RNA id: XM_026938147.2


Basic Information

Item Value
RNA id XM_026938147.2
length 4852
RNA type mRNA
GC content 0.41
exon number 2
gene id bcl2a
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12181785 ~ 12234183 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaaaacgcgcTTCTCATCAGCTGCAGCTTTGCGCCACACAACTTCAGGATCTCTGGTTCGCTTTCGTGTCATATCAGCCTAAATGCTCCAGGCAGTTGGCGCCAGTCCCCGTCGGGATCGCAAGAAAATCGACGCGCGAGACAGATGTGACCGGCGTGGAAATGGATCTCGTGTTGGTTTTGAGGTTTTGCTCCGCGACAGACTGTTTTCAGGTTGTTTCTGAGATGCGTTCCGAGTGACCCCCGAAATTACGCATTGCGCGTCAGCTCAATTCACGGTGTCTAAAAAAATGGCAAACCAAAGTCCCTATGACAATCGGGATATCGTAGAGAAGTATCTGTATCACAAACTTTTGAAGCGAGGCTACGTGTGGGAGTTCCGCGCCGGAGCAGAGGAAGACGACGGATCGAGGGAGCCGCCGGCGGAAGTTGTGGATCGCAGGCCGCGCGCCGTCTTGCCGCTGCACCGCGTTCTGCGCGAGGCCGGCGATGAGATCGAGCGGACGTACCAGCGCGACTTCGCGGCCATGTCGGACCAGCTGCACTTCACCCCGAGCACTGCGCAGCGCCGCTTCACCGCCGTCATCGAGGAGCTGTTCCGGGACGGCGTCAACTGGGGACGCATCGTGGTCTTCTTCGAGTTCGGGAGCACCCTTTGCGTGGAGAGCGTGAACCAGGAGATGGCGTCCCAGGTGGACAACATAGCAAGTTGGATGACGGATTACCTGAACGGGCCATTGCAGAACTGGATTCGGGACAATGGAGGCTGGGATGCCTTTGTGGAGCTCTACAGTCATCAGAGAGCATCCTTGTTCCACCCCTGGCCCTATTTAAAGACAGTCTTTGGCCTGGCAGCACTGGGAGCAGCAGGAGTCACTATTGGCGCGCTTTTTTCTCAGAAGTGATCATCTGGATCATCAACACCTGtccttctttttctgtctgtcctctGGCTTATGAAGGCACTTGGTTTAACAGCGTAGCACTGCCCTGGTGTTCCGTCCATGTTATGGAGCTGTCCTTGAAACTGGAGTGGGAGAAATGCaatgataaaaaaacaaaacaaaacaaaaaaaaaacgagaagCTCCTACACATGTACTATAACTATCACTGCCATGTATAGATCTagatacaaatatatatttacacatatacacacacacagcaaacacagaaTGTACAACTCCCAAATTCATGgaccacatcagcacacacaaaTGACATTTAGTTCTTTTACTGtaaactttatttacatttgaacTTCTATGAACCTGCAATGCCAGAGGTCCCCATATGATCTTTATTATGGTTTTATTACTTTGTGTGTAGCATGGAATGATATGTGTATAACGTAggagttggaaaaaaaaaaaaaaaaaaaaaaagaaatgaaccaAGAGACTGCTATGAATGCTCCACTGTCTGCATGCATAGTGGCAAGCTACTTTTTTGCATGATGGCCTTTTCAGCATGGAAAAGCACCACCTGTGTAGGACATTGTTGggtgttattttttcttttttatctgtctttctccttctcaAATGTTTCTCAGCGTTCCTCCCAAAAGTAGCAAGTGCTGCTCGTTCCTCATTAGGCATGCTCGTCTGTTTGAATGGCGGGCGAATCTCTGGATTTGTCCTTGCTGGATAACCGCTAAGCACTCGCTTCACTTGCTTTCAACAGCTTAAAAGTTGTGTTCTGAGGTATACCACACCTGAATGTATaatatgtgtctctgtgtatggTGTGACTCTAGAGACATTTAACCTTTCTCATCTCGTCTGGTGTcactttgcttttatttcatgtcccttttattaaaaaaaaggaaagaaaaaatttGAGGGCTAAAAGCCATCAAATAAGATTATTTAAGGGGTAGAACCTGAAAAGCAGGATGCAGGTAGAGAgatgtaagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattgtaagTAGAATGTGTTGAGAGAGAGCTTAGCCAGAAAAGGTGGGTATCTCTTAGCCCATTACAGCAACCAGAGATAAAGCAGGGCAGCTGGGGTCAGCCAGGTGTGGTAGGGAGGGGGTTGGGGGTACGGGGAGGGGGCAGGTAGCAACAGAGGCTTCATTCAGCATGGCACAGTGAGCATCCAGGGAGCAGAAGCTCCAGAAAGACATAGTAgaaagtgaataataataataatgatgataataataatacttattattattattattattattattattattgttattattattattattgatttattttattttattttcttatttttatacattattttcacatcattaaaAAGTCAAACATTATGTGACCCCCCTGGACAATTGAGGCAGCGCAGTGGGGGTCTAATGACCCAATGGAGACAGACCTAGAATTCGAACCAACCTTCTGGACCATTCAACAAGTACGGAACCATGACTGCTGAGTTACCATTGCTCAGTGTGCTCTTGTGTCGAAGGAATTAGCTTGAAACTAGACAACTGAACCTGTgtgcttctgctgctgctttcaTCCTGAGCAGAACCCAAGCGGTATCAGATATCCCAGTGCTCTCTATGCGGAGGATTTAAAGACATTGAGACATCTGTCTGACACGTTCAGCTAGGGACCTATAGTTTCCCCTGGCAGGTAGAATCTTTGACAATCATGGCGTAgtaaaatattatgtttactTGTTAATGTTTTACTGTCATTTAATCTCATCTAAGTGATGTAACCAGTCATTTTAATATGTAAAGGCCTAAGTGATGGAGCTTTGTCTCCAGAATGCAAGTTATCTAGTAGTCCATCAAATTTAATGGCAGAactcatgtttcatgttctaaaggtacaaaaacctGGACGTAATGCAATGTTAAGCTTCTGCTTTGAATGCAGAagtatgtttattatgtatCTTATGAGTATCTTACGGGAGAGAGTTGAAGACTCGCACTGTAACATCATGTATTTTAATGGCTGCTAATGAGATGTGTAGCTCTCAGCAATGTAACATCCTCGTCATTGAGACATCATATGATGCTGCTTTATGATACAGCAAAAACTGCCACTGGTGGGGAGCTGTACTGAAATCTCCCCACTCTGTAAGCTTCATTCATCAGGAAGGGTCTAAAGACTCAGACGGCCTTAGTGTGATTGTATAAACACTCCGGATCAAGAGAAATTGTTGTTTGCCGAGTTTGACAAATGAGGTCAGGGCCAGAGTTTCCCAAAAGAAACATTCTGTAGAACAGTTAAAGTAGTGTGAAAGATGCATTGAGTAGTTTATTAAAACCAGCTTTTTCAACTGaaatcattattcattttaagatgaataattaatttgtaagaCGTTTTTGGGAAATTTTTGGCTCAGATGGTGATTCCCCAACTCTATCTTATGTAAAAATTTACAGAAATGCTAGCAATCTCAGATGTAACCTTTACCCAAGTTGGCTTGTGGTAACTGTTACAAATTGGCATTTAGGTAAGGTGTTGGGTACACTTGATATTTCCATGATTAACGCTTTCTAAAACAGAATCCGAGATAGGATTGTGTCTCCTCTGTCTCCAGGAGCAATTATAATGCAACAAattgaggtttaaaaaaaaaaaaaattgatcatCCTGCTGCAAGCCTTGAGGAGACACTGAGAAACGGAGAGTAGAAAAGTAAAATACCTGCAGAGGATTCCAGTGCAATCTTGGAGCCGctaaacatgtgaaacttcCATGCTTTGGagtatgttaatgttaattggTGCGATTTATTATGAGATCGTTCTCATAGTTGAGGGGAGGGCTTTTGAAAGAGCTACCTGGAATCGGTCCTGGGTTAGTacctttttgttatttaatatatgtatattttattatatatcatCGGTTCTCATATTACAAAGAAATTTCAAAGCCAAAATAGGAAGTTTTCCGGCTTCTTAATTGGGACAATGGCACAACAAAGCTTCATTACGATGAATTTGAATGTCAtatctatactgtatatgtgtctcCTTCTACCACTATGCATTGTTAATGTTTATGTCCATTGATAAAGCATGAAAGCATCTCTCTGGGTTCTTCATCAGTTTAATTATCAAGGAGGGAGTGTTTAACTGAGTAAAGGTGGGAGGCTTTTCCTCTGTGTGAATTGATCTGTTGTAATTTCTGTGTTTATGACAGCGCCAGTTGGTATTTAACCCTGTTATTTACATTATGTATGAGtgtgattgtgattttttttttattattattattttggctgCAGCATTTTGGAGTTACTTTCAGCTATGTGatttttatatgcatttctgCAATGTCTTGTTTTCTGAAAAATATGCCCCAATCAGctctacattatatataattgtgaaaaaaaggttaatgcactttttttgtctgtttaggCAGCTAATATCATAGAACCATTTCCAAAACATGCCACAATGAAAGAGCCAAGCCAGACacaacattcatttttttctgttttgtaattttattgcttttcttATTTTGTACCTTTCATTTCACAGGGTAGCACTAAATTTAATTATGGAACCTTTAAACCTGAACAAAATATCCACggtattttgtatattaaaagATGATAGCTAGAGGATCATGGTTTATACTTTATCAGATCCTCTTATTGCAGTCATTATTTGTTCTGCTTTCGAAATGTAGCCTGCATAAACCACTGTTCAAgctgtttttgttgtattttgttttaatttatccTCATAACCCTTAGGTGTTCTGATATGCCCATACTATTTTGTTCTCTTCTTCCTATCATAAGCTAACAATGATGTGTcctaattaaaagaaaaaccttgCCTTAC

