RNA id: XM_026938160.2


Basic Information

Item Value
RNA id XM_026938160.2
length 3273
RNA type mRNA
GC content 0.43
exon number 7
gene id chodl
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17942428 ~ 17951626 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctctctctctccagaatGCAGCACTGCGCCGTTTAGAGAGCTCTATGAAGAATGGAGAGAGCAGACAGTGAGTGCCACTGAACAGCAGGAGTGACACAGAAAGCACTTCCTCGTCGGTGCTCTTTGCAGCAGACCGTTAAACGGAGAGGATGCGCGCGGACTCCACGGCGCTCGGGATCCTTTACGGTGTGACAGTTTGGGTCGCGAGCTGCCATGGGGCCCGAGTGGTGAGCGGTCAGACTGTGTGTCATGGCGGCCCTGAGAAGCCGTGCTATAAAATCGCGTACTTCAGTGACGTGTCGAGCCGTGTGGCCTTCTGGGAAGCTCATCAAGTGTGTGAGGTGGACGGTGGTTCGCTCCTGAGTGTGGAGAACGTCGCTGAACAGCAGCACATCGAACAGCTTCTGCAGAACCTCAGTAGGACCAGTTCAGGTCCGGGTATTGCTGATGGAGATTTCTGGATTGGTCTGACTCGTGTGGACAGCGGGAGTCCAGGGGAATACGCGAGCTACAGTTCCTGTCCTGATCTGTACAGATGGACAGACGGAAGTGTATCTCAGTTCAGGAACTGGTATTTCGATGAGCCGTCCTGTGGAGGGGAGGCGTGTGTAGTGATGTACCATCAGCCCACTGCTCAGGCTGGTTTAGGAGGACCGTACCTTTATCAGTGGAACGATGACAGGTGCAACATGAAGCACAATTTCATCTGCAAGTACGAGCCAGAGAGCCACCTGGTGAAGGAGCATGGAGACAGACCCGTGAGTCGTGATACAGAACATGAAGAAGAGACGAAAACTCCTGATGTTTATGAGGAGGAAAGCCTTTACGTCACCGTGGCAGGACCCTCAAgtATGCTGCTGATTTATGTGATCATCCCGACCATTCCTCTGCTCCTGCTCATCCTCGTGGCCTCGGGGACATGCTGCTTCCAGATGCTAAGCAAGAGAAAACCACGGACGAAAACGAGCGTGGACCAGTCAACACTCTGGATCTCCAAGGCGCCAAAATCAGACAGCGCAATGGAGGTGTAAAGGAAACTACGTTCTATGGTTCACGCAAATGCTCCATCGTCTACATACTTGTACGTGATCTTCTAACGAAAACCTCAGTGTTAACGTCGTGATACACTTGACTCCTGTGATATTTTTCTATGACGGCttttgctgctgtgtgctgaAATGAATCTCGCCAATTATTTCATTAATCTAGGTTTCCTCTTCACCTAACAAGCCCAATCCGTAATCACGCCTTCATTCCTGCGTATCGTCTCTCATCCTGCTCTCCgtttccttccctccctcagagaGAGCCATCAGAAAGCGCACTCGTTTGCAGAAGGAAATCTTCAGCTAATTGGCAGCAAACACAGAGAGCAATTAAATTACTATAATTAAGACGGGTGAAAGCCGTTACAGGATCCACATAAAGAGATTAGTTTAAAGTGGCAGCTAAAACCAAATAGAGTCGTGCCAGTTCGGAAATTCCTCCGTGCCAGAAGAAAAGGCAGATTAAAACTGCTTATATATTAGCATTAgagctttaatttttaattttaaagtccCAGGGAATAACACAGAGGCTTGTTATCTATAAATATCAAGTCTCAAGTCCTAAATTTCGAATTCAGAATTAATGCCGTTTCAATATTAAACATTAGCAATTAATTGTAGTATATTAAGTGAGACTTAAACActaggggtgtgctgttataggaaaataatcaactgtgatgagtgatggcGCCCAACActaagtggagttactgttgccaccccaaagttgattattttccaataagagcatGCCGCagtgttctattcctcttacgccacagtaatttgtcaatgattacttttgttttatttattcaagaacaGTACGTAGTACAATTTATCCaattattgttacatttaatcaaGTTagcacaaaacaagttagctcttGTTCTAACTTAaattatagaagctataaacagcctctcttttttctctatcgGCCAGAAAACTGAAAAGCGTAAACTCTGTAAACTGTCCCGAAGActtttcctgtggtggaaatcttactgactgttacaaagcgctgacactggagactccttccacgaATGATATCGAATCGAATGTGAAGTCTAGGTCATGTGACTTGAGTgcagtgtaaaatatttaaaatgtttgcatggTACCGTATGTGAGTGTTATGCTAAACATCCACCTaactatgaattaaaaaaaaaactacagaaataTGATAAAACAGTATTCTAAACCAGCTAAAACTGGCTGATCAGACTGATCTGAGAACTGTTAGGTAGGTGTGGcataatattctaatgagcacaTTTGATTGACAGCGAGAGTCTTCAAGCTTGCTATGCCACTAAAGTACAATTAAACACAACAACTCAGGAGAGAATCGGGAATGTACAGCTTGATCCAGTTGTGGAGTTAGCACTTTAAGCTATGCTTCCTAGCTTTGTGTTTGTTCACTAGCTCCACTTTTGTTTGCTAGCTTAGCTTTTGCTTGCTAGATTAGCTTCCATCAAAGAgtcaaataaaatgttcaagCAGGATTGCATAGTTTTGCTAACAGCTTTGTGGAAGGCACAAGTACCATCAGGTATGCAATTAGTACGGCTGAATCTTACGCAAGATTTCCCCAagattagctccgcccacattgCATCCAAAGGGAAAGGAATGATGACAAAGTTCATGCAGACATTACAAGTGATTCACACTTCATAAATACACAATGTATCTCTGTAAAAGACAACATTAGCCACATTAGATTACACATTTAGGTTCCCTGGGGGTTTAAAACAACCACACTGGTGTTAGAACAAGTCGACACATCCGTCATTATCCCCTGAGCGTTTCAGCTAGAGTAACATTAGCAAAGCGTGTTTATGTGACTGTGAGTCAGCTATAGAAAGCCTTAGCAGACGTGGATATTTTTATACGATGTGTTTGAAATTCTGACATTCTGCTCATTCTTATATATGCAGTTTTTGCTCGTAATATTGATCCATAATTTATCATTAAAACTGCATATATAAAAGTGGCAAATCTGTATAAATTTCACAATGCGTGTTGTATAACGTGGATTAAATTCATTGCCCATACAGTATATACCTATAGAAACATGTCTGCTTGTAAAGTACAGATCAGTGGGTTTATTCTATATGTGTTTGATTCAGAGGTCTTGTTTTCATGTCTATTTTTTGGGGCAGTCACGGGGAAAACCGTTAAATAAAAGGATGATTGTGAAGACGTT

