RNA id: XM_026938152.2


Basic Information

Item Value
RNA id XM_026938152.2
length 2750
RNA type mRNA
GC content 0.42
exon number 8
gene id ctdspla
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17030860 ~ 17073642 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAGAGGCAGGAGCTGGAACTGCACCCAAACTGACACCCAGCACAAATGCGACTGTtattttctttagatttttattatatggAGCTGAGATTATGAGATGCTCCtgattttatcatttaacaGAGAATATTTTATTCTCACAGGATTTTACATGAATGCAAAGTGGACTCTGATGTGAGAGAGAGGTAGacacagggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcacatcgGGACAGTCTTGGCTAGCTCGCTAGCAGGCAGGGCTAGCTGCTGCATATTCCAGTGAAGCAGGCGACTTAAAGAGAGGACTTGTtcttgaaataacaagaaaacaatCCCGTTTCCATGGACAACACGTCCATCATTACCCAGGTAGCAAATCCAAAGGAGGAGGAAATCATTTCTTCGAGTCAAGAAAAAGTCTTGCAGTCGAACAGCAGCTTAAAGAAACACAGGAGCAGGAGCATCTTCAGCCCTTTCTTCTGCTGCTTCCGCAACTACAATGTGGACCCGCCGCTTCAGAACAACAAGACGTGTTCGCTGCCTCCACCTGCTGAGGAGAACAGCGGCTCTCCTAAgTGTGATCAGGTCCAGGTCATCCCTATCCccagtTCTCCAGCCAAATACCTCCTACCTGAAGTCAGCATCACGGACTACGGCAAGAACTGCGTGGTGATCGACCTCGACGAGACCCTGGTACACAGCTCCTTTAAGCCCATCAGCAATGCAGATTTCATCGTTCCTGTGGAAATCGATGGAACGGTCCATCAGGTCTACGTGTTAAAGAGACCTCATGTGGACGAGTTTCTGCAGAAGATGGGTGAACTGTTCGAATGTGTGCTCTTCACAGCCAGCTTAGCTAAGtatgcTGACCCCGTGGCAGATCTGCTCGATCAGTGGGGTGTGTTTCGTGCGCGCCTCTTCAGGGAATCCTGCGTGTTCCACCGAGGGAACTACGTCAAAGACCTCAGCCGGCTGGGCCGACAACTCAGCAAAGTGATCATAGTGGACAACTCGCCCGCCTCGTACATCTTCCACCCGGAGAACGCCgtCCCGGTGCAATCATGGTTTGATGACATGACAGACACGGAGCTGCTGGACTTGCTGCCTCTGTTTGAGGGTCTGAGCAGAGAGCAGGACGTTTACAGCGTGTTACAGAGCCTGAGGGCCAGGtagcactgacacacacttacGATTCAGAGACTATACGGCTCTACCAGAAACACACTCCAGCATCGCTGGTCAGGCCAAGCTGATGCCTCTAGACGGCGCTACTGTCTCACACAGGGGAGGACGGATGGTTCACCTAAGTGGACAAACCCTTCGTGTGCAGTCTGAATATTATCGGACCGTATGCCACCCAGAGACACAGAAAATGTGTACATAGCATATGTTTCTAAACTTGCCGGAGAACAAGAAAGAATTTTTGTAAGTTTCGACTTTACAATCCTAAAGTTAAATATATACcagaaaacaaggaaaaagaCATGTTACGGAGGGTTTGGAAGATGCTGTAGCGACTCGACCCTTCGGTTCATGCTATGCAGACAGTCATTTCTCGATCAGCAGTCTCCCCAACTGTGATTTTTCTCTTACCTAAAGAAAGTGCCTTCTGAACGTTTTTATGAACACATAAGCGACATTTTTATATGCTGCGTATTTCCAGACCTTTAATCAAATATTTGCTGTAAACCCAAGTGGACAGACAAGCCTTTATTttaacactgtttatttatttttcttttccccagTGATTTCCTCCAGTCGTCATTGAGCTAAATGAACTGTGATTGGAAAAAACAGACCTTtctctggttttatttttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcatatgagcATTGTGTTGATGGGAAAAATCCTGATTAGCATCTAACTGCAATTTGAGTAAATGACATGGAAACTGTTAATCAGCACTcaaatacaatacagtatgaGCATTTATGAGCATTTACCAGAATCTAAATAAATGTTGCAATCGATATCAGACATGGCTCAAAGGTTATCGTCTTTTAAACCCCCCATAGAGGAAGCAGAATATAAGGTTTACAGTTTACACATCTGCCATGTTCTCTTTTGGTAAACTCTTCAGTAGTACAGACTAAAACAAGGTTCAAATtgagatttgtttgtttgtttttgtttatatttgaggGGAggataaatgttatttatttagttgtttgtttgtttgtttatccatCCTTGAGGGAAGAatacttgtttttgtttgtttatttgcttgtttatccatccatctttgAGTgacagatttgtttgtttgtttgtttgttcgttcattgatgttttttttttttctcacaatttaCAAGGACGTAAAATCTTACAAGGCCACAGAGTTATAGATAATAGGTAAATATGTAAATTGATGtagtgtacattttatccatttatagttacatatattGTTGCTGAACGTACGTGAAGTGCGCTACATTTCCCACGTAAAATTCCCACGTATTAAATTCTCTTGAAAATCACTGTTTGTTATGAtagaaagtcctctgtcctgaagacgtaaCTGTGGTGAAAAGTTTATGGTTACAAATATGGAGACttcatcaccacatcaacgattatatgcTTTTCCCTTGTTAaataacgtttttttttattcgtggCAAGTGATCATGCTCAAGTGACATGATACAATAAAATTGTACTGTTTCATGGTTTGAAAATCAAA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394901 lncRNA downstream 163 17030465 ~ 17030697 (-) True G333452
TU394860 lncRNA downstream 22127 17007827 ~ 17008733 (-) True G333417
TU394880 lncRNA downstream 75397 16953725 ~ 16955463 (-) True G333434
TU394875 lncRNA downstream 139033 16891437 ~ 16891827 (-) True G333429
TU394874 lncRNA downstream 139496 16891128 ~ 16891364 (-) True G333428
TU394919 lncRNA upstream 12241 17085883 ~ 17086204 (-) True G333470
TU394977 lncRNA upstream 212111 17285753 ~ 17299701 (-) True G333525
TU394987 lncRNA upstream 212111 17285753 ~ 17291010 (-) False G333525
TU394988 lncRNA upstream 213614 17287256 ~ 17295034 (-) False G333525
TU394991 lncRNA upstream 213614 17287256 ~ 17301996 (-) False G333525
XM_026938293.2 mRNA downstream 1967 17015624 ~ 17028893 (-) True vill
XM_026938294.2 mRNA downstream 2002 17015624 ~ 17028858 (-) False vill
XM_034297854.1 mRNA downstream 41824 16960853 ~ 16989036 (-) False dlec1
XM_026938112.2 mRNA downstream 49784 16960853 ~ 16981076 (-) True dlec1
XM_026938113.2 mRNA downstream 49785 16960853 ~ 16981075 (-) False dlec1
XM_026937796.2 mRNA upstream 42456 17116098 ~ 17139685 (-) True zbtb47b
XM_034298271.1 mRNA upstream 42456 17116098 ~ 17138942 (-) False zbtb47b
XM_026938200.2 mRNA upstream 68819 17142461 ~ 17161207 (-) True nktr
XM_034298305.1 mRNA upstream 117677 17191319 ~ 17239116 (-) False vipr1b
XM_026938244.2 mRNA upstream 117677 17191319 ~ 17239106 (-) True vipr1b
XR_004576965.1 other downstream 150976 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other downstream 150977 16830696 ~ 16879883 (-) False oxsr1b
TU393587 other downstream 1965050 14965813 ~ 15065810 (-) False LOC113541115
XR_003404167.2 other downstream 2093456 14936886 ~ 14937404 (-) False LOC113541102
TU392350 other downstream 4352927 12676581 ~ 12677933 (-) False LOC113541288
XR_003404146.2 other upstream 42456 17116098 ~ 17139685 (-) False zbtb47b
XR_004576994.1 other upstream 111882 17185524 ~ 17239106 (-) False vipr1b
TU395488 other upstream 834252 17907894 ~ 17908812 (-) False LOC113541127
XR_004576970.1 other upstream 836296 17909938 ~ 17916556 (-) False c22h11orf65
TU395529 other upstream 851433 17925075 ~ 17926835 (-) False zmp:0000000991

Expression Profile