RNA id: XM_026938143.2


Basic Information

Item Value
RNA id XM_026938143.2
length 4901
RNA type mRNA
GC content 0.47
exon number 23
gene id sema5a
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13509875 ~ 13718115 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgttcactctcTCAGTGACTCCTGTGCCACTCGgatcacactctcacactcctctATCAGGATTACTGCAGCCCTGAGCCgcttccctctctcctctcagcttcttcttcctctgctcTAGATGATCCCTCTTTCCGCCGGTGTTCTGTCGGTCTCAGATGCGCAGTGCTGTGTTGGCTGCCTCTAACCGCAGTGTGTTGAGTCTCGGTGAGGCCGATGGCGCCCCGTGTTGCGGGATTCGGCCCGGCCCGCTTCCTGGTTCTGCTGCTCCTACTGCCTGGAAAAATGTCCCATTGGGGCGTAGCGATGGCGACAGAGTCACCCTGCCACCGAGCTGAGCATCCATTCATCTCTCACGCAGAAATTGAGCCATGGCTCCATCGTTTTAGAGCTGAGGGCACGGTGGATTACTCAcagctgacctttgaccctgggCAGAACGAGCTGATTGTGGGGGCGAGaaatcaTCTCTTCAGGCTGCATTTGGAGGATCTTTCATTGATCCAGGAGGCAGAGTGGCATTGTGATGAGTTCACCAAAGGTGCCTGTTTCAGTCGAGGGAAATCAGAGgaAGAATGCCAGAATTATATCCGTGTCCTTCTGGTGAATGGGGACAGACTTTTCACCTGTGGCACAAATGCCTTCACTCCAATTTGTACCAATCGTACACTGACCAACCTAACAGAGATCCATGACCAGATCAGTGGCATGGCTCGATGTCCCTACAACCCCCTCCATAACTCCACAGCACTTATTACCTCCAGTGGAGAGCTCTATGCCGCTACCGCTATGGATTTTTCTGGCCGAGATCCTGCGATTTACCGCAGCCTAGGAGGCCTTCCTCCACTCCGCACAGCTCAGTACAACTCCAAATGGCTTAACGAGCCCAACTTTGTGTCCTCATATGACATTGGAAACTTCACATACTTCTTTTTCCGGGAGAATGCTGTGGAGCACGATTGTGGGAGGACTGTATTTTCCCGTGCGGCACGTGTGTGTAAAAACGACATTGGTGGTCGGTTCTTATTGGAGGACACCTGGACCACATTCATGAAGGCAAGACTGAACTGCTCAAGGCCCGGAGAAATCCCATTCACCTATAATGAGCTGCAAGGAACCTTCTTCCTACCAGAGCTTGAGCTGCTGTACGGTATCTTCACCACAAATGTGAACAGCATTGCTGCCTCGGCAGTGTGTGCCTTCAACCTGAGCGCCATTACCCAAGTGTTCAGTGGGCCTTTTAAATACCAAGAGAACTCACGTTCAGCATGGCTTCCTTATCCAAACCCCAACCCGGACTTCCAGtGTGGGACAATAGATTATGGCTCCTATGTGAACCTAACTGAGAGGAACCTACAAGATGCTCAGAAGTTCATCCTGATGCATGAAGTGGTTCAGCCCATCATCCCTGTGCCCTACTTCATGGAGGATAATGTCCGTTTTTCTCATGTTGCTGTGGATGTTGTGCAGGGAAAAGATGCGCTCTACCACATCATCTATTTGGCAACAGATTATGGCACCATTAAGAAGGTTCTCTCTCCACTTAACCGAACCACAGGCAGCTGTTTGCTGGATGAGATTGAGCTTTTTCCCTCCAGGAGGAGAGAGCCGATCCTGAGCCTACTCATCCTGCAGAGCCGCAGCGAACTTTTTGTGGGGGTCAGAGATCAGGTTATCAAAATCCCGCTCATGCGCTGCAATTTCCACAAATCCAGAGAggCATGTGTTGGAGCGAGGGATCCATACTGTGGGTGGGATCTGGTGTTAAAGAAGTGCACCATGCTGGAGGAGAGTGTGAGCATGAGTCAGTGGGAGCAGAGTATCACTCACTGTcctgtaaagAATGTGACTGTAGATGGTCACTTTGGCCCTTGGTCCAGTTGGAGTTCATGCAGTCACAGTGATGGAGGAAGTGTTGGCATGTGTCAGTGTCGAACCCGCGCCTGTAACAGCCCGAGTCCTCAGTGTGGAGGAAAACAGTGCCAAGGCAGCAGCGTGGAGGTGGCCAACTGctccagGAATGGAGCGTGGACACCATGGACATCCTGGTCCTCGTGCAGTACGAGCTGTGGGATCGGCTTCCAGGTGCGTCAGCGCTCCTGCAGTAACCCAACGCCACGCCACGGGGGACGAGTTTGTGTCGGTCAGAACCGTGAGGAGAGGTATTGTAATGAGCACCTCCCATGCCCCCCACATATCTACTGGTCAGCCTGGTCACCATGGGAACGCTGCACAGTGCCATGTGGTGGTGGCATCCAATCCCGTCACAgggtctgtgaaaatggaaatgaatgtcCTGGATGCAGCATGgaGTACCAGTCGTGTAATACTCTTCCCTGTCCTGATCTGAAGAAAACAACACCATGGACACCTTGGACCCCTGTGAACATCTCGGATAATGGAGGCCATTATGAGCAGAGATTTCGCTACACGTGTAGGGCGCGAGTGGCCGAGCCGAACATGCTCGAGGTTGGGAGGCAGAGGATTGAGATGCGCTATTGCTCCAGTGATGGCTCCACCGGCTGCTCCACCGATGgagacGTGCTGCGCTCAGGCCGTATCTCTGGGCTCACAGTGAACGGAGGCTGGTCAGTCTGGAGTTCATGGACTCAATGCAGTCGTGACTGCAGCTCAGGAGTGCGCAGCCGCAAGCGAACCTGCACAAACCCTAAACCAAAATATGGAGGGACGACATGTTCAGGGCCTGCGCAGGAATACCAGGAGTGTAACACTACACCATGCCCAGTGGATGGAAGCTGGTCATGTTGGTCTTCTTGGTCCAGATGTTCAGCCACATGTGGTGGGGGTCATTACATCCGCACTCGTTCGTGCAGTAACCCTCCGCCTGCTTACGGCGGAGACATCTGCCTTGGCTTACACACAGAGGAGGCTCTGTGTAACACACAGCCCTgtccagAGAGTTGGTCTGACTGGTCTGAATGGTCCCACTGTGACTCATCCGGTTCTCAAATTCGTCTTCGTCACTGTGACGTCCTGTTTCCTACTGGGAATCAGTGTTCTGGAAACAGCAGCGAAGTCCGTGCCTGCCTGTCCGACTCCAACTTTATCCCAGAGATCTCTGTAGCACACTCGAGTCACACGGAGAGACGCTGTGGAGATTTCAACGTATTCCACATGATTGCTGTGGGCTTGAGCAGCTCCATTCTAGGCTGTTTGGTCACTCTACTGGTCTACACCTACTGTCAAAGATATCAGCAGCAATCCCATGATGCAACAGTGATTCATCCCATTTCTGCTGCACCTCTTAACACCAGCATCACCAACCACATCAACAAACTCGACAAATATGATACAGTGGAAGCCATTAAGgCTTTCAACAAGAACAACTTGATCCTGgaggaaagaaataaatactttaacCCCCAATTAGCCGGAAAAACCTACACCAATGCCTATTTCACGGACGTCAACACCTACGATGACTATTAATCACAGAGTTTTATGACCAGCACTGCTTAATTAGCAATTCCACCACCGTGAACAGTTCAtggagtctgttttttttttccctcatggcTTGCATTGCTGTATGATGTTTTATGTGGGACCATTTTAACATCACACATCAGTAAAACCCCATTAAACCATCTTCAACTCTAACAAGGACATTGTGCTCTTCTGGTGTGTGGATATTACTGCGCAAACTCAACTCTGAACAGCAAAAGGATATCTCCAAGGTGGAGAACTGTTTAAAAAACTTTGAGAGTGGATCTGATCCCTCTGTAAACTCTCTAAGAAAGACCTTTGGGCTAGGGGTTGGTGCTTTTTGCAtgattttcatctttttatttcatttgtttgcaTTGCATGGTTGATCGCGCTCCAGCAGACCAGGTTATGTCCTCAATGACCAGATTGACCCTTGACAGCTTTGTCTGCTGTGCTGAATCAGCAGCGACCCCGTGCCTCCCACATTGGTGCCCAGAATATTTGCCtgcctgaaaaaaaacaagtgtagATACATTGGTGTCTGGCAAATATGTTTATCCGCTCAAGCTAATACCAGTGATGGGAATATCTgtgggtttatttttttgtcttgtacagtatattcataaatcataaattgtACATCTGTGTAGCTTTTGTAGACCAAACTCTTATAATGCTTGTTGTTTCATCCCACTGTAATTCATTAACTTTAAAAAgagaatttaacatttaacaacaaACGCATTAACACCTTTTTATAACTGTAATCCTTTGCTAATTTGAATACTAAGATCATATTTATGTTCAGATGTTTGGTACAAGATGTCATAACTGCATCGTAAGCTCATATTTTCTAAAGAGACGCTAATGTAAAAGCATCTTCAGCATCTAAAAGGTAACATCATTTCTTCATGATGATAACCAtattggtgctgtattttccagactataagatgcattttttttctttgccctCTAGTAGGTACTTTCTTACACTGTATGTTATAAAAGTTTGCAGTTTGTTcagaatttttttgtaattataatgtgcccatttgtttgtttatttacgGTAGCCCCACTACTGTAGTTCTTATGATAAATTGTAATCCTGTTTACTAAACTATGCTTATCattattttgtctatttgtACTTAAGCAAAACTAAATACTAGAAGGCCACTAAAGTTTCATTCACTCTTATTTCTCAGTTGTTTCAAAGGTATTTACAAAAagataatacattttttcaacTAAGCAGACAGAATTTAGACGAGTGTGTACACTCTGGAGCAACTTATTGTCTGGAAAATATGGTAATGCAGTAATCAGTGCTGGGATATCTGTTGTGTTCAATTTCTACtaattgttttggttttttttacatgcaaaaGTTCTGTTCGCTTGTTTTAATGTGCATAAATTAAAACAGCTTCATACA

Function

GO:

id name namespace
GO:0048675 axon extension biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06841 SEMA5; semaphorin 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392679 lncRNA downstream 96064 13412902 ~ 13413811 (-) True G331569
TU392678 lncRNA downstream 102417 13406386 ~ 13407458 (-) True G331568
TU392674 lncRNA downstream 127440 13380609 ~ 13382435 (-) True G331565
TU392669 lncRNA downstream 162018 13343614 ~ 13347857 (-) True G331560
TU392655 lncRNA downstream 230489 13278136 ~ 13279386 (-) True G331546
TU392965 lncRNA upstream 40814 13758929 ~ 13759290 (-) False LOC113541105
TU393198 lncRNA upstream 748279 14466394 ~ 14466613 (-) True G332056
TU393340 lncRNA upstream 795620 14513735 ~ 14522615 (-) True G332169
TU393341 lncRNA upstream 799524 14517639 ~ 14521648 (-) False G332169
TU393312 lncRNA upstream 819137 14537252 ~ 14564704 (-) True G332147
XM_026937940.2 mRNA downstream 103798 13397268 ~ 13406077 (-) True cct5
XM_034298206.1 mRNA downstream 137832 13361369 ~ 13372043 (-) True eif2s3
XM_026938164.2 mRNA downstream 137864 13361369 ~ 13372011 (-) False eif2s3
XM_026938161.2 mRNA downstream 149778 13351341 ~ 13360097 (-) True zfx
XM_026938206.2 mRNA downstream 190436 13287330 ~ 13319439 (-) True pip4k2aa
XM_034297985.1 mRNA upstream 19651 13737766 ~ 13748072 (-) False si:dkey-118j18.2
XM_034297984.1 mRNA upstream 19651 13737766 ~ 13748070 (-) True si:dkey-118j18.2
XM_034297986.1 mRNA upstream 20877 13738992 ~ 13749633 (-) False si:dkey-118j18.2
XM_026937955.2 mRNA upstream 31176 13749291 ~ 13754357 (-) True timm21
XM_026937896.2 mRNA upstream 39543 13757658 ~ 13762615 (-) True LOC113541105
TU392350 other downstream 831942 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 831942 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 2426724 11082268 ~ 11083151 (-) True G330379
XR_003404157.2 other downstream 2579100 10923126 ~ 10930775 (-) False ackr4b
TU391129 other downstream 2986612 10522732 ~ 10523263 (-) True G330185
XR_003404167.2 other upstream 1218771 14936886 ~ 14937404 (-) False LOC113541102
TU393587 other upstream 1247698 14965813 ~ 15065810 (-) False LOC113541115
XR_004576965.1 other upstream 3112581 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 3112581 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 3397983 17116098 ~ 17139685 (-) False zbtb47b

Expression Profile