Function

GO:

id name namespace
GO:2001243 negative regulation of intrinsic apoptotic signaling pathway biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0097192 extrinsic apoptotic signaling pathway in absence of ligand biological_process
GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage biological_process
GO:0005741 mitochondrial outer membrane cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K02161 BCL2; apoptosis regulator Bcl-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392027 lncRNA upstream 38920 12141943 ~ 12142865 (+) True G330976
TU392006 lncRNA upstream 147726 12024576 ~ 12034059 (+) True G330962
TU391950 lncRNA upstream 235547 11944030 ~ 11946238 (+) True G330911
TU391946 lncRNA upstream 285894 11895666 ~ 11895891 (+) True G330908
TU391895 lncRNA upstream 307593 11873992 ~ 11874192 (+) True G330869
TU392238 lncRNA downstream 214579 12448762 ~ 12450347 (+) True G331161
TU392342 lncRNA downstream 476336 12710519 ~ 12712678 (+) False G331263
TU392357 lncRNA downstream 498626 12732809 ~ 12733703 (+) True G331277
TU392360 lncRNA downstream 506934 12741117 ~ 12741678 (+) True G331280
XR_003404159.2 lncRNA downstream 563178 12797361 ~ 12802125 (+) True LOC113541232
XM_026938259.2 mRNA upstream 2164 12162455 ~ 12179621 (+) True LOC113541340
XM_026937798.2 mRNA upstream 25001 12062334 ~ 12156784 (+) False prkag2a
XM_026937799.2 mRNA upstream 25001 12071175 ~ 12156784 (+) False prkag2a
XM_026937800.2 mRNA upstream 25001 12095794 ~ 12156784 (+) False prkag2a
XM_034297816.1 mRNA upstream 25001 12123458 ~ 12156784 (+) False prkag2a
XM_026938086.2 mRNA downstream 194274 12428457 ~ 12499046 (+) True hs6st1b
XM_026938277.2 mRNA downstream 472756 12706939 ~ 12708003 (+) True LOC113541349
XM_034298168.1 mRNA downstream 476443 12710626 ~ 12712651 (+) True ccl34b.4
XM_026938097.2 mRNA downstream 532377 12766560 ~ 13015109 (+) True LOC113541231
XM_026938128.2 mRNA downstream 786984 13021167 ~ 13042516 (+) True cul1b
XR_003404147.2 other upstream 24998 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 433226 11738158 ~ 11748559 (+) True ankha
XR_004576968.1 other upstream 1198570 10874209 ~ 10983215 (+) False acad11
TU392341 other downstream 472756 12706939 ~ 12712678 (+) True G331263
TU392569 other downstream 1023711 13257894 ~ 13258416 (+) True G331476
trnat-agu_17 other downstream 1151018 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 3017452 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 3331992 15566175 ~ 15566663 (+) True G332636

Expression Profile