upstream 41407 17378301 ~ 17390639 (+) False ccdc191
XM_034298150.1 mRNA upstream 78737 17336192 ~ 17353309 (+) True drd3
XM_026938106.2 mRNA upstream 78737 17336192 ~ 17353309 (+) False drd3
XM_026938246.2 mRNA upstream 98537 17329834 ~ 17333509 (+) True si:ch211-161h7.8
XM_026937820.2 mRNA downstream 15898 17450723 ~ 17466452 (+) False lnx2a
XM_026937819.2 mRNA downstream 17339 17452164 ~ 17466452 (+) True lnx2a
XM_026938072.2 mRNA downstream 48868 17483693 ~ 17492318 (+) True usp12a
XM_034298075.1 mRNA downstream 61252 17496077 ~ 17503703 (+) True gpr12
XM_026938240.2 mRNA downstream 101119 17535944 ~ 17542387 (+) False rnf6
TU394792 other upstream 130042 17287160 ~ 17302004 (+) False G333388
TU394795 other upstream 130349 17292031 ~ 17301697 (+) False G333388
TU394798 other upstream 132035 17285082 ~ 17300011 (+) True G333388
TU394801 other upstream 132035 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 136992 17287160 ~ 17295054 (+) False G333388
TU395491 other downstream 551937 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 880531 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 880533 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 880535 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 880858 18315683 ~ 18323295 (+) True mtfr1

Expression Profile