Function

GO:

id name namespace
GO:0007409 axonogenesis biological_process
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K10078 CHODL; chondrolectin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395485 lncRNA upstream 34747 17907366 ~ 17907681 (+) True G333938
TU395484 lncRNA upstream 37203 17904953 ~ 17905225 (+) True G333937
TU395321 lncRNA upstream 91633 17849795 ~ 17850795 (+) True G333801
TU395319 lncRNA upstream 145907 17781820 ~ 17796521 (+) False pan3
TU395317 lncRNA upstream 184499 17757724 ~ 17757929 (+) True G333799
TU395521 lncRNA downstream 61301 18012927 ~ 18015594 (+) True G333966
TU395506 lncRNA downstream 70113 18021739 ~ 18026962 (+) True G333953
TU395574 lncRNA downstream 92198 18043824 ~ 18045177 (+) True G334005
TU395604 lncRNA downstream 127525 18079151 ~ 18079370 (+) True G334028
TU395608 lncRNA downstream 133693 18085319 ~ 18108804 (+) True G334032
XM_026937954.2 mRNA upstream 160017 17761531 ~ 17782411 (+) True pan3
XM_026938142.2 mRNA upstream 202843 17727853 ~ 17739585 (+) True atp6v1ab
XM_026938144.2 mRNA upstream 236310 17678898 ~ 17706118 (+) True boc
XM_026938146.2 mRNA upstream 236310 17678898 ~ 17706118 (+) False boc
XM_034298054.1 mRNA upstream 288815 17636431 ~ 17653613 (+) False LOC113541191
XM_034298173.1 mRNA downstream 9362 17960988 ~ 17963471 (+) True zgc:112408
XM_026938188.2 mRNA downstream 21578 17973204 ~ 17983420 (+) True lipib
XM_026938136.2 mRNA downstream 136021 18087647 ~ 18097915 (+) True ythdf3
XM_026937924.2 mRNA downstream 263237 18214863 ~ 18217206 (+) True bhlhe22
XM_034298031.1 mRNA downstream 363728 18315354 ~ 18323295 (+) False mtfr1
TU394792 other upstream 640424 17287160 ~ 17302004 (+) False G333388
TU394795 other upstream 640731 17292031 ~ 17301697 (+) False G333388
TU394798 other upstream 642417 17285082 ~ 17300011 (+) True G333388
TU394801 other upstream 642417 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 647374 17287160 ~ 17295054 (+) False G333388
TU395491 other downstream 35136 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 363730 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 363732 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 363734 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 364057 18315683 ~ 18323295 (+) True mtfr1

Expression Profile