RNA id: XM_026938163.2


Basic Information

Item Value
RNA id XM_026938163.2
length 2168
RNA type mRNA
GC content 0.53
exon number 5
gene id klhl15
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13373564 ~ 13379652 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAATACTACCGCCGCTCGTGCTCTGTATAGCCGGGAGAAAATGACGTCATAGTCAATCATGTCGTAGTAACTAAAGCGGTTTAGCTCCAACAGGGGAAACACAAGCAAAGGAAATGTGAGCGTCCTCTCAGCACACTGACAGCGAAGCCGCCGACCGGCCAGGAGGCCTCCAAAAGGTGAATCCCTCAGAAAAGAGGTTTTATTCCTACGGACACAAAGGGCCACTGTCCTCTGATTGGCTCGGACACCCCCCAGTGACATGCCCGTGGCCAATCAGAGGTGCTTAATGGCTGGGGACGTTGAGGTGTACCTGTCACAGGTGCATGATGGGAGCGTGTCCTCGGGCTTCCGAGCCTTGTATGAGGAACGCCTCCTGCTGGATGTGACACTCCTGATAGAAGAGCATCACTTCCAGGCCCACAAAGCTCTGCTGGCCACACAGAGTGACTACTTCCGGGTCATGTTCACGGCAGATATGCGGGAGCGTGACCAGGACAAGATCCATATGAAGGGGCTGACAGCGGCTGGCTTCGGCCACGTCCTTCGCTTCATGTATTATGGCTCGTTGGAACTCAGCATGCCCACAGTGCAGGAGATTCTGCAGGCGGCCATGTATGTGCAGCTCACCGAGGCTGTGGAGTTCTGCTGCTCTTTCCTGTTAGCCAAAATCTGCTTGGAGAACTGTGCTGAGGTCATGAGGTTGCTGGATGATTTCAGTGTGGCTGTAGAGGGAGTGCAGGAGCGGCTGGACGCCTTCCTGCTGGAGAACTTTGTGCCTCTGATGGCCAGGCCAGACTTTTTGTCCTACTTGAGCCTGGAGAAGCTAGTGGTGTGCCTGGGCAGTGAGAGGCTGAGTCGGTTCCCGGAGATTGAGCTGTATGAGGCTGTACAGGCTTGGCTCAGACATGACCGACGCCGCTGGAGACACACGGACGCTGTGGTGCAGAACCTGCGCTTCGGTCTCATGACACCAACACAAGTGTTTGAAAAGGTGAAGACCTCCGAGTTCTATCGTTACTCCCGTCAGCTGAGGCAGGAAGTGGACCAGGCACTCAACTACTTTCACTCGGTGAATGAGCAGCCGCTAGCCGAGACAAAGTCCAACCGGATCCGATCTGTTCGGCCTCAGACAGCTGTGTTCAGAGGGATGATCGGTCACAGCATGGTGAACAGCAAGATCCTCCTGCTGCATCGGCCCAAGGTTTGGTGGGAGTTGGAAGGTCCACAAGTTCCACTTCGGCCTGATTGTTTGGCCATCGTCAACAATTTTGCTTTCCTGTTGGGAGGTGAGGAACTAGGGCCAGATGGAGAGTTTCATGCATCATCCAAGGTTTACCGCTACGATCCAAGGCAGAATTCCTGGCTGAGGATGGCAGACATGTCGGTCCCTAGGTCAGAATTTGCTGTTGGTGTGATCGGAAAGTTCATCTACGCTGTGGCAGGACGGACACGGGACGAGACATTTTACTCGACAGAGCGCTATGACATTGCAGAGGATAAGTGGGAGTTTGTGGATCCGTATCCAGTTAACAAATATGGCCACGAGGGCACGGTGTTGAATGGAAAACTCTATATCACCGGTGGTATCACATCATCCTCCACCTccaaacaggtgtgtgtgtttgatcccGAGCGCGAGGGAGCATCTGAACACCGTACGCGCCGCAATCCCATTCTTACCAACTGCTGGGAGAACAAATCTAAGATGAACTATGCACGCTGTTTCCACAAGATGATCTCCCACAACGGGAAACTTTATGTGTTCGGTGGGGTTTGTGTAATCCTGAGGGCATCTTTCGAATCCCAAGGCTGCCCTTCAACGGAAGTGTACAATCCAGAAACGGACGAATGGACCATCCTTGCTTCCATGCCCATTGGGCGAAGTGGGCATGGGGTGGCAGTGCTAGACAAACAGATCATGGTGCTGGGCGGATTGTGCTACAATGGCCATTACAGTGACTCTATACTCACCTTTGATCCTGAGGAGAACAAGTGGAAGGAGGATGAGTATCCCAGAATGCCTTGCAAACTGGATGGCTTGCAGGTGTGCAGCCTGCACTTCCCTGAGTATGTCCTGGAACACATGAAGCGCTGCAGCTGAGGGTCTCTGAGAAGGATGAGggggtgaaaaaaaacaaaaaacaaaacaaacgtTTACAAATGTGAAA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392593 lncRNA upstream 11176 13361369 ~ 13362702 (+) True G331496
TU392595 lncRNA upstream 12860 13360280 ~ 13361018 (+) True G331498
TU392561 lncRNA upstream 83479 13287447 ~ 13290399 (+) True G331468
TU392580 lncRNA upstream 99467 13274127 ~ 13274411 (+) True G331487
TU392579 lncRNA upstream 99837 13273743 ~ 13274041 (+) True G331486
TU392599 lncRNA downstream 992 13380644 ~ 13382636 (+) True G331502
XR_004576995.1 lncRNA downstream 578372 13958024 ~ 13962184 (+) True LOC117595809
TU393268 lncRNA downstream 1308511 14688163 ~ 14703270 (+) True G332111
TU393426 lncRNA downstream 1565339 14944991 ~ 14945212 (+) True G332238
TU393440 lncRNA downstream 1576208 14955860 ~ 14956067 (+) True G332248
XM_026938165.2 mRNA upstream 23662 13343746 ~ 13350216 (+) True c8g
XM_026938148.2 mRNA upstream 32217 13336338 ~ 13341661 (+) True msrb2
XM_026938109.2 mRNA upstream 39353 13322337 ~ 13334525 (+) True armc3
XM_026937922.2 mRNA upstream 95853 13274660 ~ 13278025 (+) True skida1
XM_026938128.2 mRNA upstream 331362 13021167 ~ 13042516 (+) True cul1b
XM_026937943.2 mRNA downstream 6422 13386074 ~ 13396461 (+) True cmbl
XM_026937944.2 mRNA downstream 6451 13386103 ~ 13396461 (+) False cmbl
XM_026937939.2 mRNA downstream 26512 13406164 ~ 13447748 (+) True mtrr
XM_034298306.1 mRNA downstream 595588 13975240 ~ 13980189 (+) True cbln2b
XM_034298235.1 mRNA downstream 854392 14234044 ~ 14295771 (+) True rttn
TU392569 other upstream 115462 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 661200 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 1217091 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 1625319 11738158 ~ 11748559 (+) True ankha
TU391206 other upstream 2398963 10973264 ~ 10974915 (+) True G330257
trnat-agu_17 other downstream 5549 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 1871983 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 2186523 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 3727820 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 3727820 17107472 ~ 17110027 (+) False hhatlb

Expression Profile