RNA id: TCONS_00008071


Basic Information

Item Value
RNA id TCONS_00008071
length 898
RNA type mRNA
GC content 0.48
exon number 6
gene id XLOC_004214
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 31258116 ~ 31276080 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGGGCAGTTTCATTTTCATCATGGCTTCGGAACCATGGCTTCACATCAGTCTTCtgctcttgttttgtttttcgcTTGTGTTTTCTTTGCCCACGGGTCGAAACTCCATCTGCGGTTATAAGTCATGTCCAGCCACAAAGCCATCCATGCTGAACGTCCATCTGGTTCCACACACACATGATGATGTCGGCTGGCTCAAGACTGTGGATCAGTACTTTTACGGAGaccGAAATAACATCCAGCATGCAGGTGTTCAGTATATTCTGGACTCAGTGATCGATCAGCTACAGAAGGATCCAGCTCGACGCTTTATCTATGTTGAGACGGCCTTCTTTTACCGCTGGTGGAGACAGCAGAACCAGAACACACGCCGCATTGTGACCCAGCTGGTCAATGAGGGTCGTCTTGAGTTCATAAATGGTGGCTGGTGCATGAGCGATGAGGCGACCACACACTACAGCGCTGTCATTGATCAGATGACTCTGGGGCTGCGATTCCTCAATGACACTTTCGGCGAGTGTGGACGTCCCCGGGTGGCTTGGCACATTGACCCCTTCGGACACGCCAGAGAACACGCCTCCATCTTTGCTCAGATGGGCTATGACGGCTTCTTCTTTGGCCGCTTGGACTACCAGGACAAGGACCGCAGGATGAAGACCAAAGAGATGGAAATGCTCTGGAGGGCCAGTGAGAGCCTGACTCCACCTATTGCCGATCTCTTCACAGGTCATCTTGAGTTCATAAATGGGGGCTGGTGCATGAGCGATGAGGCGACCACACACTACAGCGCTGTTATATaactttgttatattttttaagttttataaacCTTGTATAATTTAGAAACATTAGCTAAAACCttattaacttaataaaataagttaaagtgaCTTAAAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0006013 mannose metabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0005774 vacuolar membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004559 alpha-mannosidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0030246 carbohydrate binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00511 Other glycan degradation
ko04142 Lysosome

ZFIN:

id description
ZDB-GENE-050327-52 Predicted to enable alpha-mannosidase activity. Predicted to act upstream of or within mannose metabolic process. Predicted to be active in lysosome and vacuolar membrane. Human ortholog(s) of this gene implicated in alpha-mannosidosis. Orthologous to human MAN2B1 (mannosidase alpha class 2B member 1).

Ensembl:

ensembl_id ENSDART00000141062

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008813 lncRNA downstream 61341 31204925 ~ 31211308 (-) True XLOC_004212
TCONS_00008812 lncRNA downstream 69810 31200219 ~ 31202839 (-) True XLOC_004211
TCONS_00008053 lncRNA downstream 907844 30361628 ~ 30364805 (-) True XLOC_004204
TCONS_00008040 lncRNA downstream 1310748 29961114 ~ 29961901 (-) True XLOC_004198
TCONS_00008036 lncRNA downstream 1351647 29918315 ~ 29921002 (-) False XLOC_004197
TCONS_00008814 lncRNA upstream 874154 32150218 ~ 32157526 (-) False XLOC_004216
TCONS_00008815 lncRNA upstream 878890 32154954 ~ 32156318 (-) True XLOC_004216
TCONS_00008816 lncRNA upstream 1089848 32365912 ~ 32391388 (-) True XLOC_004217
TCONS_00008817 lncRNA upstream 1181252 32457316 ~ 32563702 (-) False XLOC_004218
TCONS_00008818 lncRNA upstream 1191120 32467184 ~ 32538409 (-) False XLOC_004218
TCONS_00008068 mRNA downstream 38065 31218956 ~ 31234584 (-) False XLOC_004213
TCONS_00008069 mRNA downstream 46071 31220626 ~ 31226578 (-) True XLOC_004213
TCONS_00008066 mRNA downstream 100373 31168697 ~ 31172276 (-) False XLOC_004210
TCONS_00008065 mRNA downstream 125841 31144720 ~ 31146808 (-) True XLOC_004209
TCONS_00008064 mRNA downstream 233116 31038409 ~ 31039533 (-) True XLOC_004208
TCONS_00008072 mRNA upstream 592956 31869020 ~ 31872628 (-) True XLOC_004215
TCONS_00008074 mRNA upstream 1300236 32576300 ~ 32723851 (-) True XLOC_004220
TCONS_00008079 mRNA upstream 2322149 33598213 ~ 33612433 (-) False XLOC_004228
TCONS_00008080 mRNA upstream 2322550 33598614 ~ 33618612 (-) True XLOC_004228
TCONS_00008081 mRNA upstream 2570376 33846440 ~ 33857911 (-) True XLOC_004230
TCONS_00008067 other downstream 100395 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008056 other downstream 763858 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008052 other downstream 907825 30358109 ~ 30364824 (-) False XLOC_004204
TCONS_00008048 other downstream 1116814 30153818 ~ 30155835 (-) True XLOC_004201
TCONS_00008043 other downstream 1171392 30101142 ~ 30101257 (-) True XLOC_004200
TCONS_00008075 other upstream 1455101 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008078 other upstream 2095187 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008088 other upstream 2690094 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008102 other upstream 3079480 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008105 other upstream 3190331 34466395 ~ 34466513 (-) True XLOC_004247

Expression Profile

//