RNA id: XM_026938165.2



Basic Information


Item Value
RNA id XM_026938165.2
length 753
RNA type mRNA
GC content 0.44
exon number 7
gene id c8g
representative True

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13343746 ~ 13350216 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


gTGTGCACGTAtggtgcgcgtgtgtgtttgtatttgtctCTGGTGCTGTTGTTGGGTTTTAGTCTCTGGGAACCTGTGGATGGAAGACGAACTCGATACAagccaaaaccaaaaccaaaaccagaTAAAAAGCCCGTTGAGGAGATCGCTCCAGCTCAGAACGTTGATATCAATAAGATGAATGGACAGTGGTACCTGCTAAGTGTGGCGTCGAGATGTAAGTACCTTTTAGAGCATGGCTATAAGATGGAGGGCACCATCATAACTCTGACTGCAACCGACTCACCCAAAGCACCAATCCAAGTGAGCACCTTCACCAAACTAAATTATCAGTGTTGGGAGATCAAACAGCAGTACGAGACCACGAAGAGTCTGGGCCGATTCCTACTGAGAGCAAAGATGCCAGTGAAGAACACTGAGGTCCTCATTGTAGAGACAGACTACAACTCTTATGCCATTTTACTCTATAAGAAAATGAACAACCTCACCTTGAAACTCTACGGCCGCTCCCCAGAGATTGCTGAAGAAATTGTGGATAAATTTGAGGACATTGCAAAGAAACAAAATCTGGGCTTGGATGTTATTTTCCAGTTTCCTAATTATGGGTTTTGTCAGTCTGCAGACAGTGAGCACACACTTGTAATGACCTGAGCAGATCTGTCTTTGTGAGAGACGTCTGTGGATATGACGGCTTCATCATAAACATGAGTACAAGAAACAATCTCAGATGtggcagaaaaaataaagatgatc

Function


GO: NA

KEGG:

id description
K03999 C8G; complement component 8 subunit gamma

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU392561 lncRNA upstream 53347 13287447 ~ 13290399 (+) True G331468
TU392580 lncRNA upstream 69335 13274127 ~ 13274411 (+) True G331487
TU392579 lncRNA upstream 69705 13273743 ~ 13274041 (+) True G331486
TU392575 lncRNA upstream 74104 13269427 ~ 13269642 (+) True G331482
TU392573 lncRNA upstream 79160 13264349 ~ 13264586 (+) True G331480
TU392595 lncRNA downstream 10064 13360280 ~ 13361018 (+) True G331498
TU392593 lncRNA downstream 11153 13361369 ~ 13362702 (+) True G331496
TU392599 lncRNA downstream 30428 13380644 ~ 13382636 (+) True G331502
XR_004576995.1 lncRNA downstream 607808 13958024 ~ 13962184 (+) True LOC117595809
TU393268 lncRNA downstream 1337947 14688163 ~ 14703270 (+) True G332111
XM_026938148.2 mRNA upstream 2085 13336338 ~ 13341661 (+) True msrb2
XM_026938109.2 mRNA upstream 9221 13322337 ~ 13334525 (+) True armc3
XM_026937922.2 mRNA upstream 65721 13274660 ~ 13278025 (+) True skida1
XM_026938128.2 mRNA upstream 301230 13021167 ~ 13042516 (+) True cul1b
XM_026938097.2 mRNA upstream 328637 12766560 ~ 13015109 (+) True LOC113541231
XM_026938162.2 mRNA downstream 23348 13373564 ~ 13379652 (+) True klhl15
XM_034298205.1 mRNA downstream 23598 13373814 ~ 13379652 (+) False klhl15
XM_026938163.2 mRNA downstream 23662 13373878 ~ 13379652 (+) False klhl15
XM_026937943.2 mRNA downstream 35858 13386074 ~ 13396461 (+) True cmbl
XM_026937944.2 mRNA downstream 35887 13386103 ~ 13396461 (+) False cmbl
TU392569 other upstream 85330 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 631068 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 1186959 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 1595187 11738158 ~ 11748559 (+) True ankha
TU391206 other upstream 2368831 10973264 ~ 10974915 (+) True G330257
trnat-agu_17 other downstream 34985 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 1901419 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 2215959 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 3757256 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 3757256 17107472 ~ 17110027 (+) False hhatlb

Expression Profile